RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 H7C1H1 209 aa8.04□□□□□ -1.12
SHMT2-223ENST00000556689 NTM-AS1Q6ZSK4 140 aa8.04□□□□□ -1.12
SHMT2-223ENST00000556689 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.03□□□□□ -1.12
SHMT2-223ENST00000556689 TGIF2-C20orf24A0A0A6YYL0 155 aa8.03□□□□□ -1.12
SHMT2-223ENST00000556689 F5H697 171 aa8.03□□□□□ -1.12
SHMT2-223ENST00000556689 SCO1O75880 301 aa8.03□□□□□ -1.12
SHMT2-223ENST00000556689 GAGE6Q13070 117 aa8.03□□□□□ -1.12
SHMT2-223ENST00000556689 TMEM191AQ9H0A3 160 aa8.03□□□□□ -1.12
SHMT2-223ENST00000556689 AP5S1Q9NUS5 200 aa8.03□□□□□ -1.12
SHMT2-223ENST00000556689 TRBV25-1A0A075B6N4 114 aa8.02□□□□□ -1.13
SHMT2-223ENST00000556689 A0A1B0GXF2 115 aa8.02□□□□□ -1.13
SHMT2-223ENST00000556689 PPP1R17O96001 155 aa8.02□□□□□ -1.13
SHMT2-223ENST00000556689 LINC01600Q96MT4 127 aa8.02□□□□□ -1.13
SHMT2-223ENST00000556689 GNB1LQ9BYB4 327 aa8.02□□□□□ -1.13
SHMT2-223ENST00000556689 IGLV10-54A0A075B6I4 117 aa8.01□□□□□ -1.13
SHMT2-223ENST00000556689 TRAV8-4A0A0B4J246 113 aa8.01□□□□□ -1.13
SHMT2-223ENST00000556689 CHTF8P0CG12 524 aa8.01□□□□□ -1.13
SHMT2-223ENST00000556689 RPS10P46783 165 aaKnown RBP8.01□□□□□ -1.13
SHMT2-223ENST00000556689 REG3AQ06141 175 aa8.01□□□□□ -1.13
SHMT2-223ENST00000556689 SPACA4Q8TDM5 124 aa8.01□□□□□ -1.13
SHMT2-223ENST00000556689 C7orf33Q8WU49 177 aa8.01□□□□□ -1.13
SHMT2-223ENST00000556689 MRAP2Q96G30 205 aa8.01□□□□□ -1.13
SHMT2-223ENST00000556689 TRAPPC1Q9Y5R8 145 aa8.01□□□□□ -1.13
SHMT2-223ENST00000556689 PHOX2AO14813 284 aa8□□□□□ -1.13
SHMT2-223ENST00000556689 APCSP02743 223 aa8□□□□□ -1.13
SHMT2-223ENST00000556689 PPBPP02775 128 aa8□□□□□ -1.13
SHMT2-223ENST00000556689 SLPIP03973 132 aa8□□□□□ -1.13
SHMT2-223ENST00000556689 RAB5AP20339 215 aa8□□□□□ -1.13
SHMT2-223ENST00000556689 PLAC8Q9NZF1 115 aa8□□□□□ -1.13
SHMT2-223ENST00000556689 IQCJQ1A5X6 159 aa7.99□□□□□ -1.13
SHMT2-223ENST00000556689 GATD1Q8NB37 220 aa7.99□□□□□ -1.13
SHMT2-223ENST00000556689 MRPL18Q9H0U6 180 aaKnown RBP7.99□□□□□ -1.13
SHMT2-223ENST00000556689 IGHV1-24A0A0C4DH33 117 aa7.98□□□□□ -1.13
SHMT2-223ENST00000556689 CKS2P33552 79 aa7.98□□□□□ -1.13
SHMT2-223ENST00000556689 FABP9Q0Z7S8 132 aa7.98□□□□□ -1.13
SHMT2-223ENST00000556689 FAM104BQ5XKR9 115 aa7.98□□□□□ -1.13
SHMT2-223ENST00000556689 TMEM136Q6ZRR5 245 aa7.98□□□□□ -1.13
SHMT2-223ENST00000556689 AMN1Q8IY45 258 aa7.98□□□□□ -1.13
SHMT2-223ENST00000556689 ORMDL3Q8N138 153 aa7.98□□□□□ -1.13
SHMT2-223ENST00000556689 C20orf203Q8NBC4 194 aa7.98□□□□□ -1.13
SHMT2-223ENST00000556689 YPEL4Q96NS1 127 aa7.97□□□□□ -1.13
SHMT2-223ENST00000556689 LAMTOR2Q9Y2Q5 125 aa7.97□□□□□ -1.13
SHMT2-223ENST00000556689 KIF25-AS1Q9Y6Z4 181 aa7.97□□□□□ -1.13
SHMT2-223ENST00000556689 A0A1B0GUV1 79 aa7.96□□□□□ -1.14
SHMT2-223ENST00000556689 COLCA2A8K830 154 aa7.96□□□□□ -1.14
SHMT2-223ENST00000556689 COX6A2Q02221 97 aa7.96□□□□□ -1.14
SHMT2-223ENST00000556689 ODF1Q14990 250 aa7.96□□□□□ -1.14
SHMT2-223ENST00000556689 SUMO4Q6EEV6 95 aa7.96□□□□□ -1.14
SHMT2-223ENST00000556689 IGLV4-60A0A075B6I1 120 aa7.95□□□□□ -1.14
SHMT2-223ENST00000556689 A0A0J9YXV3 536 aa7.95□□□□□ -1.14
SHMT2-223ENST00000556689 D6R8Y8 96 aa7.95□□□□□ -1.14
SHMT2-223ENST00000556689 RAB4AP20338 218 aa7.95□□□□□ -1.14
SHMT2-223ENST00000556689 KRTAP10-8P60410 259 aa7.95□□□□□ -1.14
SHMT2-223ENST00000556689 MAJINQ3KP22 176 aa7.95□□□□□ -1.14
SHMT2-223ENST00000556689 MRPL51Q4U2R6 128 aaKnown RBP7.95□□□□□ -1.14
SHMT2-223ENST00000556689 CFAP161Q6P656 301 aa7.95□□□□□ -1.14
SHMT2-223ENST00000556689 PRELID3AQ96N28 172 aa7.95□□□□□ -1.14
SHMT2-223ENST00000556689 MAP1LC3AQ9H492 121 aa7.95□□□□□ -1.14
SHMT2-223ENST00000556689 C1orf196B1AJZ1 125 aa7.94□□□□□ -1.14
SHMT2-223ENST00000556689 PMCHP20382 165 aa7.94□□□□□ -1.14
SHMT2-223ENST00000556689 PRR3P79522 188 aaKnown RBP7.94□□□□□ -1.14
SHMT2-223ENST00000556689 TMEM243Q9BU79 118 aa7.94□□□□□ -1.14
SHMT2-223ENST00000556689 TRAV26-2A0A0B4J265 109 aa7.93□□□□□ -1.14
SHMT2-223ENST00000556689 M0QY20 66 aa7.93□□□□□ -1.14
SHMT2-223ENST00000556689 NCR2O95944 276 aa7.93□□□□□ -1.14
SHMT2-223ENST00000556689 REG3GQ6UW15 175 aa7.93□□□□□ -1.14
SHMT2-223ENST00000556689 SPINK6Q6UWN8 80 aa7.93□□□□□ -1.14
SHMT2-223ENST00000556689 STPG4Q8N801 248 aa7.93□□□□□ -1.14
SHMT2-223ENST00000556689 PRSS3P2Q8NHM4 247 aa7.93□□□□□ -1.14
SHMT2-223ENST00000556689 ST20Q9HBF5 79 aa7.93□□□□□ -1.14
SHMT2-223ENST00000556689 NIT2Q9NQR4 276 aa7.93□□□□□ -1.14
SHMT2-223ENST00000556689 IGKV2-24A0A0C4DH68 120 aa7.92□□□□□ -1.14
SHMT2-223ENST00000556689 TCAPO15273 167 aa7.92□□□□□ -1.14
SHMT2-223ENST00000556689 TRGC2P03986 189 aa7.92□□□□□ -1.14
SHMT2-223ENST00000556689 RAB5BP61020 215 aa7.92□□□□□ -1.14
SHMT2-223ENST00000556689 GAGE12HA6NDE8 117 aa7.91□□□□□ -1.14
SHMT2-223ENST00000556689 UBE2L6O14933 153 aa7.91□□□□□ -1.14
SHMT2-223ENST00000556689 GAS8-AS1O95177 125 aa7.91□□□□□ -1.14
SHMT2-223ENST00000556689 TNFRSF6BO95407 300 aa7.91□□□□□ -1.14
SHMT2-223ENST00000556689 KIAA1644Q3SXP7 199 aa7.91□□□□□ -1.14
SHMT2-223ENST00000556689 C15orf56Q8N910 161 aa7.91□□□□□ -1.14
SHMT2-223ENST00000556689 KIR2DL4Q99706 377 aa7.91□□□□□ -1.14
SHMT2-223ENST00000556689 C20orf78Q9BR46 151 aa7.91□□□□□ -1.14
SHMT2-223ENST00000556689 SMKR1H3BMG3 65 aa7.9□□□□□ -1.14
SHMT2-223ENST00000556689 FCER1GP30273 86 aa7.9□□□□□ -1.14
SHMT2-223ENST00000556689 SUMO2P61956 95 aaKnown RBP7.9□□□□□ -1.14
SHMT2-223ENST00000556689 HIGD2BQ4VC39 106 aa7.9□□□□□ -1.14
SHMT2-223ENST00000556689 NXT2Q9NPJ8 142 aaKnown RBP7.9□□□□□ -1.14
SHMT2-223ENST00000556689 TRBV6-5A0A0K0K1A5 114 aa7.89□□□□□ -1.15
SHMT2-223ENST00000556689 SRSF9Q13242 221 aaKnown RBP eCLIP7.89□□□□□ -1.15
SHMT2-223ENST00000556689 FA2HQ7L5A8 372 aa7.89□□□□□ -1.15
SHMT2-223ENST00000556689 BAGE3Q86Y29 109 aa7.89□□□□□ -1.15
SHMT2-223ENST00000556689 RPL39LQ96EH5 51 aaKnown RBP7.89□□□□□ -1.15
SHMT2-223ENST00000556689 ALKBH7Q9BT30 221 aaPredicted RBP7.89□□□□□ -1.15
SHMT2-223ENST00000556689 LINC00474Q9P2X8 69 aa7.89□□□□□ -1.15
SHMT2-223ENST00000556689 IGKV3OR2-268A0A0C4DH90 116 aa7.88□□□□□ -1.15
SHMT2-223ENST00000556689 SDHAF1A6NFY7 115 aa7.88□□□□□ -1.15
SHMT2-223ENST00000556689 I3L3M4 83 aa7.88□□□□□ -1.15
SHMT2-223ENST00000556689 K7EMI3 77 aa7.88□□□□□ -1.15
SHMT2-223ENST00000556689 VCYO14598 125 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms