RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 HIST1H2BOP23527 126 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 HIST1H2BBP33778 126 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 FOXA3P55318 350 aaPredicted RBP6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 NDUFA6P56556 154 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 HIST1H2BDP58876 126 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 HIST1H2BCP62807 126 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 HIST2H2BEQ16778 126 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 TMEM97Q5BJF2 176 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 RASL11AQ6T310 242 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 OCC1Q8TAD7 63 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 HIST1H2BHQ93079 126 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 HIST1H2BNQ99877 126 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 HIST1H2BMQ99879 126 aa6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 RPP21Q9H633 154 aaKnown RBP6.01□□□□□ -1.45
VIPAS39-207ENST00000555854 TGIF2-C20orf24A0A0A6YYL0 155 aa6□□□□□ -1.45
VIPAS39-207ENST00000555854 F2Z2F3 143 aa6□□□□□ -1.45
VIPAS39-207ENST00000555854 TRGC2P03986 189 aa6□□□□□ -1.45
VIPAS39-207ENST00000555854 TRGC1P0CF51 173 aa6□□□□□ -1.45
VIPAS39-207ENST00000555854 PKIAP61925 76 aa6□□□□□ -1.45
VIPAS39-207ENST00000555854 GATD1Q8NB37 220 aa6□□□□□ -1.45
VIPAS39-207ENST00000555854 PGLYRP4Q96LB8 373 aa6□□□□□ -1.45
VIPAS39-207ENST00000555854 OSTCQ9NRP0 149 aa6□□□□□ -1.45
VIPAS39-207ENST00000555854 IGLV10-54A0A075B6I4 117 aa5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 XKRY2A2RUG3 117 aa5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 H7C1H1 209 aa5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 MT-ND6P03923 174 aa5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 REG3AQ06141 175 aa5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 C14orf177Q52M58 125 aa5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 WDR73Q6P4I2 378 aa5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 RPL39LQ96EH5 51 aaKnown RBP5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 TMEM243Q9BU79 118 aa5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 NIT2Q9NQR4 276 aa5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.99□□□□□ -1.45
VIPAS39-207ENST00000555854 A0A1B0GUV1 79 aa5.98□□□□□ -1.45
VIPAS39-207ENST00000555854 PHOX2AO14813 284 aa5.98□□□□□ -1.45
VIPAS39-207ENST00000555854 GAS8-AS1O95177 125 aa5.98□□□□□ -1.45
VIPAS39-207ENST00000555854 PLA2G1BP04054 148 aaKnown RBP5.98□□□□□ -1.45
VIPAS39-207ENST00000555854 HNRNPA3P51991 378 aaKnown RBP5.98□□□□□ -1.45
VIPAS39-207ENST00000555854 TWIST1Q15672 202 aa5.98□□□□□ -1.45
VIPAS39-207ENST00000555854 FAM231DQ6ZW35 169 aa5.98□□□□□ -1.45
VIPAS39-207ENST00000555854 PACRGQ96M98 296 aaPredicted RBP5.98□□□□□ -1.45
VIPAS39-207ENST00000555854 SLPIP03973 132 aa5.97□□□□□ -1.45
VIPAS39-207ENST00000555854 HIST3H2BBQ8N257 126 aa5.97□□□□□ -1.45
VIPAS39-207ENST00000555854 C9orf163Q8N9P6 203 aa5.97□□□□□ -1.45
VIPAS39-207ENST00000555854 TMEM18Q96B42 140 aa5.97□□□□□ -1.45
VIPAS39-207ENST00000555854 KRTAP29-1A8MX34 341 aaPredicted RBP5.96□□□□□ -1.46
VIPAS39-207ENST00000555854 AMTP48728 403 aa5.96□□□□□ -1.46
VIPAS39-207ENST00000555854 CNBPP62633 177 aaKnown RBP5.96□□□□□ -1.46
VIPAS39-207ENST00000555854 COTL1Q14019 142 aa5.96□□□□□ -1.46
VIPAS39-207ENST00000555854 SDIM1Q6ZPB5 146 aa5.96□□□□□ -1.46
VIPAS39-207ENST00000555854 C15orf56Q8N910 161 aa5.96□□□□□ -1.46
VIPAS39-207ENST00000555854 GNB1LQ9BYB4 327 aa5.96□□□□□ -1.46
VIPAS39-207ENST00000555854 TRAPPC1Q9Y5R8 145 aa5.96□□□□□ -1.46
VIPAS39-207ENST00000555854 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.95□□□□□ -1.46
VIPAS39-207ENST00000555854 IGKV2-29A2NJV5 120 aaPredicted RBP5.95□□□□□ -1.46
VIPAS39-207ENST00000555854 FAM231BA6NCW3 169 aa5.95□□□□□ -1.46
VIPAS39-207ENST00000555854 GATCO43716 136 aaKnown RBP5.95□□□□□ -1.46
VIPAS39-207ENST00000555854 CIRBPQ14011 172 aaKnown RBP5.95□□□□□ -1.46
VIPAS39-207ENST00000555854 CT83Q5H943 113 aa5.95□□□□□ -1.46
VIPAS39-207ENST00000555854 DGAT2L7PQ6IED9 249 aa5.95□□□□□ -1.46
VIPAS39-207ENST00000555854 TRAV8-4A0A0B4J246 113 aa5.94□□□□□ -1.46
VIPAS39-207ENST00000555854 SDHAF1A6NFY7 115 aa5.94□□□□□ -1.46
VIPAS39-207ENST00000555854 ESDP10768 282 aa5.94□□□□□ -1.46
VIPAS39-207ENST00000555854 JOSD1Q15040 202 aaPredicted RBP5.94□□□□□ -1.46
VIPAS39-207ENST00000555854 OR10D4PQ8NGN7 298 aa5.94□□□□□ -1.46
VIPAS39-207ENST00000555854 RNF185Q96GF1 192 aa5.94□□□□□ -1.46
VIPAS39-207ENST00000555854 TRBV6-5A0A0K0K1A5 114 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 SMIM27A0A1W2PRY6 76 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 GAGE12HA6NDE8 117 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 TSHBP01222 138 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 APCSP02743 223 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 CHTF8P0CG12 524 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 CTAG1AP78358 180 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 ATP5L2Q7Z4Y8 100 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 HIST1H2BLQ99880 126 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 V9GYV3 84 aa5.93□□□□□ -1.46
VIPAS39-207ENST00000555854 IGKV3OR2-268A0A0C4DH90 116 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 hDV102S1A0JD36 115 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 PCP4L1A6NKN8 68 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 HIGD1CA8MV81 97 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 A8MWL6 223 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 TSTD3H0UI37 97 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 UBE2L6O14933 153 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 NCR2O95944 276 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 FGF6P10767 208 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 RPL37AP61513 92 aaKnown RBP5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 LBHQ53QV2 105 aaPredicted RBP5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 TSKUQ8WUA8 353 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 LRP2P98164 4655 aa5.92□□□□□ -1.46
VIPAS39-207ENST00000555854 SMKR1H3BMG3 65 aa5.91□□□□□ -1.46
VIPAS39-207ENST00000555854 FABP4P15090 132 aa5.91□□□□□ -1.46
VIPAS39-207ENST00000555854 RAB4AP20338 218 aa5.91□□□□□ -1.46
VIPAS39-207ENST00000555854 FOXI1Q12951 378 aa5.91□□□□□ -1.46
VIPAS39-207ENST00000555854 HIGD2BQ4VC39 106 aa5.91□□□□□ -1.46
VIPAS39-207ENST00000555854 PYY3Q5JQD4 70 aa5.91□□□□□ -1.46
VIPAS39-207ENST00000555854 AMN1Q8IY45 258 aa5.91□□□□□ -1.46
VIPAS39-207ENST00000555854 SPACA4Q8TDM5 124 aa5.91□□□□□ -1.46
VIPAS39-207ENST00000555854 CHCHD10Q8WYQ3 142 aaPredicted RBP5.91□□□□□ -1.46
VIPAS39-207ENST00000555854 TMEM191AQ9H0A3 160 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms