RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RGPD3A6NKT7 1758 aaPredicted RBP0.34□□□□□ -2.35
VPS29-205ENST00000548539 KDM3BQ7LBC6 1761 aa0.34□□□□□ -2.35
VPS29-205ENST00000548539 RGPD4Q7Z3J3 1758 aa0.34□□□□□ -2.35
VPS29-205ENST00000548539 F5P12259 2224 aa0.34□□□□□ -2.35
VPS29-205ENST00000548539 ASXL3Q9C0F0 2248 aa0.34□□□□□ -2.35
VPS29-205ENST00000548539 ANKRD36BQ8N2N9 1353 aa0.34□□□□□ -2.35
VPS29-205ENST00000548539 KIF1AQ12756 1690 aa0.34□□□□□ -2.35
VPS29-205ENST00000548539 K7EP34 96 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 APOC4-APOC2K7ER74 178 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 CHD1O14646 1710 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 PDCD5O14737 125 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 SFT2D2O95562 160 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 APOC2P02655 101 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 IGLC2P0DOY2 106 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 IGLC3P0DOY3 106 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 FAUP35544 74 aaKnown RBP0.34□□□□□ -2.36
VPS29-205ENST00000548539 ASIPP42127 132 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 ADAMTS12P58397 1594 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 DEFA5Q01523 94 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 ETDBQ3ZM63 59 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 BVES-AS1Q5T3Y7 98 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 FAM223AQ8IWN6 122 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 LCN9Q8WX39 176 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 DPY30Q9C005 99 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 Q9H521 79 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 DIP2BQ9P265 1576 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 ARFGEF2Q9Y6D5 1785 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 CFTRP13569 1480 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 ERVK-7P63135 1459 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 BTAF1O14981 1849 aa0.34□□□□□ -2.36
VPS29-205ENST00000548539 ARHGAP5Q13017 1502 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 MAP3K1Q13233 1512 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 FAM135AQ9P2D6 1515 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 UBR3Q6ZT12 1888 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 NRXN2Q9P2S2 1712 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 SSC5DA1L4H1 1573 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 RB1CC1Q8TDY2 1594 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 CPSF1Q10570 1443 aaKnown RBP0.33□□□□□ -2.36
VPS29-205ENST00000548539 NAIPQ13075 1403 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 MYOM3Q5VTT5 1437 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 SCAPERQ9BY12 1400 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 LTN1O94822 1766 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 SMIM31A0A1B0GVY4 71 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 FAM223BA6NKX1 122 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 HCG22E2RYF7 251 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 H3BUT2 72 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 H7BZZ5 65 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 SIX6O95475 246 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 CYB5AP00167 134 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 S100A3P33764 101 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 SEC11AP67812 179 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 PEA15Q15121 130 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 Q5VV11 94 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 HEPN1Q6WQI6 88 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 Q6ZRX8 168 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 C5orf38Q86SI9 138 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 SVBPQ8N300 66 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 S100A16Q96FQ6 103 aaKnown RBP0.33□□□□□ -2.36
VPS29-205ENST00000548539 PMCHL2Q9BQD1 86 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 SPANXDQ9BXN6 97 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 NAA60Q9H7X0 242 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 CCDC167Q9P0B6 97 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 IQGAP3Q86VI3 1631 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 CCDC88BA6NC98 1476 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 CCDC18Q5T9S5 1454 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 IFT140Q96RY7 1462 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 PRXQ9BXM0 1461 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 SHANK2Q9UPX8 1470 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 KIF20BQ96Q89 1820 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 ZNF831Q5JPB2 1677 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 ZC3H13Q5T200 1668 aaKnown RBP0.33□□□□□ -2.36
VPS29-205ENST00000548539 PPRC1Q5VV67 1664 aaKnown RBP0.33□□□□□ -2.36
VPS29-205ENST00000548539 EPRSP07814 1512 aaKnown RBP0.33□□□□□ -2.36
VPS29-205ENST00000548539 NEXMIFQ5QGS0 1516 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 LMTK2Q8IWU2 1503 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 ITSN1Q15811 1721 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 KNDC1Q76NI1 1749 aa0.33□□□□□ -2.36
VPS29-205ENST00000548539 KTN1Q86UP2 1357 aaKnown RBP0.32□□□□□ -2.36
VPS29-205ENST00000548539 EIF4G3O43432 1585 aaKnown RBP0.32□□□□□ -2.36
VPS29-205ENST00000548539 SIPA1L3O60292 1781 aaPredicted RBP0.32□□□□□ -2.36
VPS29-205ENST00000548539 PPLO60437 1756 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 RGPD2P0DJD1 1756 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 CEP162Q5TB80 1403 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 C10orf71Q711Q0 1435 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 SHROOM2Q13796 1616 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 TRAV22A0A0B4J277 110 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 A0A0G2JND7 137 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 TRBV7-7A0A0K0K1E9 115 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 C7orf77A4D0Y5 90 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 FAM24AA6NFZ4 105 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 SYS1-DBNDD2H3BUS1 97 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 GNG11P61952 73 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 CCL8P80075 99 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 COX6A2Q02221 97 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 COMMD6Q7Z4G1 85 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 SERP2Q8N6R1 65 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 FDCSPQ8NFU4 85 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 TRGV9Q99603 122 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 ST20Q9HBF5 79 aa0.32□□□□□ -2.36
VPS29-205ENST00000548539 SMCO4Q9NRQ5 59 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms