RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 OR5A1Q8NGJ0 315 aa13.36□□□□□ -0.27
CCS-208ENST00000533244 TMEM101Q96IK0 257 aa13.36□□□□□ -0.27
CCS-208ENST00000533244 PRELID3AQ96N28 172 aa13.35□□□□□ -0.27
CCS-208ENST00000533244 CDC42SE2Q9NRR3 84 aa13.35□□□□□ -0.27
CCS-208ENST00000533244 CSDC2Q9Y534 153 aaKnown RBP13.35□□□□□ -0.27
CCS-208ENST00000533244 PRSS47A8MTI9 375 aa13.34□□□□□ -0.27
CCS-208ENST00000533244 LAMTOR2Q9Y2Q5 125 aa13.34□□□□□ -0.27
CCS-208ENST00000533244 UBE2D4Q9Y2X8 147 aa13.34□□□□□ -0.27
CCS-208ENST00000533244 PRSS1P07477 247 aa13.33□□□□□ -0.28
CCS-208ENST00000533244 IGKV3OR2-268A0A0C4DH90 116 aa13.32□□□□□ -0.28
CCS-208ENST00000533244 TIMM21Q9BVV7 248 aa13.32□□□□□ -0.28
CCS-208ENST00000533244 RHEBQ15382 184 aa13.31□□□□□ -0.28
CCS-208ENST00000533244 Q6ZSA8 131 aa13.31□□□□□ -0.28
CCS-208ENST00000533244 ZNF664Q8N3J9 261 aa13.31□□□□□ -0.28
CCS-208ENST00000533244 CLRN3Q8NCR9 226 aa13.31□□□□□ -0.28
CCS-208ENST00000533244 CHCHD10Q8WYQ3 142 aaPredicted RBP13.31□□□□□ -0.28
CCS-208ENST00000533244 GAGE12HA6NDE8 117 aa13.3□□□□□ -0.28
CCS-208ENST00000533244 SMAGPQ0VAQ4 97 aa13.3□□□□□ -0.28
CCS-208ENST00000533244 TMEM18Q96B42 140 aa13.3□□□□□ -0.28
CCS-208ENST00000533244 FAM30AQ9NZY2 134 aa13.3□□□□□ -0.28
CCS-208ENST00000533244 LINC00959A0A1B0GUT2 108 aa13.3□□□□□ -0.28
CCS-208ENST00000533244 Q8N1X5 172 aa13.3□□□□□ -0.28
CCS-208ENST00000533244 PCLOQ9Y6V0 5065 aa13.29□□□□□ -0.28
CCS-208ENST00000533244 LINC01620Q4KN68 170 aa13.29□□□□□ -0.28
CCS-208ENST00000533244 DGAT2L7PQ6IED9 249 aa13.29□□□□□ -0.28
CCS-208ENST00000533244 KRTAP4-5Q9BYR2 181 aa13.29□□□□□ -0.28
CCS-208ENST00000533244 S100PP25815 95 aa13.28□□□□□ -0.28
CCS-208ENST00000533244 FOXI1Q12951 378 aa13.28□□□□□ -0.28
CCS-208ENST00000533244 MAP1LC3AQ9H492 121 aa13.28□□□□□ -0.28
CCS-208ENST00000533244 ABCA13Q86UQ4 5058 aa13.27□□□□□ -0.28
CCS-208ENST00000533244 RPL39P62891 51 aaKnown RBP13.27□□□□□ -0.29
CCS-208ENST00000533244 C15orf56Q8N910 161 aa13.27□□□□□ -0.29
CCS-208ENST00000533244 Q6ZUT4 128 aa13.26□□□□□ -0.29
CCS-208ENST00000533244 FAM104AQ969W3 186 aa13.26□□□□□ -0.29
CCS-208ENST00000533244 RPS10P5Q9NQ39 176 aa13.26□□□□□ -0.29
CCS-208ENST00000533244 CCL25O15444 150 aa13.25□□□□□ -0.29
CCS-208ENST00000533244 CNBPP62633 177 aaKnown RBP13.25□□□□□ -0.29
CCS-208ENST00000533244 Q8N8P6 123 aa13.25□□□□□ -0.29
CCS-208ENST00000533244 SPANXA1Q9NS26 97 aa13.25□□□□□ -0.29
CCS-208ENST00000533244 FAT1Q14517 4588 aa13.25□□□□□ -0.29
CCS-208ENST00000533244 RAB5AP20339 215 aa13.24□□□□□ -0.29
CCS-208ENST00000533244 XCL1P47992 114 aa13.24□□□□□ -0.29
CCS-208ENST00000533244 SS18Q15532 418 aa13.24□□□□□ -0.29
CCS-208ENST00000533244 C9orf163Q8N9P6 203 aa13.24□□□□□ -0.29
CCS-208ENST00000533244 GNB1LQ9BYB4 327 aa13.24□□□□□ -0.29
CCS-208ENST00000533244 LOC389332A0A1B0GUA5 103 aa13.23□□□□□ -0.29
CCS-208ENST00000533244 hDV102S1A0JD36 115 aa13.23□□□□□ -0.29
CCS-208ENST00000533244 HAMPP81172 84 aa13.23□□□□□ -0.29
CCS-208ENST00000533244 CFAP161Q6P656 301 aa13.23□□□□□ -0.29
CCS-208ENST00000533244 APOC3P02656 99 aa13.22□□□□□ -0.29
CCS-208ENST00000533244 MRPS36P82909 103 aaKnown RBP13.22□□□□□ -0.29
CCS-208ENST00000533244 COX19Q49B96 90 aa13.22□□□□□ -0.29
CCS-208ENST00000533244 RNASE13Q5GAN3 156 aaKnown RBP13.22□□□□□ -0.29
CCS-208ENST00000533244 CD164L2Q6UWJ8 174 aa13.22□□□□□ -0.29
CCS-208ENST00000533244 SLPIP03973 132 aa13.22□□□□□ -0.29
CCS-208ENST00000533244 GVQW2A0A096LPI5 108 aaPredicted RBP13.21□□□□□ -0.3
CCS-208ENST00000533244 C1orf196B1AJZ1 125 aa13.21□□□□□ -0.3
CCS-208ENST00000533244 K7EMI3 77 aa13.21□□□□□ -0.3
CCS-208ENST00000533244 NDUFA5Q16718 116 aa13.21□□□□□ -0.3
CCS-208ENST00000533244 KIAA1644Q3SXP7 199 aa13.21□□□□□ -0.3
CCS-208ENST00000533244 SVBPQ8N300 66 aa13.21□□□□□ -0.3
CCS-208ENST00000533244 PYGO1Q9Y3Y4 419 aa13.21□□□□□ -0.3
CCS-208ENST00000533244 SNAPINO95295 136 aa13.2□□□□□ -0.3
CCS-208ENST00000533244 NXT2Q9NPJ8 142 aaKnown RBP13.2□□□□□ -0.3
CCS-208ENST00000533244 MT-ND6P03923 174 aa13.19□□□□□ -0.3
CCS-208ENST00000533244 OPRPNQ99935 248 aaPredicted RBP13.19□□□□□ -0.3
CCS-208ENST00000533244 AP5S1Q9NUS5 200 aa13.19□□□□□ -0.3
CCS-208ENST00000533244 TRAV13-1A0A0B4J241 112 aa13.18□□□□□ -0.3
CCS-208ENST00000533244 ORMDL2Q53FV1 153 aa13.18□□□□□ -0.3
CCS-208ENST00000533244 IFI27P40305 119 aaPredicted RBP13.17□□□□□ -0.3
CCS-208ENST00000533244 HIGD2BQ4VC39 106 aa13.17□□□□□ -0.3
CCS-208ENST00000533244 ALKBH7Q9BT30 221 aaPredicted RBP13.17□□□□□ -0.3
CCS-208ENST00000533244 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.16□□□□□ -0.3
CCS-208ENST00000533244 IGHV1-58A0A0C4DH39 117 aa13.16□□□□□ -0.3
CCS-208ENST00000533244 SDIM1Q6ZPB5 146 aa13.16□□□□□ -0.3
CCS-208ENST00000533244 SCXQ7RTU7 201 aa13.16□□□□□ -0.3
CCS-208ENST00000533244 CHAC1Q9BUX1 264 aa13.16□□□□□ -0.3
CCS-208ENST00000533244 VPS13BQ7Z7G8 4022 aa13.16□□□□□ -0.3
CCS-208ENST00000533244 IGLV4-3A0A075B6K6 122 aa13.15□□□□□ -0.3
CCS-208ENST00000533244 EPM2AB3EWF7 344 aa13.15□□□□□ -0.3
CCS-208ENST00000533244 SMR3BP02814 79 aaPredicted RBP13.15□□□□□ -0.3
CCS-208ENST00000533244 C2orf66Q6UXQ4 117 aa13.15□□□□□ -0.3
CCS-208ENST00000533244 MRPL18Q9H0U6 180 aaKnown RBP13.15□□□□□ -0.3
CCS-208ENST00000533244 CYSLTR1Q9Y271 337 aa13.15□□□□□ -0.3
CCS-208ENST00000533244 TGIF2-C20orf24A0A0A6YYL0 155 aa13.14□□□□□ -0.31
CCS-208ENST00000533244 COX7A2LO14548 114 aa13.13□□□□□ -0.31
CCS-208ENST00000533244 Q5VSD8 79 aa13.13□□□□□ -0.31
CCS-208ENST00000533244 IFITM10A6NMD0 228 aa13.13□□□□□ -0.31
CCS-208ENST00000533244 CIRBP-AS1Q8TBR5 109 aa13.13□□□□□ -0.31
CCS-208ENST00000533244 IGHV3-64A0A075B6Q5 118 aa13.12□□□□□ -0.31
CCS-208ENST00000533244 LINC01546A6NGU7 62 aa13.12□□□□□ -0.31
CCS-208ENST00000533244 NPSP0C0P6 89 aa13.12□□□□□ -0.31
CCS-208ENST00000533244 FABP9Q0Z7S8 132 aa13.12□□□□□ -0.31
CCS-208ENST00000533244 TMEM141Q96I45 108 aa13.12□□□□□ -0.31
CCS-208ENST00000533244 IGHV3OR16-9A0A0B4J2B5 98 aa13.11□□□□□ -0.31
CCS-208ENST00000533244 IGIPA6NJ69 53 aa13.11□□□□□ -0.31
CCS-208ENST00000533244 CIRBPQ14011 172 aaKnown RBP13.11□□□□□ -0.31
CCS-208ENST00000533244 YPEL4Q96NS1 127 aa13.11□□□□□ -0.31
CCS-208ENST00000533244 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.11□□□□□ -0.31
CCS-208ENST00000533244 PANO1I0J062 215 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms