RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CDC42SE2Q9NRR3 84 aa13.02□□□□□ -0.33
CPSF1-209ENST00000532725 LAMTOR2Q9Y2Q5 125 aa13.02□□□□□ -0.33
CPSF1-209ENST00000532725 S100PP25815 95 aa13.01□□□□□ -0.33
CPSF1-209ENST00000532725 OR5A1Q8NGJ0 315 aa13.01□□□□□ -0.33
CPSF1-209ENST00000532725 CSDC2Q9Y534 153 aaKnown RBP13.01□□□□□ -0.33
CPSF1-209ENST00000532725 HSPG2P98160 4391 aa13□□□□□ -0.33
CPSF1-209ENST00000532725 IGLV2-33A0A075B6J2 118 aaPredicted RBP13□□□□□ -0.33
CPSF1-209ENST00000532725 IGKV3OR2-268A0A0C4DH90 116 aa13□□□□□ -0.33
CPSF1-209ENST00000532725 USP17L23D6RBM5 183 aa13□□□□□ -0.33
CPSF1-209ENST00000532725 APOC3P02656 99 aa13□□□□□ -0.33
CPSF1-209ENST00000532725 ZNF664Q8N3J9 261 aa13□□□□□ -0.33
CPSF1-209ENST00000532725 UBE2D4Q9Y2X8 147 aa13□□□□□ -0.33
CPSF1-209ENST00000532725 C14orf177Q52M58 125 aa12.99□□□□□ -0.33
CPSF1-209ENST00000532725 TMEM18Q96B42 140 aa12.98□□□□□ -0.33
CPSF1-209ENST00000532725 TIMM21Q9BVV7 248 aa12.98□□□□□ -0.33
CPSF1-209ENST00000532725 LOC389332A0A1B0GUA5 103 aa12.97□□□□□ -0.33
CPSF1-209ENST00000532725 PRSS1P07477 247 aa12.97□□□□□ -0.33
CPSF1-209ENST00000532725 SMAGPQ0VAQ4 97 aa12.97□□□□□ -0.33
CPSF1-209ENST00000532725 DGAT2L7PQ6IED9 249 aa12.97□□□□□ -0.33
CPSF1-209ENST00000532725 CHCHD10Q8WYQ3 142 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-209ENST00000532725 GNB1LQ9BYB4 327 aa12.97□□□□□ -0.33
CPSF1-209ENST00000532725 LINC00959A0A1B0GUT2 108 aa12.96□□□□□ -0.33
CPSF1-209ENST00000532725 GAGE12HA6NDE8 117 aa12.96□□□□□ -0.33
CPSF1-209ENST00000532725 RPL39P62891 51 aaKnown RBP12.96□□□□□ -0.33
CPSF1-209ENST00000532725 KIAA1644Q3SXP7 199 aa12.96□□□□□ -0.33
CPSF1-209ENST00000532725 SVBPQ8N300 66 aa12.96□□□□□ -0.33
CPSF1-209ENST00000532725 MAP1LC3AQ9H492 121 aa12.96□□□□□ -0.33
CPSF1-209ENST00000532725 SNAPINO95295 136 aa12.95□□□□□ -0.34
CPSF1-209ENST00000532725 RAB5AP20339 215 aa12.95□□□□□ -0.34
CPSF1-209ENST00000532725 XGP55808 180 aa12.95□□□□□ -0.34
CPSF1-209ENST00000532725 NDUFA5Q16718 116 aa12.95□□□□□ -0.34
CPSF1-209ENST00000532725 Q8N8P6 123 aa12.95□□□□□ -0.34
CPSF1-209ENST00000532725 FAM104AQ969W3 186 aa12.95□□□□□ -0.34
CPSF1-209ENST00000532725 KRTAP17-1Q9BYP8 105 aa12.95□□□□□ -0.34
CPSF1-209ENST00000532725 COX19Q49B96 90 aa12.94□□□□□ -0.34
CPSF1-209ENST00000532725 DNAH8Q96JB1 4490 aa12.94□□□□□ -0.34
CPSF1-209ENST00000532725 FOXI1Q12951 378 aa12.92□□□□□ -0.34
CPSF1-209ENST00000532725 LINC01620Q4KN68 170 aa12.92□□□□□ -0.34
CPSF1-209ENST00000532725 FAM30AQ9NZY2 134 aa12.92□□□□□ -0.34
CPSF1-209ENST00000532725 CCL25O15444 150 aa12.91□□□□□ -0.34
CPSF1-209ENST00000532725 SS18Q15532 418 aa12.91□□□□□ -0.34
CPSF1-209ENST00000532725 RNASE13Q5GAN3 156 aaKnown RBP12.91□□□□□ -0.34
CPSF1-209ENST00000532725 SLC7A5P1Q8MH63 180 aa12.91□□□□□ -0.34
CPSF1-209ENST00000532725 SPANXA1Q9NS26 97 aa12.91□□□□□ -0.34
CPSF1-209ENST00000532725 TGIF2-C20orf24A0A0A6YYL0 155 aa12.9□□□□□ -0.34
CPSF1-209ENST00000532725 XCL1P47992 114 aa12.9□□□□□ -0.34
CPSF1-209ENST00000532725 Q6ZUT4 128 aa12.9□□□□□ -0.34
CPSF1-209ENST00000532725 OPRPNQ99935 248 aaPredicted RBP12.9□□□□□ -0.34
CPSF1-209ENST00000532725 K7EMI3 77 aa12.89□□□□□ -0.35
CPSF1-209ENST00000532725 MT-ND6P03923 174 aa12.89□□□□□ -0.35
CPSF1-209ENST00000532725 IFI27P40305 119 aaPredicted RBP12.89□□□□□ -0.35
CPSF1-209ENST00000532725 MRPS36P82909 103 aaKnown RBP12.89□□□□□ -0.35
CPSF1-209ENST00000532725 CFAP161Q6P656 301 aa12.89□□□□□ -0.35
CPSF1-209ENST00000532725 CD164L2Q6UWJ8 174 aa12.89□□□□□ -0.35
CPSF1-209ENST00000532725 C15orf56Q8N910 161 aa12.89□□□□□ -0.35
CPSF1-209ENST00000532725 ALKBH7Q9BT30 221 aaPredicted RBP12.89□□□□□ -0.35
CPSF1-209ENST00000532725 NXT2Q9NPJ8 142 aaKnown RBP12.89□□□□□ -0.35
CPSF1-209ENST00000532725 hDV102S1A0JD36 115 aa12.88□□□□□ -0.35
CPSF1-209ENST00000532725 C1orf196B1AJZ1 125 aa12.88□□□□□ -0.35
CPSF1-209ENST00000532725 SLPIP03973 132 aa12.88□□□□□ -0.35
CPSF1-209ENST00000532725 MRPL18Q9H0U6 180 aaKnown RBP12.88□□□□□ -0.35
CPSF1-209ENST00000532725 PYGO1Q9Y3Y4 419 aa12.88□□□□□ -0.35
CPSF1-209ENST00000532725 FABP9Q0Z7S8 132 aa12.87□□□□□ -0.35
CPSF1-209ENST00000532725 ORMDL2Q53FV1 153 aa12.87□□□□□ -0.35
CPSF1-209ENST00000532725 Q6ZSA8 131 aa12.87□□□□□ -0.35
CPSF1-209ENST00000532725 TRAV13-1A0A0B4J241 112 aa12.86□□□□□ -0.35
CPSF1-209ENST00000532725 C9orf163Q8N9P6 203 aa12.86□□□□□ -0.35
CPSF1-209ENST00000532725 CNBPP62633 177 aaKnown RBP12.85□□□□□ -0.35
CPSF1-209ENST00000532725 C2orf66Q6UXQ4 117 aa12.85□□□□□ -0.35
CPSF1-209ENST00000532725 Q8N1X5 172 aa12.85□□□□□ -0.35
CPSF1-209ENST00000532725 YPEL4Q96NS1 127 aa12.85□□□□□ -0.35
CPSF1-209ENST00000532725 KRTAP4-5Q9BYR2 181 aa12.84□□□□□ -0.35
CPSF1-209ENST00000532725 CYSLTR1Q9Y271 337 aa12.84□□□□□ -0.35
CPSF1-209ENST00000532725 IGLV4-3A0A075B6K6 122 aa12.83□□□□□ -0.36
CPSF1-209ENST00000532725 PRSS3P2Q8NHM4 247 aa12.83□□□□□ -0.36
CPSF1-209ENST00000532725 AP5S1Q9NUS5 200 aa12.83□□□□□ -0.36
CPSF1-209ENST00000532725 TRAPPC1Q9Y5R8 145 aa12.83□□□□□ -0.36
CPSF1-209ENST00000532725 GVQW2A0A096LPI5 108 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-209ENST00000532725 LINC01546A6NGU7 62 aa12.82□□□□□ -0.36
CPSF1-209ENST00000532725 HAMPP81172 84 aa12.82□□□□□ -0.36
CPSF1-209ENST00000532725 HIGD2BQ4VC39 106 aa12.82□□□□□ -0.36
CPSF1-209ENST00000532725 FAT1Q14517 4588 aa12.82□□□□□ -0.36
CPSF1-209ENST00000532725 IGHV1-58A0A0C4DH39 117 aa12.81□□□□□ -0.36
CPSF1-209ENST00000532725 IGIPA6NJ69 53 aa12.81□□□□□ -0.36
CPSF1-209ENST00000532725 SDIM1Q6ZPB5 146 aa12.81□□□□□ -0.36
CPSF1-209ENST00000532725 G0S2P27469 103 aa12.8□□□□□ -0.36
CPSF1-209ENST00000532725 TMEM141Q96I45 108 aa12.8□□□□□ -0.36
CPSF1-209ENST00000532725 COX7A2LO14548 114 aa12.79□□□□□ -0.36
CPSF1-209ENST00000532725 NPSP0C0P6 89 aa12.79□□□□□ -0.36
CPSF1-209ENST00000532725 TOMM6Q96B49 74 aa12.79□□□□□ -0.36
CPSF1-209ENST00000532725 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-209ENST00000532725 IGHV3OR16-9A0A0B4J2B5 98 aa12.78□□□□□ -0.36
CPSF1-209ENST00000532725 IFITM10A6NMD0 228 aa12.78□□□□□ -0.36
CPSF1-209ENST00000532725 C5orf38Q86SI9 138 aa12.78□□□□□ -0.36
CPSF1-209ENST00000532725 SMR3BP02814 79 aaPredicted RBP12.77□□□□□ -0.37
CPSF1-209ENST00000532725 AMELXQ99217 191 aa12.77□□□□□ -0.37
CPSF1-209ENST00000532725 CHAC1Q9BUX1 264 aa12.77□□□□□ -0.37
CPSF1-209ENST00000532725 SMCO4Q9NRQ5 59 aa12.77□□□□□ -0.37
CPSF1-209ENST00000532725 MALP21145 153 aa12.76□□□□□ -0.37
CPSF1-209ENST00000532725 TEX43Q6ZNM6 134 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms