RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 WDR61Q9GZS3 305 aaKnown RBP3.83□□□□□ -1.8
LIMA1-204ENST00000549064 PHLDA3Q9Y5J5 127 aa3.83□□□□□ -1.8
LIMA1-204ENST00000549064 TMSB15BA0A087X1C1 80 aa3.82□□□□□ -1.8
LIMA1-204ENST00000549064 GVQW2A0A096LPI5 108 aaPredicted RBP3.82□□□□□ -1.8
LIMA1-204ENST00000549064 TRAV1-1A0A0B4J248 108 aa3.82□□□□□ -1.8
LIMA1-204ENST00000549064 TPT1P13693 172 aaKnown RBP3.82□□□□□ -1.8
LIMA1-204ENST00000549064 SULT1A2P50226 295 aa3.82□□□□□ -1.8
LIMA1-204ENST00000549064 RAB4BP61018 213 aa3.82□□□□□ -1.8
LIMA1-204ENST00000549064 IQCJQ1A5X6 159 aa3.82□□□□□ -1.8
LIMA1-204ENST00000549064 AQP10Q96PS8 301 aa3.82□□□□□ -1.8
LIMA1-204ENST00000549064 RETNLBQ9BQ08 111 aa3.82□□□□□ -1.8
LIMA1-204ENST00000549064 IGHV1-24A0A0C4DH33 117 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 FABP5P3A8MUU1 101 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 KRBOX1C9JBD0 128 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 SERF1AO75920 110 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 SNAPINO95295 136 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 STAG3L2P0CL84 134 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 CRIP1P50238 77 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 DEFA3P59666 94 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 TMEM97Q5BJF2 176 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 DNLZQ5SXM8 178 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 KRTAP11-1Q8IUC1 163 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 ZFP82Q8N141 532 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-204ENST00000549064 C5orf17Q8NAS9 161 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 CARD19Q96LW7 228 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 KCNIP2Q9NS61 270 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 ARL2-SNX15V9GYD0 113 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 V9GYH0 126 aa3.81□□□□□ -1.8
LIMA1-204ENST00000549064 A0A1W2PPV4 95 aa3.8□□□□□ -1.8
LIMA1-204ENST00000549064 C17orf112F2Z3M2 114 aa3.8□□□□□ -1.8
LIMA1-204ENST00000549064 SH2D1AO60880 128 aa3.8□□□□□ -1.8
LIMA1-204ENST00000549064 IL15RAQ13261 267 aa3.8□□□□□ -1.8
LIMA1-204ENST00000549064 C9orf116Q5BN46 136 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-204ENST00000549064 SAPCD1Q5SSQ6 148 aa3.8□□□□□ -1.8
LIMA1-204ENST00000549064 NKAPP1Q8N9T2 125 aa3.8□□□□□ -1.8
LIMA1-204ENST00000549064 DEDD2Q8WXF8 326 aa3.8□□□□□ -1.8
LIMA1-204ENST00000549064 SDHCQ99643 169 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-204ENST00000549064 KRTAP4-2Q9BYR5 136 aa3.8□□□□□ -1.8
LIMA1-204ENST00000549064 MUC21A0A140T8X8 626 aa3.79□□□□□ -1.8
LIMA1-204ENST00000549064 ARL14EPLP0DKL9 152 aa3.79□□□□□ -1.8
LIMA1-204ENST00000549064 BCL2P10415 239 aa3.79□□□□□ -1.8
LIMA1-204ENST00000549064 TMBIM6P55061 237 aa3.79□□□□□ -1.8
LIMA1-204ENST00000549064 EIF5AP63241 154 aaKnown RBP3.79□□□□□ -1.8
LIMA1-204ENST00000549064 OR10AG1Q8NH19 301 aa3.79□□□□□ -1.8
LIMA1-204ENST00000549064 SEC22CQ9BRL7 303 aa3.79□□□□□ -1.8
LIMA1-204ENST00000549064 TMEM243Q9BU79 118 aa3.79□□□□□ -1.8
LIMA1-204ENST00000549064 MRPS26Q9BYN8 205 aaKnown RBP3.79□□□□□ -1.8
LIMA1-204ENST00000549064 KRTAP4-1Q9BYQ7 146 aa3.79□□□□□ -1.8
LIMA1-204ENST00000549064 EPDR1Q9UM22 224 aa3.79□□□□□ -1.8
LIMA1-204ENST00000549064 A0A0J9YXY3 114 aa3.78□□□□□ -1.8
LIMA1-204ENST00000549064 SYCNQ0VAF6 134 aa3.78□□□□□ -1.8
LIMA1-204ENST00000549064 Q86TA4 180 aa3.78□□□□□ -1.8
LIMA1-204ENST00000549064 PKIGQ9Y2B9 76 aa3.78□□□□□ -1.8
LIMA1-204ENST00000549064 LOC107984640A0A0U1RRK4 108 aa3.77□□□□□ -1.81
LIMA1-204ENST00000549064 NAP1L6A6NFF2 107 aa3.77□□□□□ -1.81
LIMA1-204ENST00000549064 RPL12P30050 165 aaKnown RBP3.77□□□□□ -1.81
LIMA1-204ENST00000549064 TPRXLQ17RH7 258 aa3.77□□□□□ -1.81
LIMA1-204ENST00000549064 ZNF471Q9BX82 626 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-204ENST00000549064 SMIM3Q9BZL3 60 aa3.77□□□□□ -1.81
LIMA1-204ENST00000549064 UBE2L6O14933 153 aa3.76□□□□□ -1.81
LIMA1-204ENST00000549064 CRYGAP11844 174 aa3.76□□□□□ -1.81
LIMA1-204ENST00000549064 GCHFRP30047 84 aa3.76□□□□□ -1.81
LIMA1-204ENST00000549064 XCL1P47992 114 aa3.76□□□□□ -1.81
LIMA1-204ENST00000549064 NKX2-5P52952 324 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-204ENST00000549064 KIAA0087Q14695 138 aa3.76□□□□□ -1.81
LIMA1-204ENST00000549064 CEND1Q8N111 149 aa3.76□□□□□ -1.81
LIMA1-204ENST00000549064 RPP21Q9H633 154 aaKnown RBP3.76□□□□□ -1.81
LIMA1-204ENST00000549064 TRAV6A0A075B6T7 132 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 IGHV1-58A0A0C4DH39 117 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 FAM168BA1KXE4 195 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-204ENST00000549064 M0QY20 66 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 SIX6O95475 246 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 MGPP08493 103 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 FGF6P10767 208 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 MT3P25713 68 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 CDC34P49427 236 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-204ENST00000549064 MEF2BQ02080 365 aaPredicted RBP3.75□□□□□ -1.81
LIMA1-204ENST00000549064 RPL18AQ02543 176 aaKnown RBP3.75□□□□□ -1.81
LIMA1-204ENST00000549064 FAM162BQ5T6X4 162 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 SCGB1C1Q8TD33 95 aa3.75□□□□□ -1.81
LIMA1-204ENST00000549064 CARHSP1Q9Y2V2 147 aaKnown RBP3.75□□□□□ -1.81
LIMA1-204ENST00000549064 IGLV4-69A0A075B6H9 119 aa3.74□□□□□ -1.81
LIMA1-204ENST00000549064 CCL25O15444 150 aa3.74□□□□□ -1.81
LIMA1-204ENST00000549064 BCL2L11O43521 198 aa3.74□□□□□ -1.81
LIMA1-204ENST00000549064 GIPP09681 153 aaPredicted RBP3.74□□□□□ -1.81
LIMA1-204ENST00000549064 PMCHP20382 165 aa3.74□□□□□ -1.81
LIMA1-204ENST00000549064 SPANXN1Q5VSR9 72 aa3.74□□□□□ -1.81
LIMA1-204ENST00000549064 TRIQKQ629K1 86 aa3.74□□□□□ -1.81
LIMA1-204ENST00000549064 NUP35Q8NFH5 326 aa3.74□□□□□ -1.81
LIMA1-204ENST00000549064 WFDC1Q9HC57 220 aa3.74□□□□□ -1.81
LIMA1-204ENST00000549064 HSPB11Q9Y547 144 aa3.74□□□□□ -1.81
LIMA1-204ENST00000549064 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-204ENST00000549064 IGKV2-29A2NJV5 120 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-204ENST00000549064 SMKR1H3BMG3 65 aa3.73□□□□□ -1.81
LIMA1-204ENST00000549064 PEX7O00628 323 aa3.73□□□□□ -1.81
LIMA1-204ENST00000549064 SNAI2O43623 268 aa3.73□□□□□ -1.81
LIMA1-204ENST00000549064 HSBP1O75506 76 aa3.73□□□□□ -1.81
LIMA1-204ENST00000549064 APOMO95445 188 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms