RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 IGIPA6NJ69 53 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 KNCNA6PVL3 124 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 I3L2K1 104 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 I3L3M4 83 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 COX7A2LO14548 114 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 NDUFC1O43677 76 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 IGHG2P01859 326 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 FAM236CP0DP71 79 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 CCL3P10147 92 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 ZNF80P51504 273 aaPredicted RBP1.71□□□□□ -2.14
VPS13C-208ENST00000559119 UBE2E1P51965 193 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 RHOHQ15669 191 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 VMA21Q3ZAQ7 101 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 S100A7L2Q5SY68 101 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 LYPD5Q6UWN5 251 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 OBSCN-AS1Q96MR7 158 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 RNF5Q99942 180 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 CYSTM1Q9H1C7 97 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 LENEPQ9Y5L5 61 aa1.71□□□□□ -2.14
VPS13C-208ENST00000559119 TANC2Q9HCD6 1990 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 MUC6Q6W4X9 2439 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 IGHV3-66A0A0C4DH42 116 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 IGHV7-4-1A0A0J9YVY3 117 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 TRBV7-6A0A0J9YX20 115 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 TRBV6-5A0A0K0K1A5 114 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 E7EUB6 86 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 C5orf67F2Z3F1 127 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 K7EMT4 169 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 M0R3E3 92 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 LYZL6O75951 148 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 LHBP01229 141 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 IGKV1-16P04430 117 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 RPL27AP46776 148 aaKnown RBP1.7□□□□□ -2.14
VPS13C-208ENST00000559119 XCL1P47992 114 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 POLR2KP53803 58 aaKnown RBP1.7□□□□□ -2.14
VPS13C-208ENST00000559119 TSPEAR-AS2P59090 65 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 CD164Q04900 197 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 REG3AQ06141 175 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 KLKP1Q107X0 134 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 RBMY1FQ15415 496 aaKnown RBP1.7□□□□□ -2.14
VPS13C-208ENST00000559119 MIAQ16674 131 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 KRTAP13-4Q3LI77 160 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 LYPD2Q6UXB3 125 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 Q6ZRU5 148 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 FP248Q71RG6 208 aaPredicted RBP1.7□□□□□ -2.14
VPS13C-208ENST00000559119 FAM19A1Q7Z5A9 133 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 DAZ4Q86SG3 579 aaKnown RBP1.7□□□□□ -2.14
VPS13C-208ENST00000559119 GPHB5Q86YW7 130 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 PRR15Q8IV56 129 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 DYNAPQ8N1N2 210 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 C10orf105Q8TEF2 133 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 TMEM243Q9BU79 118 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 DAZ1Q9NQZ3 744 aaKnown RBP1.7□□□□□ -2.14
VPS13C-208ENST00000559119 PKIGQ9Y2B9 76 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 UBE2D4Q9Y2X8 147 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 C22orf24Q9Y442 160 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 UTRNP46939 3433 aa1.7□□□□□ -2.14
VPS13C-208ENST00000559119 LTBP2Q14767 1821 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 SVILO95425 2214 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 TRAV7A0A075B6U4 112 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 TRAV8-3A0A0A6YYJ7 113 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 TRAV26-2A0A0B4J265 109 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 IGHV3OR16-9A0A0B4J2B5 98 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 IGHV1-18A0A0C4DH31 117 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 TRBV27A0A0K0K1C4 114 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 PLAC8L1A1L4L8 177 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 FAM223BA6NKX1 122 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 IBA57-AS1B1ANH7 110 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 H7BZZ5 65 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 TRGV3P03979 118 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 BAALC-AS2P0C853 105 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 NBL1P41271 181 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 PMAIP1Q13794 54 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 KLK9Q2XQG4 91 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 SPANXN1Q5VSR9 72 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 ZNF826PQ6ZT77 177 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 CLEC2BQ92478 149 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 CAMK2N2Q96S95 79 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 CCL13Q99616 98 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 KLK9Q9UKQ9 250 aa1.69□□□□□ -2.14
VPS13C-208ENST00000559119 GOLGA4Q13439 2230 aaKnown RBP1.68□□□□□ -2.14
VPS13C-208ENST00000559119 TRAV13-2A0A0B4J235 113 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 IGHV1-58A0A0C4DH39 117 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 H0YGX0 51 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 H7C2G1 150 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 K7EIM0 57 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 ENSAO43768 121 aaKnown RBP1.68□□□□□ -2.14
VPS13C-208ENST00000559119 ERC2-IT1O76042 136 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 CCKP06307 115 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 RNASE4P34096 147 aaKnown RBP1.68□□□□□ -2.14
VPS13C-208ENST00000559119 PRR3P79522 188 aaKnown RBP1.68□□□□□ -2.14
VPS13C-208ENST00000559119 DEFB103AP81534 67 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 HCP5Q6MZN7 132 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 GAFA1Q96PS6 74 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 USF3Q68DE3 2245 aa1.68□□□□□ -2.14
VPS13C-208ENST00000559119 FBN3Q75N90 2809 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 HEATR1Q9H583 2144 aaKnown RBP1.67□□□□□ -2.14
VPS13C-208ENST00000559119 SPAG17Q6Q759 2223 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 MYO9BQ13459 2157 aa1.67□□□□□ -2.14
VPS13C-208ENST00000559119 IGKV2-40A0A087WW87 121 aaPredicted RBP1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms