RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 NTM-AS1Q6ZSK4 140 aa8.42□□□□□ -1.06
TMEM260-215ENST00000557626 ALKBH7Q9BT30 221 aaPredicted RBP8.42□□□□□ -1.06
TMEM260-215ENST00000557626 H7C1H1 209 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 IGHV3-30P01768 117 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 IGHV3-33P01772 117 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 MT-ND6P03923 174 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 IGHV3-30-3P0DP02 117 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 IGHV3-30-5P0DP03 117 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 FABP9Q0Z7S8 132 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 OR10J3Q5JRS4 329 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 DNAJC30Q96LL9 226 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 PRELID3AQ96N28 172 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 TRAPPC1Q9Y5R8 145 aa8.41□□□□□ -1.06
TMEM260-215ENST00000557626 PRSS47A8MTI9 375 aa8.4□□□□□ -1.06
TMEM260-215ENST00000557626 PPBPP02775 128 aa8.4□□□□□ -1.06
TMEM260-215ENST00000557626 TRGC2P03986 189 aa8.4□□□□□ -1.06
TMEM260-215ENST00000557626 RPL36AP83881 106 aaKnown RBP8.4□□□□□ -1.06
TMEM260-215ENST00000557626 ORMDL3Q8N138 153 aa8.4□□□□□ -1.06
TMEM260-215ENST00000557626 ATP6V0E2Q8NHE4 81 aa8.4□□□□□ -1.06
TMEM260-215ENST00000557626 RPL36ALQ969Q0 106 aaKnown RBP8.4□□□□□ -1.06
TMEM260-215ENST00000557626 SDHAF1A6NFY7 115 aa8.39□□□□□ -1.07
TMEM260-215ENST00000557626 TRBV27A0A0K0K1C4 114 aa8.38□□□□□ -1.07
TMEM260-215ENST00000557626 TSHBP01222 138 aa8.38□□□□□ -1.07
TMEM260-215ENST00000557626 TIRAPP58753 221 aa8.38□□□□□ -1.07
TMEM260-215ENST00000557626 SUMO2P61956 95 aaKnown RBP8.38□□□□□ -1.07
TMEM260-215ENST00000557626 RPL32P62910 135 aaKnown RBP8.38□□□□□ -1.07
TMEM260-215ENST00000557626 REG3GQ6UW15 175 aa8.38□□□□□ -1.07
TMEM260-215ENST00000557626 C20orf78Q9BR46 151 aa8.38□□□□□ -1.07
TMEM260-215ENST00000557626 ST20Q9HBF5 79 aa8.38□□□□□ -1.07
TMEM260-215ENST00000557626 IQCJQ1A5X6 159 aa8.37□□□□□ -1.07
TMEM260-215ENST00000557626 URB1-AS1Q96HZ7 61 aa8.37□□□□□ -1.07
TMEM260-215ENST00000557626 GTSF1LQ9H1H1 148 aa8.37□□□□□ -1.07
TMEM260-215ENST00000557626 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.37□□□□□ -1.07
TMEM260-215ENST00000557626 TRAV8-3A0A0A6YYJ7 113 aa8.36□□□□□ -1.07
TMEM260-215ENST00000557626 TRAV8-6A0A0B4J262 113 aa8.36□□□□□ -1.07
TMEM260-215ENST00000557626 DAZ4Q86SG3 579 aaKnown RBP8.36□□□□□ -1.07
TMEM260-215ENST00000557626 C18orf32Q8TCD1 76 aa8.36□□□□□ -1.07
TMEM260-215ENST00000557626 SMIM2Q9BVW6 85 aa8.36□□□□□ -1.07
TMEM260-215ENST00000557626 DAZ3Q9NR90 486 aaKnown RBP8.36□□□□□ -1.07
TMEM260-215ENST00000557626 LAMTOR2Q9Y2Q5 125 aa8.36□□□□□ -1.07
TMEM260-215ENST00000557626 COX11Q9Y6N1 276 aa8.36□□□□□ -1.07
TMEM260-215ENST00000557626 PPP1R17O96001 155 aa8.35□□□□□ -1.07
TMEM260-215ENST00000557626 SH2D6Q7Z4S9 175 aa8.35□□□□□ -1.07
TMEM260-215ENST00000557626 CHCHD7Q9BUK0 85 aa8.35□□□□□ -1.07
TMEM260-215ENST00000557626 TRBV6-8A0A0A6YYG3 113 aa8.34□□□□□ -1.07
TMEM260-215ENST00000557626 LOC389332A0A1B0GUA5 103 aa8.34□□□□□ -1.07
TMEM260-215ENST00000557626 VCYO14598 125 aa8.34□□□□□ -1.07
TMEM260-215ENST00000557626 ESDP10768 282 aa8.34□□□□□ -1.07
TMEM260-215ENST00000557626 IFI27P40305 119 aaPredicted RBP8.34□□□□□ -1.07
TMEM260-215ENST00000557626 LINC00310P59036 64 aa8.34□□□□□ -1.07
TMEM260-215ENST00000557626 Q8N3U1 123 aa8.34□□□□□ -1.07
TMEM260-215ENST00000557626 LINC01546A6NGU7 62 aa8.33□□□□□ -1.08
TMEM260-215ENST00000557626 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.33□□□□□ -1.08
TMEM260-215ENST00000557626 I3L3M4 83 aa8.33□□□□□ -1.08
TMEM260-215ENST00000557626 TCAPO15273 167 aa8.33□□□□□ -1.08
TMEM260-215ENST00000557626 Q8N8P6 123 aa8.33□□□□□ -1.08
TMEM260-215ENST00000557626 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.33□□□□□ -1.08
TMEM260-215ENST00000557626 PMCHP20382 165 aa8.32□□□□□ -1.08
TMEM260-215ENST00000557626 MAP1LC3AQ9H492 121 aa8.32□□□□□ -1.08
TMEM260-215ENST00000557626 HIST1H2BKO60814 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST1H2BJP06899 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST1H2BOP23527 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST1H2BBP33778 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST1H2BDP58876 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST1H2BCP62807 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 COTL1Q14019 142 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST2H2BEQ16778 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST1H2BHQ93079 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 FAM104AQ969W3 186 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST1H2BNQ99877 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 HIST1H2BMQ99879 126 aa8.31□□□□□ -1.08
TMEM260-215ENST00000557626 NUPR1O60356 82 aa8.3□□□□□ -1.08
TMEM260-215ENST00000557626 Q0VG73 95 aa8.3□□□□□ -1.08
TMEM260-215ENST00000557626 PRR4Q16378 134 aa8.3□□□□□ -1.08
TMEM260-215ENST00000557626 NIT1Q86X76 327 aa8.3□□□□□ -1.08
TMEM260-215ENST00000557626 RMI2Q96E14 147 aa8.3□□□□□ -1.08
TMEM260-215ENST00000557626 NXT2Q9NPJ8 142 aaKnown RBP8.3□□□□□ -1.08
TMEM260-215ENST00000557626 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.29□□□□□ -1.08
TMEM260-215ENST00000557626 A0A096LNJ9 63 aa8.29□□□□□ -1.08
TMEM260-215ENST00000557626 IGHV1-24A0A0C4DH33 117 aa8.29□□□□□ -1.08
TMEM260-215ENST00000557626 IGKV2-29A2NJV5 120 aaPredicted RBP8.29□□□□□ -1.08
TMEM260-215ENST00000557626 AMTP48728 403 aa8.29□□□□□ -1.08
TMEM260-215ENST00000557626 C14orf177Q52M58 125 aa8.29□□□□□ -1.08
TMEM260-215ENST00000557626 C7orf33Q8WU49 177 aa8.29□□□□□ -1.08
TMEM260-215ENST00000557626 RPL39P62891 51 aaKnown RBP8.28□□□□□ -1.08
TMEM260-215ENST00000557626 GAGE6Q13070 117 aa8.28□□□□□ -1.08
TMEM260-215ENST00000557626 TMEM97Q5BJF2 176 aa8.28□□□□□ -1.08
TMEM260-215ENST00000557626 C4orf48Q5BLP8 95 aa8.28□□□□□ -1.08
TMEM260-215ENST00000557626 C20orf203Q8NBC4 194 aa8.28□□□□□ -1.08
TMEM260-215ENST00000557626 PRSS3P2Q8NHM4 247 aa8.28□□□□□ -1.08
TMEM260-215ENST00000557626 KIR2DL4Q99706 377 aa8.28□□□□□ -1.08
TMEM260-215ENST00000557626 TMEM243Q9BU79 118 aa8.28□□□□□ -1.08
TMEM260-215ENST00000557626 TRBV25-1A0A075B6N4 114 aa8.27□□□□□ -1.09
TMEM260-215ENST00000557626 IGKV2D-24A0A075B6R9 120 aa8.27□□□□□ -1.09
TMEM260-215ENST00000557626 LINC00614P0C842 121 aa8.27□□□□□ -1.09
TMEM260-215ENST00000557626 MPV17L2Q567V2 206 aa8.27□□□□□ -1.09
TMEM260-215ENST00000557626 SPINK6Q6UWN8 80 aa8.27□□□□□ -1.09
TMEM260-215ENST00000557626 IGLV4-60A0A075B6I1 120 aa8.26□□□□□ -1.09
TMEM260-215ENST00000557626 SERF1AO75920 110 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 239.1 ms