RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.01□□□□□ -1.29
LINC00239-201ENST00000556973 KRTAP10-1P60331 282 aa7.01□□□□□ -1.29
LINC00239-201ENST00000556973 ZNF664Q8N3J9 261 aa7.01□□□□□ -1.29
LINC00239-201ENST00000556973 RPS10P5Q9NQ39 176 aa7.01□□□□□ -1.29
LINC00239-201ENST00000556973 IGKV3OR2-268A0A0C4DH90 116 aa7□□□□□ -1.29
LINC00239-201ENST00000556973 USP17L23D6RBM5 183 aa7□□□□□ -1.29
LINC00239-201ENST00000556973 RAB5AP20339 215 aa7□□□□□ -1.29
LINC00239-201ENST00000556973 NDUFA5Q16718 116 aa7□□□□□ -1.29
LINC00239-201ENST00000556973 TIMM21Q9BVV7 248 aa7□□□□□ -1.29
LINC00239-201ENST00000556973 MAP1LC3AQ9H492 121 aa7□□□□□ -1.29
LINC00239-201ENST00000556973 UBE2D4Q9Y2X8 147 aa7□□□□□ -1.29
LINC00239-201ENST00000556973 LINC00959A0A1B0GUT2 108 aa6.99□□□□□ -1.29
LINC00239-201ENST00000556973 APOC3P02656 99 aa6.99□□□□□ -1.29
LINC00239-201ENST00000556973 COX19Q49B96 90 aa6.99□□□□□ -1.29
LINC00239-201ENST00000556973 CHCHD10Q8WYQ3 142 aaPredicted RBP6.99□□□□□ -1.29
LINC00239-201ENST00000556973 GNB1LQ9BYB4 327 aa6.99□□□□□ -1.29
LINC00239-201ENST00000556973 KRTAP17-1Q9BYP8 105 aa6.99□□□□□ -1.29
LINC00239-201ENST00000556973 LOC389332A0A1B0GUA5 103 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 GAGE12HA6NDE8 117 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 K7EMI3 77 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 CCL25O15444 150 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 SNAPINO95295 136 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 SS18Q15532 418 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 CFAP161Q6P656 301 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 SVBPQ8N300 66 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 Q8N8P6 123 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 KIAA1109Q2LD37 5005 aa6.98□□□□□ -1.29
LINC00239-201ENST00000556973 PRSS1P07477 247 aa6.97□□□□□ -1.29
LINC00239-201ENST00000556973 XGP55808 180 aa6.97□□□□□ -1.29
LINC00239-201ENST00000556973 RPL39P62891 51 aaKnown RBP6.97□□□□□ -1.29
LINC00239-201ENST00000556973 DNAH5Q8TE73 4624 aa6.97□□□□□ -1.29
LINC00239-201ENST00000556973 C1orf196B1AJZ1 125 aa6.96□□□□□ -1.3
LINC00239-201ENST00000556973 FOXI1Q12951 378 aa6.96□□□□□ -1.3
LINC00239-201ENST00000556973 KIAA1644Q3SXP7 199 aa6.96□□□□□ -1.3
LINC00239-201ENST00000556973 NXT2Q9NPJ8 142 aaKnown RBP6.96□□□□□ -1.3
LINC00239-201ENST00000556973 SPANXA1Q9NS26 97 aa6.96□□□□□ -1.3
LINC00239-201ENST00000556973 LRP1BQ9NZR2 4599 aa6.95□□□□□ -1.3
LINC00239-201ENST00000556973 hDV102S1A0JD36 115 aa6.95□□□□□ -1.3
LINC00239-201ENST00000556973 MT-ND6P03923 174 aa6.95□□□□□ -1.3
LINC00239-201ENST00000556973 G0S2P27469 103 aa6.95□□□□□ -1.3
LINC00239-201ENST00000556973 XCL1P47992 114 aa6.95□□□□□ -1.3
LINC00239-201ENST00000556973 MRPS36P82909 103 aaKnown RBP6.95□□□□□ -1.3
LINC00239-201ENST00000556973 ORMDL2Q53FV1 153 aa6.95□□□□□ -1.3
LINC00239-201ENST00000556973 CD164L2Q6UWJ8 174 aa6.95□□□□□ -1.3
LINC00239-201ENST00000556973 AP5S1Q9NUS5 200 aa6.95□□□□□ -1.3
LINC00239-201ENST00000556973 PYGO1Q9Y3Y4 419 aa6.95□□□□□ -1.3
LINC00239-201ENST00000556973 IFI27P40305 119 aaPredicted RBP6.94□□□□□ -1.3
LINC00239-201ENST00000556973 LINC01620Q4KN68 170 aa6.94□□□□□ -1.3
LINC00239-201ENST00000556973 Q6ZSA8 131 aa6.94□□□□□ -1.3
LINC00239-201ENST00000556973 C9orf163Q8N9P6 203 aa6.94□□□□□ -1.3
LINC00239-201ENST00000556973 ALKBH7Q9BT30 221 aaPredicted RBP6.94□□□□□ -1.3
LINC00239-201ENST00000556973 MRPL18Q9H0U6 180 aaKnown RBP6.94□□□□□ -1.3
LINC00239-201ENST00000556973 FAM30AQ9NZY2 134 aa6.94□□□□□ -1.3
LINC00239-201ENST00000556973 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.93□□□□□ -1.3
LINC00239-201ENST00000556973 TRAV13-1A0A0B4J241 112 aa6.93□□□□□ -1.3
LINC00239-201ENST00000556973 CNBPP62633 177 aaKnown RBP6.93□□□□□ -1.3
LINC00239-201ENST00000556973 FABP9Q0Z7S8 132 aa6.93□□□□□ -1.3
LINC00239-201ENST00000556973 RNASE13Q5GAN3 156 aaKnown RBP6.93□□□□□ -1.3
LINC00239-201ENST00000556973 Q6ZUT4 128 aa6.93□□□□□ -1.3
LINC00239-201ENST00000556973 Q8N1X5 172 aa6.93□□□□□ -1.3
LINC00239-201ENST00000556973 C15orf56Q8N910 161 aa6.93□□□□□ -1.3
LINC00239-201ENST00000556973 PRSS3P2Q8NHM4 247 aa6.93□□□□□ -1.3
LINC00239-201ENST00000556973 FAM104AQ969W3 186 aa6.93□□□□□ -1.3
LINC00239-201ENST00000556973 CYSLTR1Q9Y271 337 aa6.93□□□□□ -1.3
LINC00239-201ENST00000556973 TGIF2-C20orf24A0A0A6YYL0 155 aa6.92□□□□□ -1.3
LINC00239-201ENST00000556973 IGHV1-58A0A0C4DH39 117 aa6.92□□□□□ -1.3
LINC00239-201ENST00000556973 C2orf66Q6UXQ4 117 aa6.92□□□□□ -1.3
LINC00239-201ENST00000556973 OPRPNQ99935 248 aaPredicted RBP6.92□□□□□ -1.3
LINC00239-201ENST00000556973 TRAPPC1Q9Y5R8 145 aa6.92□□□□□ -1.3
LINC00239-201ENST00000556973 GVQW2A0A096LPI5 108 aaPredicted RBP6.91□□□□□ -1.3
LINC00239-201ENST00000556973 SLPIP03973 132 aa6.91□□□□□ -1.3
LINC00239-201ENST00000556973 NPSP0C0P6 89 aa6.91□□□□□ -1.3
LINC00239-201ENST00000556973 SLC7A5P1Q8MH63 180 aa6.91□□□□□ -1.3
LINC00239-201ENST00000556973 TMEM141Q96I45 108 aa6.91□□□□□ -1.3
LINC00239-201ENST00000556973 IGLV4-3A0A075B6K6 122 aa6.9□□□□□ -1.3
LINC00239-201ENST00000556973 COX7A2LO14548 114 aa6.9□□□□□ -1.3
LINC00239-201ENST00000556973 MALP21145 153 aa6.9□□□□□ -1.3
LINC00239-201ENST00000556973 HIGD2BQ4VC39 106 aa6.9□□□□□ -1.3
LINC00239-201ENST00000556973 SDIM1Q6ZPB5 146 aa6.9□□□□□ -1.3
LINC00239-201ENST00000556973 HERC2O95714 4834 aa6.9□□□□□ -1.3
LINC00239-201ENST00000556973 HSPG2P98160 4391 aa6.9□□□□□ -1.31
LINC00239-201ENST00000556973 APOBP04114 4563 aaKnown RBP6.89□□□□□ -1.31
LINC00239-201ENST00000556973 IGHV3-64A0A075B6Q5 118 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 LINC01546A6NGU7 62 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 LINC01549A6NIU2 74 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 IGIPA6NJ69 53 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 IFITM10A6NMD0 228 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 ZNF561-AS1K7EIQ3 104 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 HAMPP81172 84 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 PAPPA-AS1Q5QFB9 102 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 Q6ZN92 141 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 TEX43Q6ZNM6 134 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 TOMM6Q96B49 74 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 CHAC1Q9BUX1 264 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 KRTAP4-5Q9BYR2 181 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 VCX2Q9H322 139 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 RYR1P21817 5038 aa6.89□□□□□ -1.31
LINC00239-201ENST00000556973 IGHV3OR16-9A0A0B4J2B5 98 aa6.88□□□□□ -1.31
LINC00239-201ENST00000556973 EPM2AB3EWF7 344 aa6.88□□□□□ -1.31
LINC00239-201ENST00000556973 FAM229AH3BQW9 127 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms