RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 FAM213BQ8TBF2 198 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 C18orf32Q8TCD1 76 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 PPDPFLQ8WWR9 84 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 COPS9Q8WXC6 57 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 PMCHL2Q9BQD1 86 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 SLC35B3Q9H1N7 401 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 DPH3P1Q9H4G8 78 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 ARFGEF2Q9Y6D5 1785 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 MUC2Q02817 5179 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 PDCD11Q14690 1871 aaKnown RBP0.92□□□□□ -2.26
CPNE3-207ENST00000523588 TRPM7Q96QT4 1865 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 ITSN1Q15811 1721 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 SUPT6HQ7KZ85 1726 aaKnown RBP0.92□□□□□ -2.26
CPNE3-207ENST00000523588 XRN1Q8IZH2 1706 aaKnown RBP0.92□□□□□ -2.26
CPNE3-207ENST00000523588 IFT172Q9UG01 1749 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 C1orf167Q5SNV9 1468 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 BTAF1O14981 1849 aa0.92□□□□□ -2.26
CPNE3-207ENST00000523588 MROH2AA6NES4 1674 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 ZNF142P52746 1687 aaPredicted RBP0.91□□□□□ -2.26
CPNE3-207ENST00000523588 KIAA1109Q2LD37 5005 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 CFAP43Q8NDM7 1665 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 SIPA1L3O60292 1781 aaPredicted RBP0.91□□□□□ -2.26
CPNE3-207ENST00000523588 RGPD2P0DJD1 1756 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 KIDINS220Q9ULH0 1771 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 KIAA0556O60303 1618 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 MYO3AQ8NEV4 1616 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 PTPN23Q9H3S7 1636 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 NUPR2A6NF83 97 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 NAP1L6A6NFF2 107 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 UMAD1C9J7I0 102 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 SSSCA1O60232 199 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 IGKCP01834 107 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 IL5P05113 134 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 NPC2P61916 151 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 BLCAPP62952 87 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 PMCHL1Q16048 86 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 KRTAP19-3Q7Z4W3 81 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 MYOZ3Q8TDC0 251 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 CCL19Q99731 98 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 RABAC1Q9UI14 185 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 NINQ8N4C6 2090 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 RGPD1P0DJD0 1748 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 RALGAPBQ86X10 1494 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 PXDNQ92626 1479 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 CFAP74Q9C0B2 1584 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 UGGT1Q9NYU2 1555 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 LAMB1P07942 1786 aa0.91□□□□□ -2.26
CPNE3-207ENST00000523588 C10orf71Q711Q0 1435 aa0.9□□□□□ -2.26
CPNE3-207ENST00000523588 DOCK11Q5JSL3 2073 aa0.9□□□□□ -2.26
CPNE3-207ENST00000523588 ABCC1P33527 1531 aa0.9□□□□□ -2.26
CPNE3-207ENST00000523588 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.9□□□□□ -2.26
CPNE3-207ENST00000523588 ARHGEF12Q9NZN5 1544 aa0.9□□□□□ -2.26
CPNE3-207ENST00000523588 ABCA5Q8WWZ7 1642 aa0.9□□□□□ -2.26
CPNE3-207ENST00000523588 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.9□□□□□ -2.27
CPNE3-207ENST00000523588 FXYD6-FXYD2A0A087WZ82 144 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 KANTRA0A1W2PQU2 76 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 INSL4Q14641 139 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 C5orf38Q86SI9 138 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 DEFB107AQ8IZN7 70 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 Q8N8P6 123 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 TSKUQ8WUA8 353 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 FXYD6Q9H0Q3 95 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 C10orf95Q9H7T3 257 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 TMEM242Q9NWH2 141 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 ATP7BP35670 1465 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 UNC13BO14795 1591 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 TOPAZ1Q8N9V7 1692 aa0.9□□□□□ -2.27
CPNE3-207ENST00000523588 EDC4Q6P2E9 1401 aaKnown RBP0.89□□□□□ -2.27
CPNE3-207ENST00000523588 EFCAB6Q5THR3 1501 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 ZMYM4Q5VZL5 1548 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 KIAA0586Q9BVV6 1533 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 NUP188Q5SRE5 1749 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 DSTQ03001 7570 aaKnown RBP0.89□□□□□ -2.27
CPNE3-207ENST00000523588 RGPD8O14715 1765 aaPredicted RBP0.89□□□□□ -2.27
CPNE3-207ENST00000523588 RGPD5Q99666 1765 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 NKTRP30414 1462 aaKnown RBP0.89□□□□□ -2.27
CPNE3-207ENST00000523588 TRAV2A0A0B4J234 112 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 TRAV17A0A0B4J275 112 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 LOC107984156A0A0G2JMH3 177 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 A0A0G2JND7 137 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 UBE2L5PA0A1B0GUS4 154 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 SNRPGP15A8MWD9 76 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 ATOX1O00244 68 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 SMIM13P0DJ93 91 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 ATP5EP56381 51 aaPredicted RBP0.89□□□□□ -2.27
CPNE3-207ENST00000523588 KRTDAPP60985 99 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 PCBD1P61457 104 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 UBE2L3P68036 154 aaKnown RBP0.89□□□□□ -2.27
CPNE3-207ENST00000523588 CCL8P80075 99 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 ASB16-AS1Q495Z4 193 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 CFAP126Q5VTH2 177 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 COMMD6Q7Z4G1 85 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 Q86TA4 180 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 ARL17AQ8IVW1 177 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 NXT2Q9NPJ8 142 aaKnown RBP0.89□□□□□ -2.27
CPNE3-207ENST00000523588 MANBALQ9NQG1 85 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 HIGD1BQ9P298 99 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 LINC00474Q9P2X8 69 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 NEBP20929 6669 aa0.89□□□□□ -2.27
CPNE3-207ENST00000523588 MYO7AQ13402 2215 aa0.89□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms