RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 TSHBP01222 138 aa8.61□□□□□ -1.03
PRPF40B-210ENST00000549547 SMAGPQ0VAQ4 97 aa8.61□□□□□ -1.03
PRPF40B-210ENST00000549547 COX19Q49B96 90 aa8.61□□□□□ -1.03
PRPF40B-210ENST00000549547 RNASEKQ6P5S7 137 aaKnown RBP8.61□□□□□ -1.03
PRPF40B-210ENST00000549547 C20orf203Q8NBC4 194 aa8.61□□□□□ -1.03
PRPF40B-210ENST00000549547 BAALCQ8WXS3 180 aa8.61□□□□□ -1.03
PRPF40B-210ENST00000549547 TMEM101Q96IK0 257 aa8.61□□□□□ -1.03
PRPF40B-210ENST00000549547 RYR1P21817 5038 aa8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 IGLV4-60A0A075B6I1 120 aa8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 IGKV2-29A2NJV5 120 aaPredicted RBP8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 D6R8Y8 96 aa8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 FGF6P10767 208 aa8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 ESDP10768 282 aa8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 RPL32P62910 135 aaKnown RBP8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 C14orf177Q52M58 125 aa8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 CLPSL2Q6UWE3 100 aa8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 ORMDL3Q8N138 153 aa8.6□□□□□ -1.03
PRPF40B-210ENST00000549547 TNFRSF6BO95407 300 aa8.59□□□□□ -1.03
PRPF40B-210ENST00000549547 HLA-DQA1P01909 254 aa8.59□□□□□ -1.03
PRPF40B-210ENST00000549547 TRGC2P03986 189 aa8.59□□□□□ -1.03
PRPF40B-210ENST00000549547 GCSHP23434 173 aa8.59□□□□□ -1.03
PRPF40B-210ENST00000549547 MAPKAPK5-AS1Q8N8E1 139 aa8.59□□□□□ -1.03
PRPF40B-210ENST00000549547 TRAPPC1Q9Y5R8 145 aa8.59□□□□□ -1.03
PRPF40B-210ENST00000549547 APOBP04114 4563 aaKnown RBP8.58□□□□□ -1.04
PRPF40B-210ENST00000549547 LECT2O14960 151 aa8.58□□□□□ -1.04
PRPF40B-210ENST00000549547 MT-ND6P03923 174 aa8.58□□□□□ -1.04
PRPF40B-210ENST00000549547 FABP9Q0Z7S8 132 aa8.58□□□□□ -1.04
PRPF40B-210ENST00000549547 WFDC2Q14508 124 aa8.58□□□□□ -1.04
PRPF40B-210ENST00000549547 TMEM18Q96B42 140 aa8.58□□□□□ -1.04
PRPF40B-210ENST00000549547 MRPL18Q9H0U6 180 aaKnown RBP8.58□□□□□ -1.04
PRPF40B-210ENST00000549547 LAMTOR2Q9Y2Q5 125 aa8.58□□□□□ -1.04
PRPF40B-210ENST00000549547 CBY1Q9Y3M2 126 aa8.58□□□□□ -1.04
PRPF40B-210ENST00000549547 C5orf52A6NGY3 159 aa8.57□□□□□ -1.04
PRPF40B-210ENST00000549547 DGAT2L7PQ6IED9 249 aa8.57□□□□□ -1.04
PRPF40B-210ENST00000549547 MRPL52Q86TS9 123 aaKnown RBP8.57□□□□□ -1.04
PRPF40B-210ENST00000549547 OR5A1Q8NGJ0 315 aa8.57□□□□□ -1.04
PRPF40B-210ENST00000549547 PRELID3AQ96N28 172 aa8.57□□□□□ -1.04
PRPF40B-210ENST00000549547 SMIM2Q9BVW6 85 aa8.57□□□□□ -1.04
PRPF40B-210ENST00000549547 IGLV10-54A0A075B6I4 117 aa8.56□□□□□ -1.04
PRPF40B-210ENST00000549547 NPYP01303 97 aa8.56□□□□□ -1.04
PRPF40B-210ENST00000549547 FUSP35637 526 aaKnown RBP eCLIP8.56□□□□□ -1.04
PRPF40B-210ENST00000549547 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.55□□□□□ -1.04
PRPF40B-210ENST00000549547 KIAA1644Q3SXP7 199 aa8.55□□□□□ -1.04
PRPF40B-210ENST00000549547 HSPG2P98160 4391 aa8.54□□□□□ -1.04
PRPF40B-210ENST00000549547 USP17L23D6RBM5 183 aa8.54□□□□□ -1.04
PRPF40B-210ENST00000549547 KRTAP26-1Q6PEX3 210 aa8.54□□□□□ -1.04
PRPF40B-210ENST00000549547 MAP1LC3AQ9H492 121 aa8.54□□□□□ -1.04
PRPF40B-210ENST00000549547 CSDC2Q9Y534 153 aaKnown RBP8.54□□□□□ -1.04
PRPF40B-210ENST00000549547 IGKV3OR2-268A0A0C4DH90 116 aa8.53□□□□□ -1.04
PRPF40B-210ENST00000549547 KRTAP10-1P60331 282 aa8.53□□□□□ -1.04
PRPF40B-210ENST00000549547 ZNF664Q8N3J9 261 aa8.53□□□□□ -1.04
PRPF40B-210ENST00000549547 TIMM21Q9BVV7 248 aa8.53□□□□□ -1.04
PRPF40B-210ENST00000549547 CDC42SE2Q9NRR3 84 aa8.53□□□□□ -1.04
PRPF40B-210ENST00000549547 DNAH8Q96JB1 4490 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 PRSS47A8MTI9 375 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST1H2BKO60814 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST1H2BJP06899 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST1H2BOP23527 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 S100A2P29034 98 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST1H2BBP33778 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST1H2BDP58876 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 SNRPEP62304 92 aaKnown RBP8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST1H2BCP62807 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST2H2BEQ16778 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 CFAP161Q6P656 301 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST1H2BHQ93079 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST1H2BNQ99877 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 HIST1H2BMQ99879 126 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 ALKBH7Q9BT30 221 aaPredicted RBP8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 UBE2D4Q9Y2X8 147 aa8.52□□□□□ -1.05
PRPF40B-210ENST00000549547 GAGE12HA6NDE8 117 aa8.51□□□□□ -1.05
PRPF40B-210ENST00000549547 TSTD3H0UI37 97 aa8.51□□□□□ -1.05
PRPF40B-210ENST00000549547 CCL25O15444 150 aa8.51□□□□□ -1.05
PRPF40B-210ENST00000549547 SS18Q15532 418 aa8.51□□□□□ -1.05
PRPF40B-210ENST00000549547 CHCHD10Q8WYQ3 142 aaPredicted RBP8.51□□□□□ -1.05
PRPF40B-210ENST00000549547 LINC00959A0A1B0GUT2 108 aa8.5□□□□□ -1.05
PRPF40B-210ENST00000549547 K7EMI3 77 aa8.5□□□□□ -1.05
PRPF40B-210ENST00000549547 C2orf88Q9BSF0 95 aa8.5□□□□□ -1.05
PRPF40B-210ENST00000549547 SPANXA1Q9NS26 97 aa8.5□□□□□ -1.05
PRPF40B-210ENST00000549547 LOC389332A0A1B0GUA5 103 aa8.49□□□□□ -1.05
PRPF40B-210ENST00000549547 Q8N8P6 123 aa8.49□□□□□ -1.05
PRPF40B-210ENST00000549547 NXT2Q9NPJ8 142 aaKnown RBP8.49□□□□□ -1.05
PRPF40B-210ENST00000549547 AP5S1Q9NUS5 200 aa8.49□□□□□ -1.05
PRPF40B-210ENST00000549547 hDV102S1A0JD36 115 aa8.48□□□□□ -1.05
PRPF40B-210ENST00000549547 PRSS1P07477 247 aa8.48□□□□□ -1.05
PRPF40B-210ENST00000549547 ORMDL2Q53FV1 153 aa8.48□□□□□ -1.05
PRPF40B-210ENST00000549547 C18orf32Q8TCD1 76 aa8.48□□□□□ -1.05
PRPF40B-210ENST00000549547 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.47□□□□□ -1.05
PRPF40B-210ENST00000549547 G0S2P27469 103 aa8.47□□□□□ -1.05
PRPF40B-210ENST00000549547 IFI27P40305 119 aaPredicted RBP8.47□□□□□ -1.05
PRPF40B-210ENST00000549547 XCL1P47992 114 aa8.47□□□□□ -1.05
PRPF40B-210ENST00000549547 RPL39P62891 51 aaKnown RBP8.47□□□□□ -1.05
PRPF40B-210ENST00000549547 MRPS36P82909 103 aaKnown RBP8.47□□□□□ -1.05
PRPF40B-210ENST00000549547 ANKRD39Q53RE8 183 aa8.47□□□□□ -1.05
PRPF40B-210ENST00000549547 XGP55808 180 aa8.46□□□□□ -1.06
PRPF40B-210ENST00000549547 LINC00310P59036 64 aa8.46□□□□□ -1.06
PRPF40B-210ENST00000549547 CNBPP62633 177 aaKnown RBP8.46□□□□□ -1.06
PRPF40B-210ENST00000549547 FOXI1Q12951 378 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms