RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 FAM236AA0A1B0GUQ0 79 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 FAM236BA0A1B0GV22 79 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 MRPL23Q16540 153 aaKnown RBP8.14□□□□□ -1.11
SYNE1-237ENST00000539504 ACACBO00763 2458 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 POLQO75417 2590 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 TIRAPP58753 221 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 HIST2H2BDQ6DRA6 164 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 LINC01600Q96MT4 127 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 WNK1Q9H4A3 2382 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 FAM240AA0A1B0GVK7 77 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 COX7A2LO14548 114 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 EDA2RQ9HAV5 297 aa8.14□□□□□ -1.11
SYNE1-237ENST00000539504 IGKV3OR2-268A0A0C4DH90 116 aa8.13□□□□□ -1.11
SYNE1-237ENST00000539504 BAALC-AS2P0C853 105 aa8.13□□□□□ -1.11
SYNE1-237ENST00000539504 DNAJC30Q96LL9 226 aa8.13□□□□□ -1.11
SYNE1-237ENST00000539504 INSP01308 110 aa8.13□□□□□ -1.11
SYNE1-237ENST00000539504 Q8N2B8 174 aa8.13□□□□□ -1.11
SYNE1-237ENST00000539504 COPS9Q8WXC6 57 aa8.13□□□□□ -1.11
SYNE1-237ENST00000539504 TMEM89A2RUT3 159 aa8.13□□□□□ -1.11
SYNE1-237ENST00000539504 LINC00242Q5T6M2 205 aa8.13□□□□□ -1.11
SYNE1-237ENST00000539504 DAZ2Q13117 558 aaKnown RBP8.12□□□□□ -1.11
SYNE1-237ENST00000539504 DAZ4Q86SG3 579 aaKnown RBP8.12□□□□□ -1.11
SYNE1-237ENST00000539504 DAZ3Q9NR90 486 aaKnown RBP8.12□□□□□ -1.11
SYNE1-237ENST00000539504 FAM208BQ5VWN6 2430 aa8.12□□□□□ -1.11
SYNE1-237ENST00000539504 LINC00694P0DN24 101 aa8.12□□□□□ -1.11
SYNE1-237ENST00000539504 TOMM7Q9P0U1 55 aa8.12□□□□□ -1.11
SYNE1-237ENST00000539504 HERV-K104P63124 156 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 RPL36AP83881 106 aaKnown RBP8.11□□□□□ -1.11
SYNE1-237ENST00000539504 PIK3CD-AS1Q5SR53 167 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 SOSTDC1Q6X4U4 206 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 RPL36ALQ969Q0 106 aaKnown RBP8.11□□□□□ -1.11
SYNE1-237ENST00000539504 VPREB3Q9UKI3 123 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 CACNA1AO00555 2505 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 VPS13CQ709C8 3753 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 GAGE2AQ6NT46 116 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 LINC01356Q8N9X3 169 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 MAP6D1Q9H9H5 199 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 PEMTQ9UBM1 199 aa8.11□□□□□ -1.11
SYNE1-237ENST00000539504 ACYP1P07311 99 aa8.1□□□□□ -1.11
SYNE1-237ENST00000539504 Q9HAA7 133 aa8.1□□□□□ -1.11
SYNE1-237ENST00000539504 SMIM1B2RUZ4 78 aa8.1□□□□□ -1.11
SYNE1-237ENST00000539504 UBE2L6O14933 153 aa8.1□□□□□ -1.11
SYNE1-237ENST00000539504 DEFB121Q5J5C9 76 aa8.1□□□□□ -1.11
SYNE1-237ENST00000539504 C11orf72Q8NBR9 251 aa8.1□□□□□ -1.11
SYNE1-237ENST00000539504 RS1O15537 224 aa8.09□□□□□ -1.11
SYNE1-237ENST00000539504 TLN2Q9Y4G6 2542 aa8.09□□□□□ -1.11
SYNE1-237ENST00000539504 IGLV5-45A0A087WSX0 123 aa8.09□□□□□ -1.11
SYNE1-237ENST00000539504 RNF152Q8N8N0 203 aa8.09□□□□□ -1.11
SYNE1-237ENST00000539504 ZNF702PQ9H963 129 aa8.09□□□□□ -1.11
SYNE1-237ENST00000539504 CRYBG3Q68DQ2 2970 aa8.09□□□□□ -1.11
SYNE1-237ENST00000539504 IGLV5-39A0A0G2JS06 123 aa8.09□□□□□ -1.12
SYNE1-237ENST00000539504 TRBV7-7A0A0K0K1E9 115 aa8.09□□□□□ -1.12
SYNE1-237ENST00000539504 STHQ8IWL8 128 aa8.09□□□□□ -1.12
SYNE1-237ENST00000539504 CRPP02741 224 aa8.08□□□□□ -1.12
SYNE1-237ENST00000539504 PTPN13Q12923 2485 aa8.08□□□□□ -1.12
SYNE1-237ENST00000539504 DNAL4O96015 105 aa8.08□□□□□ -1.12
SYNE1-237ENST00000539504 C9orf153Q5TBE3 101 aa8.08□□□□□ -1.12
SYNE1-237ENST00000539504 LINC00643Q86TS7 51 aa8.08□□□□□ -1.12
SYNE1-237ENST00000539504 C11orf44Q8N8P7 122 aa8.08□□□□□ -1.12
SYNE1-237ENST00000539504 SETD2Q9BYW2 2564 aaPredicted RBP8.07□□□□□ -1.12
SYNE1-237ENST00000539504 BEAN1Q3B7T3 259 aa8.07□□□□□ -1.12
SYNE1-237ENST00000539504 SMCR5Q8TEV8 140 aa8.07□□□□□ -1.12
SYNE1-237ENST00000539504 TRACP01848 142 aa8.07□□□□□ -1.12
SYNE1-237ENST00000539504 LINC00158P58513 81 aa8.07□□□□□ -1.12
SYNE1-237ENST00000539504 SHISA2Q6UWI4 295 aa8.07□□□□□ -1.12
SYNE1-237ENST00000539504 Q6ZTI0 123 aa8.07□□□□□ -1.12
SYNE1-237ENST00000539504 FAM218AQ96MZ4 157 aa8.07□□□□□ -1.12
SYNE1-237ENST00000539504 MYO18BQ8IUG5 2567 aa8.06□□□□□ -1.12
SYNE1-237ENST00000539504 K7EQD1 137 aa8.06□□□□□ -1.12
SYNE1-237ENST00000539504 CENPEQ02224 2701 aa8.06□□□□□ -1.12
SYNE1-237ENST00000539504 MIR7-3HGQ8N6C7 128 aa8.06□□□□□ -1.12
SYNE1-237ENST00000539504 A0A1W2PRX2 142 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 INAFM2P0DMQ5 153 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 SONP18583 2426 aaKnown RBP8.05□□□□□ -1.12
SYNE1-237ENST00000539504 HIST2H2BCQ6DN03 193 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 NTM-AS1Q6ZSK4 140 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 DOPEY1Q5JWR5 2465 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 ZANQ9Y493 2812 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 TRAV13-2A0A0B4J235 113 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 DSCR9P59020 149 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 OR13C6PQ8NH95 151 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 IMUPQ9GZP8 106 aa8.05□□□□□ -1.12
SYNE1-237ENST00000539504 CELSR2Q9HCU4 2923 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 TRGV2A0A075B6R0 118 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 DEFB114Q30KQ6 69 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 TMEM243Q9BU79 118 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 SND1-IT1Q9HBX3 110 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 NOP10Q9NPE3 64 aaKnown RBP8.04□□□□□ -1.12
SYNE1-237ENST00000539504 CDC42SE2Q9NRR3 84 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 FAM110AQ9BQ89 295 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 PRORYQ9H606 182 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 JMJD1CQ15652 2540 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 MALP21145 153 aa8.04□□□□□ -1.12
SYNE1-237ENST00000539504 A8MTW9 85 aa8.03□□□□□ -1.12
SYNE1-237ENST00000539504 PFN2P35080 140 aa8.03□□□□□ -1.12
SYNE1-237ENST00000539504 Q6YL49 198 aa8.03□□□□□ -1.12
SYNE1-237ENST00000539504 NAV2Q8IVL1 2488 aa8.03□□□□□ -1.12
SYNE1-237ENST00000539504 PKD1L2Q7Z442 2459 aa8.03□□□□□ -1.12
SYNE1-237ENST00000539504 Q96MF0 132 aa8.03□□□□□ -1.12
SYNE1-237ENST00000539504 TMEM126AQ9H061 195 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms