RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 IGHV3-48P01763 117 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 MIAQ16674 131 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 ESRGQ1W209 222 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 ZNF876PQ49A33 203 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 CD164L2Q6UWJ8 174 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 TMEM141Q96I45 108 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 SPRR3Q9UBC9 169 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 ATRQ13535 2644 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 TRBV10-3A0A0K0K1G6 114 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 ADARB2-AS1A8MUL3 147 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 ZNF80P51504 273 aaPredicted RBP6.86□□□□□ -1.31
PTCH1-220ENST00000550136 PVRIGQ6DKI7 326 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 C1orf229Q6ZS94 237 aaPredicted RBP6.86□□□□□ -1.31
PTCH1-220ENST00000550136 C11orf44Q8N8P7 122 aa6.86□□□□□ -1.31
PTCH1-220ENST00000550136 FBN1P35555 2871 aaKnown RBP6.85□□□□□ -1.31
PTCH1-220ENST00000550136 ZNF469Q96JG9 3925 aaPredicted RBP6.85□□□□□ -1.31
PTCH1-220ENST00000550136 TRBV27A0A0K0K1C4 114 aa6.84□□□□□ -1.31
PTCH1-220ENST00000550136 K7EMT4 169 aa6.84□□□□□ -1.31
PTCH1-220ENST00000550136 DEFB126Q9BYW3 111 aa6.84□□□□□ -1.31
PTCH1-220ENST00000550136 SNURFQ9Y675 71 aa6.84□□□□□ -1.31
PTCH1-220ENST00000550136 OBSCN-AS1Q96MR7 158 aa6.84□□□□□ -1.31
PTCH1-220ENST00000550136 CNTRLQ7Z7A1 2325 aa6.84□□□□□ -1.32
PTCH1-220ENST00000550136 SEC16AO15027 2179 aa6.84□□□□□ -1.32
PTCH1-220ENST00000550136 C8orf87E5RJ46 101 aa6.83□□□□□ -1.32
PTCH1-220ENST00000550136 LY6G6DO95868 133 aa6.83□□□□□ -1.32
PTCH1-220ENST00000550136 SAA2P0DJI9 122 aaPredicted RBP6.83□□□□□ -1.32
PTCH1-220ENST00000550136 TIMM17AQ99595 171 aa6.83□□□□□ -1.32
PTCH1-220ENST00000550136 IGHV4-4A0A075B6R2 117 aa6.83□□□□□ -1.32
PTCH1-220ENST00000550136 SAA1P0DJI8 122 aaPredicted RBP6.83□□□□□ -1.32
PTCH1-220ENST00000550136 WT1-ASQ06250 92 aa6.83□□□□□ -1.32
PTCH1-220ENST00000550136 IGKV1D-17A0A075B6S4 117 aa6.82□□□□□ -1.32
PTCH1-220ENST00000550136 M0R378 163 aa6.82□□□□□ -1.32
PTCH1-220ENST00000550136 RNASE4P34096 147 aaKnown RBP6.82□□□□□ -1.32
PTCH1-220ENST00000550136 LYZP61626 148 aa6.82□□□□□ -1.32
PTCH1-220ENST00000550136 PDE6HQ13956 83 aa6.82□□□□□ -1.32
PTCH1-220ENST00000550136 VMO1Q7Z5L0 202 aa6.82□□□□□ -1.32
PTCH1-220ENST00000550136 HIST2H2BDQ6DRA6 164 aa6.82□□□□□ -1.32
PTCH1-220ENST00000550136 C14orf132Q9NPU4 83 aa6.82□□□□□ -1.32
PTCH1-220ENST00000550136 FREM1Q5H8C1 2179 aa6.81□□□□□ -1.32
PTCH1-220ENST00000550136 PRB4P10163 310 aaPredicted RBP6.81□□□□□ -1.32
PTCH1-220ENST00000550136 MIFP14174 115 aa6.81□□□□□ -1.32
PTCH1-220ENST00000550136 Q1T7F1 81 aa6.81□□□□□ -1.32
PTCH1-220ENST00000550136 LINC00588Q9Y4M8 146 aa6.81□□□□□ -1.32
PTCH1-220ENST00000550136 MXRA5Q9NR99 2828 aa6.81□□□□□ -1.32
PTCH1-220ENST00000550136 M0R381 172 aa6.81□□□□□ -1.32
PTCH1-220ENST00000550136 DEFB113Q30KQ7 82 aa6.81□□□□□ -1.32
PTCH1-220ENST00000550136 IGKV2-40A0A087WW87 121 aaPredicted RBP6.8□□□□□ -1.32
PTCH1-220ENST00000550136 E7EQL1 145 aa6.8□□□□□ -1.32
PTCH1-220ENST00000550136 H3BRN7 92 aa6.8□□□□□ -1.32
PTCH1-220ENST00000550136 ZNHIT1O43257 154 aa6.8□□□□□ -1.32
PTCH1-220ENST00000550136 NDUFS5O43920 106 aa6.8□□□□□ -1.32
PTCH1-220ENST00000550136 IGKV2D-40P01614 121 aaPredicted RBP6.8□□□□□ -1.32
PTCH1-220ENST00000550136 A0A087WZ39 114 aa6.8□□□□□ -1.32
PTCH1-220ENST00000550136 IGKV1-16P04430 117 aa6.8□□□□□ -1.32
PTCH1-220ENST00000550136 KRTAP1-3Q8IUG1 177 aa6.8□□□□□ -1.32
PTCH1-220ENST00000550136 ENHOQ6UWT2 76 aa6.79□□□□□ -1.32
PTCH1-220ENST00000550136 IGHV7-4-1A0A0J9YVY3 117 aa6.79□□□□□ -1.32
PTCH1-220ENST00000550136 PPP1R17O96001 155 aa6.79□□□□□ -1.32
PTCH1-220ENST00000550136 Q6ZVQ6 151 aa6.79□□□□□ -1.32
PTCH1-220ENST00000550136 WFDC9Q8NEX5 89 aa6.79□□□□□ -1.32
PTCH1-220ENST00000550136 Q8TAT8 98 aa6.79□□□□□ -1.32
PTCH1-220ENST00000550136 DEFB127Q9H1M4 99 aa6.79□□□□□ -1.32
PTCH1-220ENST00000550136 IGHV3-64A0A075B6Q5 118 aa6.78□□□□□ -1.32
PTCH1-220ENST00000550136 LYRM9A8MSI8 78 aa6.78□□□□□ -1.32
PTCH1-220ENST00000550136 SOCS3O14543 225 aa6.78□□□□□ -1.32
PTCH1-220ENST00000550136 PRR26Q8N8Z3 221 aa6.78□□□□□ -1.32
PTCH1-220ENST00000550136 INAFM1C9JVW0 142 aa6.77□□□□□ -1.32
PTCH1-220ENST00000550136 IGHV1-69P01742 117 aa6.77□□□□□ -1.32
PTCH1-220ENST00000550136 IGHV3-30-3P0DP02 117 aa6.77□□□□□ -1.32
PTCH1-220ENST00000550136 OXLD1Q5BKU9 147 aa6.77□□□□□ -1.32
PTCH1-220ENST00000550136 SPANXN1Q5VSR9 72 aa6.77□□□□□ -1.32
PTCH1-220ENST00000550136 DYNLRB2Q8TF09 96 aa6.77□□□□□ -1.32
PTCH1-220ENST00000550136 RPL39LQ96EH5 51 aaKnown RBP6.77□□□□□ -1.32
PTCH1-220ENST00000550136 FAM218AQ96MZ4 157 aa6.77□□□□□ -1.32
PTCH1-220ENST00000550136 OVOL2Q9BRP0 275 aa6.77□□□□□ -1.32
PTCH1-220ENST00000550136 AKAP6Q13023 2319 aa6.77□□□□□ -1.33
PTCH1-220ENST00000550136 IGKV3D-20A0A0C4DH25 116 aa6.77□□□□□ -1.33
PTCH1-220ENST00000550136 TFF1P04155 84 aa6.77□□□□□ -1.33
PTCH1-220ENST00000550136 VPREB1P12018 145 aa6.77□□□□□ -1.33
PTCH1-220ENST00000550136 TMEM167AQ8TBQ9 72 aa6.77□□□□□ -1.33
PTCH1-220ENST00000550136 TNCP24821 2201 aa6.77□□□□□ -1.33
PTCH1-220ENST00000550136 HIVEP2P31629 2446 aa6.77□□□□□ -1.33
PTCH1-220ENST00000550136 TMEM256-PLSCR3K7ERE1 68 aa6.76□□□□□ -1.33
PTCH1-220ENST00000550136 ZNF73O43830 326 aaPredicted RBP6.76□□□□□ -1.33
PTCH1-220ENST00000550136 UBE2BP63146 152 aa6.76□□□□□ -1.33
PTCH1-220ENST00000550136 IGHV3-20A0A0C4DH32 117 aa6.76□□□□□ -1.33
PTCH1-220ENST00000550136 NDPQ00604 133 aa6.76□□□□□ -1.33
PTCH1-220ENST00000550136 C9orf129Q5T035 196 aaKnown RBP6.76□□□□□ -1.33
PTCH1-220ENST00000550136 CXorf67Q86X51 503 aaPredicted RBP6.76□□□□□ -1.33
PTCH1-220ENST00000550136 PHLDA3Q9Y5J5 127 aa6.76□□□□□ -1.33
PTCH1-220ENST00000550136 TRBV7-4A0A0J9YYF1 115 aa6.75□□□□□ -1.33
PTCH1-220ENST00000550136 LEAP2Q969E1 77 aa6.75□□□□□ -1.33
PTCH1-220ENST00000550136 ARHGAP32A7KAX9 2087 aa6.75□□□□□ -1.33
PTCH1-220ENST00000550136 C10orf55Q5SWW7 151 aa6.75□□□□□ -1.33
PTCH1-220ENST00000550136 PHF5AQ7RTV0 110 aaKnown RBP6.75□□□□□ -1.33
PTCH1-220ENST00000550136 Q9HAA7 133 aa6.75□□□□□ -1.33
PTCH1-220ENST00000550136 NDUFA12Q9UI09 145 aa6.75□□□□□ -1.33
PTCH1-220ENST00000550136 ZNF580Q9UK33 172 aa6.75□□□□□ -1.33
PTCH1-220ENST00000550136 RPL39P62891 51 aaKnown RBP6.74□□□□□ -1.33
PTCH1-220ENST00000550136 A0A096LPE4 126 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms