RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 LECT2O14960 151 aa9.47□□□□□ -0.89
CCDC88C-207ENST00000554051 NPYP01303 97 aa9.47□□□□□ -0.89
CCDC88C-207ENST00000554051 WFDC2Q14508 124 aa9.47□□□□□ -0.89
CCDC88C-207ENST00000554051 MAP1LC3AQ9H492 121 aa9.47□□□□□ -0.89
CCDC88C-207ENST00000554051 CCL25O15444 150 aa9.46□□□□□ -0.9
CCDC88C-207ENST00000554051 RAB5AP20339 215 aa9.46□□□□□ -0.9
CCDC88C-207ENST00000554051 CFAP161Q6P656 301 aa9.46□□□□□ -0.9
CCDC88C-207ENST00000554051 SVBPQ8N300 66 aa9.46□□□□□ -0.9
CCDC88C-207ENST00000554051 SPANXA1Q9NS26 97 aa9.46□□□□□ -0.9
CCDC88C-207ENST00000554051 DYNC1H1Q14204 4646 aaKnown RBP9.46□□□□□ -0.9
CCDC88C-207ENST00000554051 IGLV10-54A0A075B6I4 117 aa9.45□□□□□ -0.9
CCDC88C-207ENST00000554051 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.45□□□□□ -0.9
CCDC88C-207ENST00000554051 PRSS47A8MTI9 375 aa9.45□□□□□ -0.9
CCDC88C-207ENST00000554051 SNAPINO95295 136 aa9.45□□□□□ -0.9
CCDC88C-207ENST00000554051 MT-ND6P03923 174 aa9.45□□□□□ -0.9
CCDC88C-207ENST00000554051 KRTAP26-1Q6PEX3 210 aa9.45□□□□□ -0.9
CCDC88C-207ENST00000554051 UBE2D4Q9Y2X8 147 aa9.45□□□□□ -0.9
CCDC88C-207ENST00000554051 SS18Q15532 418 aa9.44□□□□□ -0.9
CCDC88C-207ENST00000554051 ZNF664Q8N3J9 261 aa9.44□□□□□ -0.9
CCDC88C-207ENST00000554051 CHCHD10Q8WYQ3 142 aaPredicted RBP9.44□□□□□ -0.9
CCDC88C-207ENST00000554051 RPS10P5Q9NQ39 176 aa9.44□□□□□ -0.9
CCDC88C-207ENST00000554051 CDC42SE2Q9NRR3 84 aa9.44□□□□□ -0.9
CCDC88C-207ENST00000554051 KIAA1109Q2LD37 5005 aa9.44□□□□□ -0.9
CCDC88C-207ENST00000554051 IGKV3OR2-268A0A0C4DH90 116 aa9.43□□□□□ -0.9
CCDC88C-207ENST00000554051 GNB1LQ9BYB4 327 aa9.43□□□□□ -0.9
CCDC88C-207ENST00000554051 NXT2Q9NPJ8 142 aaKnown RBP9.43□□□□□ -0.9
CCDC88C-207ENST00000554051 AP5S1Q9NUS5 200 aa9.43□□□□□ -0.9
CCDC88C-207ENST00000554051 GAGE12HA6NDE8 117 aa9.42□□□□□ -0.9
CCDC88C-207ENST00000554051 G0S2P27469 103 aa9.42□□□□□ -0.9
CCDC88C-207ENST00000554051 KRTAP10-1P60331 282 aa9.42□□□□□ -0.9
CCDC88C-207ENST00000554051 ORMDL2Q53FV1 153 aa9.42□□□□□ -0.9
CCDC88C-207ENST00000554051 Q8N8P6 123 aa9.42□□□□□ -0.9
CCDC88C-207ENST00000554051 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-207ENST00000554051 LINC00959A0A1B0GUT2 108 aa9.41□□□□□ -0.9
CCDC88C-207ENST00000554051 C1orf196B1AJZ1 125 aa9.41□□□□□ -0.9
CCDC88C-207ENST00000554051 APOC3P02656 99 aa9.41□□□□□ -0.9
CCDC88C-207ENST00000554051 IFI27P40305 119 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-207ENST00000554051 hDV102S1A0JD36 115 aa9.4□□□□□ -0.9
CCDC88C-207ENST00000554051 FUSP35637 526 aaKnown RBP eCLIP9.4□□□□□ -0.9
CCDC88C-207ENST00000554051 MRPS36P82909 103 aaKnown RBP9.4□□□□□ -0.9
CCDC88C-207ENST00000554051 PKIGQ9Y2B9 76 aa9.4□□□□□ -0.9
CCDC88C-207ENST00000554051 HERC2O95714 4834 aa9.39□□□□□ -0.91
CCDC88C-207ENST00000554051 LINC01549A6NIU2 74 aa9.39□□□□□ -0.91
CCDC88C-207ENST00000554051 PRSS1P07477 247 aa9.39□□□□□ -0.91
CCDC88C-207ENST00000554051 NPSP0C0P6 89 aa9.39□□□□□ -0.91
CCDC88C-207ENST00000554051 CNBPP62633 177 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-207ENST00000554051 CD164L2Q6UWJ8 174 aa9.39□□□□□ -0.91
CCDC88C-207ENST00000554051 CYSLTR1Q9Y271 337 aa9.39□□□□□ -0.91
CCDC88C-207ENST00000554051 PYGO1Q9Y3Y4 419 aa9.39□□□□□ -0.91
CCDC88C-207ENST00000554051 XCL1P47992 114 aa9.38□□□□□ -0.91
CCDC88C-207ENST00000554051 FOXI1Q12951 378 aa9.38□□□□□ -0.91
CCDC88C-207ENST00000554051 Q6ZSA8 131 aa9.38□□□□□ -0.91
CCDC88C-207ENST00000554051 Q6ZUT4 128 aa9.38□□□□□ -0.91
CCDC88C-207ENST00000554051 GVQW2A0A096LPI5 108 aaPredicted RBP9.37□□□□□ -0.91
CCDC88C-207ENST00000554051 IGHV1-58A0A0C4DH39 117 aa9.37□□□□□ -0.91
CCDC88C-207ENST00000554051 Q8N1X5 172 aa9.37□□□□□ -0.91
CCDC88C-207ENST00000554051 RYR1P21817 5038 aa9.37□□□□□ -0.91
CCDC88C-207ENST00000554051 LRP1BQ9NZR2 4599 aa9.36□□□□□ -0.91
CCDC88C-207ENST00000554051 LOC389332A0A1B0GUA5 103 aa9.36□□□□□ -0.91
CCDC88C-207ENST00000554051 RPL39P62891 51 aaKnown RBP9.36□□□□□ -0.91
CCDC88C-207ENST00000554051 PAPPA-AS1Q5QFB9 102 aa9.36□□□□□ -0.91
CCDC88C-207ENST00000554051 Q6ZN92 141 aa9.36□□□□□ -0.91
CCDC88C-207ENST00000554051 C15orf56Q8N910 161 aa9.36□□□□□ -0.91
CCDC88C-207ENST00000554051 C9orf163Q8N9P6 203 aa9.36□□□□□ -0.91
CCDC88C-207ENST00000554051 DNAH5Q8TE73 4624 aa9.35□□□□□ -0.91
CCDC88C-207ENST00000554051 TRAV13-1A0A0B4J241 112 aa9.35□□□□□ -0.91
CCDC88C-207ENST00000554051 C2orf66Q6UXQ4 117 aa9.35□□□□□ -0.91
CCDC88C-207ENST00000554051 MRPL18Q9H0U6 180 aaKnown RBP9.35□□□□□ -0.91
CCDC88C-207ENST00000554051 IFITM10A6NMD0 228 aa9.34□□□□□ -0.91
CCDC88C-207ENST00000554051 COX7A2LO14548 114 aa9.34□□□□□ -0.91
CCDC88C-207ENST00000554051 APOMO95445 188 aa9.34□□□□□ -0.91
CCDC88C-207ENST00000554051 MALP21145 153 aa9.34□□□□□ -0.91
CCDC88C-207ENST00000554051 TMEM141Q96I45 108 aa9.34□□□□□ -0.91
CCDC88C-207ENST00000554051 C2orf88Q9BSF0 95 aa9.34□□□□□ -0.91
CCDC88C-207ENST00000554051 IGHV3-64A0A075B6Q5 118 aa9.33□□□□□ -0.92
CCDC88C-207ENST00000554051 XGP55808 180 aa9.33□□□□□ -0.92
CCDC88C-207ENST00000554051 TEX43Q6ZNM6 134 aa9.33□□□□□ -0.92
CCDC88C-207ENST00000554051 PRSS3P2Q8NHM4 247 aa9.33□□□□□ -0.92
CCDC88C-207ENST00000554051 ALKBH7Q9BT30 221 aaPredicted RBP9.33□□□□□ -0.92
CCDC88C-207ENST00000554051 FABP9Q0Z7S8 132 aa9.32□□□□□ -0.92
CCDC88C-207ENST00000554051 KIAA1644Q3SXP7 199 aa9.32□□□□□ -0.92
CCDC88C-207ENST00000554051 RNASE13Q5GAN3 156 aaKnown RBP9.32□□□□□ -0.92
CCDC88C-207ENST00000554051 IGLV4-3A0A075B6K6 122 aa9.31□□□□□ -0.92
CCDC88C-207ENST00000554051 TGIF2-C20orf24A0A0A6YYL0 155 aa9.31□□□□□ -0.92
CCDC88C-207ENST00000554051 EPM2AB3EWF7 344 aa9.31□□□□□ -0.92
CCDC88C-207ENST00000554051 ZNF561-AS1K7EIQ3 104 aa9.31□□□□□ -0.92
CCDC88C-207ENST00000554051 TIMM17AQ99595 171 aa9.31□□□□□ -0.92
CCDC88C-207ENST00000554051 SMCO4Q9NRQ5 59 aa9.31□□□□□ -0.92
CCDC88C-207ENST00000554051 TRAPPC1Q9Y5R8 145 aa9.31□□□□□ -0.92
CCDC88C-207ENST00000554051 LINC01546A6NGU7 62 aa9.3□□□□□ -0.92
CCDC88C-207ENST00000554051 HIGD2BQ4VC39 106 aa9.3□□□□□ -0.92
CCDC88C-207ENST00000554051 FA2HQ7L5A8 372 aa9.3□□□□□ -0.92
CCDC88C-207ENST00000554051 OR10D4PQ8NGN7 298 aa9.3□□□□□ -0.92
CCDC88C-207ENST00000554051 CHAC1Q9BUX1 264 aa9.3□□□□□ -0.92
CCDC88C-207ENST00000554051 F8WDY8 70 aa9.29□□□□□ -0.92
CCDC88C-207ENST00000554051 SEC11AP67812 179 aa9.29□□□□□ -0.92
CCDC88C-207ENST00000554051 LINC01620Q4KN68 170 aa9.29□□□□□ -0.92
CCDC88C-207ENST00000554051 TOMM6Q96B49 74 aa9.29□□□□□ -0.92
CCDC88C-207ENST00000554051 VCX2Q9H322 139 aa9.29□□□□□ -0.92
CCDC88C-207ENST00000554051 FAM30AQ9NZY2 134 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms