RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 KIR2DL4Q99706 377 aa12.27□□□□□ -0.45
CLIP1-211ENST00000539080 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-211ENST00000539080 F8W036 122 aa12.26□□□□□ -0.45
CLIP1-211ENST00000539080 FCER1GP30273 86 aa12.26□□□□□ -0.45
CLIP1-211ENST00000539080 SMAGPQ0VAQ4 97 aa12.26□□□□□ -0.45
CLIP1-211ENST00000539080 C20orf78Q9BR46 151 aa12.26□□□□□ -0.45
CLIP1-211ENST00000539080 TRBV24-1A0A075B6N3 115 aa12.25□□□□□ -0.45
CLIP1-211ENST00000539080 PNRC1Q12796 327 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-211ENST00000539080 A0A1B0GXF2 115 aa12.24□□□□□ -0.45
CLIP1-211ENST00000539080 CKS2P33552 79 aa12.24□□□□□ -0.45
CLIP1-211ENST00000539080 RPL32P62910 135 aaKnown RBP12.24□□□□□ -0.45
CLIP1-211ENST00000539080 C15orf56Q8N910 161 aa12.24□□□□□ -0.45
CLIP1-211ENST00000539080 CDC42SE2Q9NRR3 84 aa12.24□□□□□ -0.45
CLIP1-211ENST00000539080 CSDC2Q9Y534 153 aaKnown RBP12.24□□□□□ -0.45
CLIP1-211ENST00000539080 TCAPO15273 167 aa12.23□□□□□ -0.45
CLIP1-211ENST00000539080 MRPL54Q6P161 138 aaKnown RBP12.23□□□□□ -0.45
CLIP1-211ENST00000539080 SDIM1Q6ZPB5 146 aa12.23□□□□□ -0.45
CLIP1-211ENST00000539080 ATP5L2Q7Z4Y8 100 aa12.23□□□□□ -0.45
CLIP1-211ENST00000539080 SRRM2Q9UQ35 2752 aaKnown RBP12.22□□□□□ -0.45
CLIP1-211ENST00000539080 IGHV3-64A0A075B6Q5 118 aa12.22□□□□□ -0.45
CLIP1-211ENST00000539080 LINC00959A0A1B0GUT2 108 aa12.22□□□□□ -0.45
CLIP1-211ENST00000539080 FOXI1Q12951 378 aa12.22□□□□□ -0.45
CLIP1-211ENST00000539080 ZNF664Q8N3J9 261 aa12.22□□□□□ -0.45
CLIP1-211ENST00000539080 PHOX2AO14813 284 aa12.21□□□□□ -0.45
CLIP1-211ENST00000539080 PPBPP02775 128 aa12.21□□□□□ -0.45
CLIP1-211ENST00000539080 SS18Q15532 418 aa12.21□□□□□ -0.45
CLIP1-211ENST00000539080 CLLU1Q5K131 121 aa12.21□□□□□ -0.45
CLIP1-211ENST00000539080 TMEM18Q96B42 140 aa12.21□□□□□ -0.45
CLIP1-211ENST00000539080 ANAPC16Q96DE5 110 aa12.21□□□□□ -0.45
CLIP1-211ENST00000539080 GVQW2A0A096LPI5 108 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-211ENST00000539080 TNFRSF6BO95407 300 aa12.2□□□□□ -0.46
CLIP1-211ENST00000539080 SLPIP03973 132 aa12.2□□□□□ -0.46
CLIP1-211ENST00000539080 UBE2D4Q9Y2X8 147 aa12.2□□□□□ -0.46
CLIP1-211ENST00000539080 D6R8Y8 96 aa12.19□□□□□ -0.46
CLIP1-211ENST00000539080 CCL25O15444 150 aa12.19□□□□□ -0.46
CLIP1-211ENST00000539080 XCL1P47992 114 aa12.19□□□□□ -0.46
CLIP1-211ENST00000539080 CIRBPQ14011 172 aaKnown RBP12.19□□□□□ -0.46
CLIP1-211ENST00000539080 TIMM21Q9BVV7 248 aa12.19□□□□□ -0.46
CLIP1-211ENST00000539080 MT-ND4LP03901 98 aa12.18□□□□□ -0.46
CLIP1-211ENST00000539080 CD164L2Q6UWJ8 174 aa12.18□□□□□ -0.46
CLIP1-211ENST00000539080 SMIM2Q9BVW6 85 aa12.18□□□□□ -0.46
CLIP1-211ENST00000539080 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-211ENST00000539080 IGHV1-58A0A0C4DH39 117 aa12.16□□□□□ -0.46
CLIP1-211ENST00000539080 C1orf196B1AJZ1 125 aa12.16□□□□□ -0.46
CLIP1-211ENST00000539080 HIGD2BQ4VC39 106 aa12.16□□□□□ -0.46
CLIP1-211ENST00000539080 ORMDL3Q8N138 153 aa12.16□□□□□ -0.46
CLIP1-211ENST00000539080 PANO1I0J062 215 aa12.15□□□□□ -0.46
CLIP1-211ENST00000539080 NPYP01303 97 aa12.15□□□□□ -0.46
CLIP1-211ENST00000539080 KRTAP10-4P60372 401 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-211ENST00000539080 UQCC3Q6UW78 93 aa12.14□□□□□ -0.47
CLIP1-211ENST00000539080 TMEM136Q6ZRR5 245 aa12.13□□□□□ -0.47
CLIP1-211ENST00000539080 LAMTOR2Q9Y2Q5 125 aa12.13□□□□□ -0.47
CLIP1-211ENST00000539080 SPACA4Q8TDM5 124 aa12.12□□□□□ -0.47
CLIP1-211ENST00000539080 PRELID3AQ96N28 172 aa12.12□□□□□ -0.47
CLIP1-211ENST00000539080 SPANXA1Q9NS26 97 aa12.12□□□□□ -0.47
CLIP1-211ENST00000539080 PKIGQ9Y2B9 76 aa12.12□□□□□ -0.47
CLIP1-211ENST00000539080 Q6ZUT4 128 aa12.11□□□□□ -0.47
CLIP1-211ENST00000539080 MYCBP2O75592 4640 aa12.1□□□□□ -0.47
CLIP1-211ENST00000539080 PRSS47A8MTI9 375 aa12.1□□□□□ -0.47
CLIP1-211ENST00000539080 RPL37AP61513 92 aaKnown RBP12.1□□□□□ -0.47
CLIP1-211ENST00000539080 RPL39P62891 51 aaKnown RBP12.1□□□□□ -0.47
CLIP1-211ENST00000539080 IFITM2Q01629 132 aa12.1□□□□□ -0.47
CLIP1-211ENST00000539080 COX6A2Q02221 97 aa12.1□□□□□ -0.47
CLIP1-211ENST00000539080 DPH3Q96FX2 82 aa12.1□□□□□ -0.47
CLIP1-211ENST00000539080 IMMP2LQ96T52 175 aa12.1□□□□□ -0.47
CLIP1-211ENST00000539080 TRAV13-1A0A0B4J241 112 aa12.09□□□□□ -0.47
CLIP1-211ENST00000539080 ZNF561-AS1K7EIQ3 104 aa12.09□□□□□ -0.47
CLIP1-211ENST00000539080 COX7A2LO14548 114 aa12.09□□□□□ -0.47
CLIP1-211ENST00000539080 RAB5AP20339 215 aa12.09□□□□□ -0.47
CLIP1-211ENST00000539080 MALP21145 153 aa12.09□□□□□ -0.47
CLIP1-211ENST00000539080 MRPS36P82909 103 aaKnown RBP12.09□□□□□ -0.47
CLIP1-211ENST00000539080 RNASE13Q5GAN3 156 aaKnown RBP12.09□□□□□ -0.47
CLIP1-211ENST00000539080 A0A087WYN8 130 aa12.08□□□□□ -0.48
CLIP1-211ENST00000539080 CHTF8P0CG12 524 aa12.08□□□□□ -0.48
CLIP1-211ENST00000539080 FLG2Q5D862 2391 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-211ENST00000539080 TMEM218A2RU14 115 aa12.07□□□□□ -0.48
CLIP1-211ENST00000539080 PRSS3P2Q8NHM4 247 aa12.07□□□□□ -0.48
CLIP1-211ENST00000539080 CARD19Q96LW7 228 aa12.07□□□□□ -0.48
CLIP1-211ENST00000539080 MAP1LC3AQ9H492 121 aa12.07□□□□□ -0.48
CLIP1-211ENST00000539080 PLAC8Q9NZF1 115 aa12.07□□□□□ -0.48
CLIP1-211ENST00000539080 KRTAP29-1A8MX34 341 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-211ENST00000539080 ADCYAP1P18509 176 aa12.06□□□□□ -0.48
CLIP1-211ENST00000539080 FAM104AQ969W3 186 aa12.06□□□□□ -0.48
CLIP1-211ENST00000539080 CTDSP1Q9GZU7 261 aa12.06□□□□□ -0.48
CLIP1-211ENST00000539080 APOMO95445 188 aa12.05□□□□□ -0.48
CLIP1-211ENST00000539080 IFI27P40305 119 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-211ENST00000539080 SYCNQ0VAF6 134 aa12.05□□□□□ -0.48
CLIP1-211ENST00000539080 LINC00474Q9P2X8 69 aa12.05□□□□□ -0.48
CLIP1-211ENST00000539080 PYGO1Q9Y3Y4 419 aa12.05□□□□□ -0.48
CLIP1-211ENST00000539080 DMBT1Q9UGM3 2413 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-211ENST00000539080 J3QL48 77 aa12.04□□□□□ -0.48
CLIP1-211ENST00000539080 LINC00526Q96FQ7 95 aa12.04□□□□□ -0.48
CLIP1-211ENST00000539080 SEC11CQ9BY50 192 aa12.04□□□□□ -0.48
CLIP1-211ENST00000539080 TRAV9-1A0A075B6T8 112 aa12.03□□□□□ -0.48
CLIP1-211ENST00000539080 K7EMI3 77 aa12.03□□□□□ -0.48
CLIP1-211ENST00000539080 MAJINQ3KP22 176 aa12.03□□□□□ -0.48
CLIP1-211ENST00000539080 IGLV4-69A0A075B6H9 119 aa12.02□□□□□ -0.49
CLIP1-211ENST00000539080 A0A096LNI7 61 aa12.02□□□□□ -0.49
CLIP1-211ENST00000539080 IGKV2-24A0A0C4DH68 120 aa12.02□□□□□ -0.49
CLIP1-211ENST00000539080 LOC389332A0A1B0GUA5 103 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms