RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 TRBV30A0A0K0K1B3 111 aa9.55□□□□□ -0.88
MSH6-210ENST00000540021 COL12A1Q99715 3063 aa9.55□□□□□ -0.88
MSH6-210ENST00000540021 TINCRA0A1B0GVN0 87 aa9.54□□□□□ -0.88
MSH6-210ENST00000540021 TMEM61Q8N0U2 210 aa9.54□□□□□ -0.88
MSH6-210ENST00000540021 C10orf105Q8TEF2 133 aa9.54□□□□□ -0.88
MSH6-210ENST00000540021 C9orf85Q96MD7 179 aa9.54□□□□□ -0.88
MSH6-210ENST00000540021 NXPH4O95158 308 aa9.54□□□□□ -0.88
MSH6-210ENST00000540021 HERVK_113P63121 156 aa9.54□□□□□ -0.88
MSH6-210ENST00000540021 NBL1P41271 181 aa9.54□□□□□ -0.88
MSH6-210ENST00000540021 Q9UF83 564 aa9.54□□□□□ -0.88
MSH6-210ENST00000540021 NDUFA7O95182 113 aa9.53□□□□□ -0.88
MSH6-210ENST00000540021 RPL32P62910 135 aaKnown RBP9.53□□□□□ -0.88
MSH6-210ENST00000540021 PIK3CD-AS1Q5SR53 167 aa9.53□□□□□ -0.88
MSH6-210ENST00000540021 BSNQ9UPA5 3926 aa9.53□□□□□ -0.88
MSH6-210ENST00000540021 EPG5Q9HCE0 2579 aa9.52□□□□□ -0.89
MSH6-210ENST00000540021 IGKV3D-7A0A0C4DH55 119 aa9.52□□□□□ -0.89
MSH6-210ENST00000540021 AVPP01185 164 aa9.52□□□□□ -0.89
MSH6-210ENST00000540021 C6orf226Q5I0X4 101 aa9.52□□□□□ -0.89
MSH6-210ENST00000540021 NOP10Q9NPE3 64 aaKnown RBP9.51□□□□□ -0.89
MSH6-210ENST00000540021 DAZ2Q13117 558 aaKnown RBP9.51□□□□□ -0.89
MSH6-210ENST00000540021 CLPSL2Q6UWE3 100 aa9.51□□□□□ -0.89
MSH6-210ENST00000540021 DAZ4Q86SG3 579 aaKnown RBP9.51□□□□□ -0.89
MSH6-210ENST00000540021 C5orf38Q86SI9 138 aa9.51□□□□□ -0.89
MSH6-210ENST00000540021 DAZ3Q9NR90 486 aaKnown RBP9.51□□□□□ -0.89
MSH6-210ENST00000540021 ANKRD17O75179 2603 aaKnown RBP9.51□□□□□ -0.89
MSH6-210ENST00000540021 DEFB130BP0DP73 79 aa9.5□□□□□ -0.89
MSH6-210ENST00000540021 DEFB130AP0DP74 79 aa9.5□□□□□ -0.89
MSH6-210ENST00000540021 LINC01356Q8N9X3 169 aa9.5□□□□□ -0.89
MSH6-210ENST00000540021 MRPL23Q16540 153 aaKnown RBP9.5□□□□□ -0.89
MSH6-210ENST00000540021 LINC00308Q8TCZ7 52 aa9.5□□□□□ -0.89
MSH6-210ENST00000540021 RBMY1BA6NDE4 496 aaKnown RBP9.5□□□□□ -0.89
MSH6-210ENST00000540021 RBMY1EA6NEQ0 496 aaKnown RBP9.5□□□□□ -0.89
MSH6-210ENST00000540021 RBMY1DP0C7P1 496 aaKnown RBP9.5□□□□□ -0.89
MSH6-210ENST00000540021 RBMY1A1P0DJD3 496 aaKnown RBP9.5□□□□□ -0.89
MSH6-210ENST00000540021 RBMY1CP0DJD4 496 aa9.5□□□□□ -0.89
MSH6-210ENST00000540021 C18orf65Q6ZTR6 163 aa9.5□□□□□ -0.89
MSH6-210ENST00000540021 LST1O00453 97 aa9.49□□□□□ -0.89
MSH6-210ENST00000540021 ATP5G1P05496 136 aa9.49□□□□□ -0.89
MSH6-210ENST00000540021 INAFM2P0DMQ5 153 aa9.49□□□□□ -0.89
MSH6-210ENST00000540021 TMEM243Q9BU79 118 aa9.49□□□□□ -0.89
MSH6-210ENST00000540021 A0A096LPF7 62 aa9.49□□□□□ -0.89
MSH6-210ENST00000540021 MRPS36P82909 103 aaKnown RBP9.49□□□□□ -0.89
MSH6-210ENST00000540021 Q6ZSN1 163 aa9.49□□□□□ -0.89
MSH6-210ENST00000540021 SND1-IT1Q9HBX3 110 aa9.49□□□□□ -0.89
MSH6-210ENST00000540021 IGLV1-40P01703 118 aa9.48□□□□□ -0.89
MSH6-210ENST00000540021 SVEP1Q4LDE5 3571 aa9.48□□□□□ -0.89
MSH6-210ENST00000540021 MIR7-3HGQ8N6C7 128 aa9.48□□□□□ -0.89
MSH6-210ENST00000540021 UBE2D4Q9Y2X8 147 aa9.48□□□□□ -0.89
MSH6-210ENST00000540021 VPREB3Q9UKI3 123 aa9.48□□□□□ -0.89
MSH6-210ENST00000540021 PSMB8P28062 276 aa9.47□□□□□ -0.89
MSH6-210ENST00000540021 ACANP16112 2415 aa9.47□□□□□ -0.89
MSH6-210ENST00000540021 COX7A2LO14548 114 aa9.47□□□□□ -0.89
MSH6-210ENST00000540021 ODF3Q96PU9 254 aa9.47□□□□□ -0.89
MSH6-210ENST00000540021 C14orf132Q9NPU4 83 aa9.46□□□□□ -0.89
MSH6-210ENST00000540021 PYGO1Q9Y3Y4 419 aa9.46□□□□□ -0.89
MSH6-210ENST00000540021 Q6ZTI0 123 aa9.46□□□□□ -0.9
MSH6-210ENST00000540021 AMELXQ99217 191 aa9.46□□□□□ -0.9
MSH6-210ENST00000540021 COX6A2Q02221 97 aa9.45□□□□□ -0.9
MSH6-210ENST00000540021 FAM19A4Q96LR4 140 aa9.45□□□□□ -0.9
MSH6-210ENST00000540021 SPANXDQ9BXN6 97 aa9.45□□□□□ -0.9
MSH6-210ENST00000540021 SPANXCQ9NY87 97 aa9.45□□□□□ -0.9
MSH6-210ENST00000540021 DCHS2Q6V1P9 2916 aa9.45□□□□□ -0.9
MSH6-210ENST00000540021 TRAV13-2A0A0B4J235 113 aa9.45□□□□□ -0.9
MSH6-210ENST00000540021 LECT2O14960 151 aa9.45□□□□□ -0.9
MSH6-210ENST00000540021 TMEM86BQ8N661 226 aa9.45□□□□□ -0.9
MSH6-210ENST00000540021 XCL1P47992 114 aa9.44□□□□□ -0.9
MSH6-210ENST00000540021 SDIM1Q6ZPB5 146 aa9.44□□□□□ -0.9
MSH6-210ENST00000540021 MAP6D1Q9H9H5 199 aa9.44□□□□□ -0.9
MSH6-210ENST00000540021 CITED1Q99966 193 aa9.44□□□□□ -0.9
MSH6-210ENST00000540021 RBMY1FQ15415 496 aaKnown RBP9.44□□□□□ -0.9
MSH6-210ENST00000540021 NDUFA1O15239 70 aa9.43□□□□□ -0.9
MSH6-210ENST00000540021 SLPIP03973 132 aa9.43□□□□□ -0.9
MSH6-210ENST00000540021 ACYP1P07311 99 aa9.43□□□□□ -0.9
MSH6-210ENST00000540021 HTN3P15516 51 aa9.43□□□□□ -0.9
MSH6-210ENST00000540021 SBSPONQ8IVN8 264 aa9.43□□□□□ -0.9
MSH6-210ENST00000540021 DNAJC30Q96LL9 226 aa9.43□□□□□ -0.9
MSH6-210ENST00000540021 K7EQD1 137 aa9.43□□□□□ -0.9
MSH6-210ENST00000540021 CHCHD7Q9BUK0 85 aa9.43□□□□□ -0.9
MSH6-210ENST00000540021 EIF4EBP3O60516 100 aaPredicted RBP9.42□□□□□ -0.9
MSH6-210ENST00000540021 LINC00694P0DN24 101 aa9.42□□□□□ -0.9
MSH6-210ENST00000540021 CFAP161Q6P656 301 aa9.42□□□□□ -0.9
MSH6-210ENST00000540021 A0A1B0GX51 115 aa9.42□□□□□ -0.9
MSH6-210ENST00000540021 LINC00643Q86TS7 51 aa9.42□□□□□ -0.9
MSH6-210ENST00000540021 ZNF462Q96JM2 2506 aa9.42□□□□□ -0.9
MSH6-210ENST00000540021 MALP21145 153 aa9.41□□□□□ -0.9
MSH6-210ENST00000540021 COX7B2Q8TF08 81 aa9.41□□□□□ -0.9
MSH6-210ENST00000540021 LINC00242Q5T6M2 205 aa9.41□□□□□ -0.9
MSH6-210ENST00000540021 DOPEY1Q5JWR5 2465 aa9.4□□□□□ -0.9
MSH6-210ENST00000540021 S100A7L2Q5SY68 101 aa9.4□□□□□ -0.9
MSH6-210ENST00000540021 Q8N2B8 174 aa9.4□□□□□ -0.91
MSH6-210ENST00000540021 TIRAPP58753 221 aa9.39□□□□□ -0.91
MSH6-210ENST00000540021 DSCR9P59020 149 aa9.39□□□□□ -0.91
MSH6-210ENST00000540021 LAMTOR3Q9UHA4 124 aa9.39□□□□□ -0.91
MSH6-210ENST00000540021 HIST2H2BCQ6DN03 193 aa9.39□□□□□ -0.91
MSH6-210ENST00000540021 LOC100131303A0A0U1RQF7 123 aa9.39□□□□□ -0.91
MSH6-210ENST00000540021 NHLRC4P0CG21 123 aaPredicted RBP9.39□□□□□ -0.91
MSH6-210ENST00000540021 IGLV10-54A0A075B6I4 117 aa9.38□□□□□ -0.91
MSH6-210ENST00000540021 NCR3O14931 201 aa9.37□□□□□ -0.91
MSH6-210ENST00000540021 KLK5Q9Y337 293 aaPredicted RBP9.37□□□□□ -0.91
MSH6-210ENST00000540021 OVOL2Q9BRP0 275 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms