RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 Q8N976 141 aa6.25□□□□□ -1.41
LDLR-210ENST00000559340 UBE2WQ96B02 151 aa6.25□□□□□ -1.41
LDLR-210ENST00000559340 HBDP02042 147 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 RPL39P62891 51 aaKnown RBP6.24□□□□□ -1.41
LDLR-210ENST00000559340 MRPS36P82909 103 aaKnown RBP6.24□□□□□ -1.41
LDLR-210ENST00000559340 Q6ZN92 141 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 LINC00269Q8N2A0 174 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 ZNF664Q8N3J9 261 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 TOMM6Q96B49 74 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 TMEM141Q96I45 108 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 SCGB3A1Q96QR1 104 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 CDC42SE2Q9NRR3 84 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 UBE2D4Q9Y2X8 147 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 DNAH6Q9C0G6 4158 aa6.24□□□□□ -1.41
LDLR-210ENST00000559340 LYSTQ99698 3801 aa6.23□□□□□ -1.41
LDLR-210ENST00000559340 IGLV4-60A0A075B6I1 120 aa6.23□□□□□ -1.41
LDLR-210ENST00000559340 REG3AQ06141 175 aa6.23□□□□□ -1.41
LDLR-210ENST00000559340 SS18Q15532 418 aa6.23□□□□□ -1.41
LDLR-210ENST00000559340 ERASQ7Z444 233 aa6.23□□□□□ -1.41
LDLR-210ENST00000559340 TIMM17AQ99595 171 aa6.23□□□□□ -1.41
LDLR-210ENST00000559340 C1orf43Q9BWL3 253 aa6.23□□□□□ -1.41
LDLR-210ENST00000559340 PRR34Q9NV39 138 aa6.23□□□□□ -1.41
LDLR-210ENST00000559340 PSCAO43653 123 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST1H2BKO60814 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 ATP5LO75964 103 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST1H2BJP06899 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST1H2BOP23527 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST1H2BBP33778 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST1H2BDP58876 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST1H2BCP62807 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST2H2BEQ16778 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.22□□□□□ -1.41
LDLR-210ENST00000559340 Q8N3U1 123 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST1H2BHQ93079 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST1H2BNQ99877 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 HIST1H2BMQ99879 126 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 C2orf88Q9BSF0 95 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 VCX2Q9H322 139 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 Q9HAA7 133 aa6.22□□□□□ -1.41
LDLR-210ENST00000559340 IGKV2D-24A0A075B6R9 120 aa6.21□□□□□ -1.42
LDLR-210ENST00000559340 IGIPA6NJ69 53 aa6.21□□□□□ -1.42
LDLR-210ENST00000559340 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.21□□□□□ -1.42
LDLR-210ENST00000559340 SERF1AO75920 110 aa6.21□□□□□ -1.42
LDLR-210ENST00000559340 ENHOQ6UWT2 76 aa6.21□□□□□ -1.42
LDLR-210ENST00000559340 TEX43Q6ZNM6 134 aa6.21□□□□□ -1.42
LDLR-210ENST00000559340 URB1-AS1Q96HZ7 61 aa6.21□□□□□ -1.42
LDLR-210ENST00000559340 IGKV3OR2-268A0A0C4DH90 116 aa6.2□□□□□ -1.42
LDLR-210ENST00000559340 EREGO14944 169 aa6.2□□□□□ -1.42
LDLR-210ENST00000559340 SEC11AP67812 179 aa6.2□□□□□ -1.42
LDLR-210ENST00000559340 LINC00336Q6ZUF6 198 aa6.2□□□□□ -1.42
LDLR-210ENST00000559340 KRTAP1-5Q9BYS1 174 aa6.2□□□□□ -1.42
LDLR-210ENST00000559340 IGLV4-3A0A075B6K6 122 aa6.19□□□□□ -1.42
LDLR-210ENST00000559340 LINC00959A0A1B0GUT2 108 aa6.19□□□□□ -1.42
LDLR-210ENST00000559340 IFITM10A6NMD0 228 aa6.19□□□□□ -1.42
LDLR-210ENST00000559340 S100A6P06703 90 aa6.19□□□□□ -1.42
LDLR-210ENST00000559340 NDUFA6P56556 154 aa6.19□□□□□ -1.42
LDLR-210ENST00000559340 COA6Q5JTJ3 125 aaKnown RBP6.19□□□□□ -1.42
LDLR-210ENST00000559340 CLPSL2Q6UWE3 100 aa6.19□□□□□ -1.42
LDLR-210ENST00000559340 Q6ZUT4 128 aa6.19□□□□□ -1.42
LDLR-210ENST00000559340 HSPB8Q9UJY1 196 aa6.19□□□□□ -1.42
LDLR-210ENST00000559340 TRAV13-1A0A0B4J241 112 aa6.18□□□□□ -1.42
LDLR-210ENST00000559340 LEPROTL1O95214 131 aa6.18□□□□□ -1.42
LDLR-210ENST00000559340 PMVKQ15126 192 aa6.18□□□□□ -1.42
LDLR-210ENST00000559340 PMCHL1Q16048 86 aa6.18□□□□□ -1.42
LDLR-210ENST00000559340 PDZD11Q5EBL8 140 aa6.18□□□□□ -1.42
LDLR-210ENST00000559340 CFAP161Q6P656 301 aa6.18□□□□□ -1.42
LDLR-210ENST00000559340 CHCHD10Q8WYQ3 142 aaPredicted RBP6.18□□□□□ -1.42
LDLR-210ENST00000559340 PACRGQ96M98 296 aaPredicted RBP6.18□□□□□ -1.42
LDLR-210ENST00000559340 AMELXQ99217 191 aa6.18□□□□□ -1.42
LDLR-210ENST00000559340 KRTAP17-1Q9BYP8 105 aa6.18□□□□□ -1.42
LDLR-210ENST00000559340 HYDINQ4G0P3 5121 aa6.17□□□□□ -1.42
LDLR-210ENST00000559340 PRSS1P07477 247 aa6.17□□□□□ -1.42
LDLR-210ENST00000559340 C14orf177Q52M58 125 aa6.17□□□□□ -1.42
LDLR-210ENST00000559340 RNASE13Q5GAN3 156 aaKnown RBP6.17□□□□□ -1.42
LDLR-210ENST00000559340 CD164L2Q6UWJ8 174 aa6.17□□□□□ -1.42
LDLR-210ENST00000559340 FAM19A2Q8N3H0 131 aa6.17□□□□□ -1.42
LDLR-210ENST00000559340 IFI27L1Q96BM0 104 aa6.17□□□□□ -1.42
LDLR-210ENST00000559340 OPRPNQ99935 248 aaPredicted RBP6.17□□□□□ -1.42
LDLR-210ENST00000559340 KMT2AQ03164 3969 aa6.16□□□□□ -1.42
LDLR-210ENST00000559340 IGLV10-54A0A075B6I4 117 aa6.16□□□□□ -1.42
LDLR-210ENST00000559340 A0A096LNJ9 63 aa6.16□□□□□ -1.42
LDLR-210ENST00000559340 GAGE12HA6NDE8 117 aa6.16□□□□□ -1.42
LDLR-210ENST00000559340 Q6ZRN7 208 aaPredicted RBP6.16□□□□□ -1.42
LDLR-210ENST00000559340 GEMIN7Q9H840 131 aaKnown RBP6.16□□□□□ -1.42
LDLR-210ENST00000559340 PRSS29PA6NIE9 313 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 RTL8CO15255 209 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 NUPR1O60356 82 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 APOMO95445 188 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 MALP21145 153 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 S100A2P29034 98 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 XCL1P47992 114 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 UBE2D1P51668 147 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 LINC00310P59036 64 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 HERVK_113P63121 156 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 BAALCQ8WXS3 180 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 FAM104AQ969W3 186 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 MAP1LC3CQ9BXW4 147 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 CST9LQ9H4G1 147 aa6.15□□□□□ -1.42
LDLR-210ENST00000559340 TRAV12-1A0A0B4J245 112 aa6.14□□□□□ -1.43
LDLR-210ENST00000559340 COX7A2LO14548 114 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms