RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	MIA	Q16674	131 aa		5.27	□□□□□ -1.57
LIMCH1-222	ENST00000515847	RNASEK	Q6P5S7	137 aa	Known RBP	5.27	□□□□□ -1.57
LIMCH1-222	ENST00000515847	FA2H	Q7L5A8	372 aa		5.27	□□□□□ -1.57
LIMCH1-222	ENST00000515847		Q8N8P6	123 aa		5.27	□□□□□ -1.57
LIMCH1-222	ENST00000515847	C1orf43	Q9BWL3	253 aa		5.27	□□□□□ -1.57
LIMCH1-222	ENST00000515847	SPANXA1	Q9NS26	97 aa		5.27	□□□□□ -1.57
LIMCH1-222	ENST00000515847		Q9UF83	564 aa		5.27	□□□□□ -1.57
LIMCH1-222	ENST00000515847	TGIF2-C20orf24	A0A0A6YYL0	155 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	TRAV8-4	A0A0B4J246	113 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	TSHB	P01222	138 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	NPS	P0C0P6	89 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	FGF6	P10767	208 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	IFI27	P40305	119 aa	Predicted RBP	5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	RBX1	P62877	108 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	MPV17L2	Q567V2	206 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847		Q6ZN92	141 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	MRPL52	Q86TS9	123 aa	Known RBP	5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	CBLN2	Q8IUK8	224 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	PRSS3P2	Q8NHM4	247 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	UBE2W	Q96B02	151 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	TIMM21	Q9BVV7	248 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	CYSLTR1	Q9Y271	337 aa		5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	CSDC2	Q9Y534	153 aa	Known RBP	5.26	□□□□□ -1.57
LIMCH1-222	ENST00000515847	CCL25	O15444	150 aa		5.25	□□□□□ -1.57
LIMCH1-222	ENST00000515847	ESD	P10768	282 aa		5.25	□□□□□ -1.57
LIMCH1-222	ENST00000515847	KRTAP19-4	Q3LI73	84 aa		5.25	□□□□□ -1.57
LIMCH1-222	ENST00000515847	C14orf177	Q52M58	125 aa		5.25	□□□□□ -1.57
LIMCH1-222	ENST00000515847	ATRAID	Q6UW56	229 aa		5.25	□□□□□ -1.57
LIMCH1-222	ENST00000515847	NTM-AS1	Q6ZSK4	140 aa		5.25	□□□□□ -1.57
LIMCH1-222	ENST00000515847	KRTAP1-5	Q9BYS1	174 aa		5.25	□□□□□ -1.57
LIMCH1-222	ENST00000515847	KLK12	Q9UKR0	248 aa		5.25	□□□□□ -1.57
LIMCH1-222	ENST00000515847	DNAH11	Q96DT5	4516 aa		5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	EPPK1	P58107	5090 aa	Known RBP	5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	LOC389332	A0A1B0GUA5	103 aa		5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	IGKV2-29	A2NJV5	120 aa	Predicted RBP	5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	C20orf203	Q8NBC4	194 aa		5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	C2orf88	Q9BSF0	95 aa		5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	ALKBH7	Q9BT30	221 aa	Predicted RBP	5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847		Q9HAA7	133 aa		5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	AP5S1	Q9NUS5	200 aa		5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	PKD1	P98161	4303 aa		5.24	□□□□□ -1.57
LIMCH1-222	ENST00000515847	IGKV2D-24	A0A075B6R9	120 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847	PRSS29P	A6NIE9	313 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847	ATP6V1G1	O75348	118 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847	REG3A	Q06141	175 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847	SS18	Q15532	418 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847	C21orf62-AS1	Q17RA5	79 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847	KIAA1644	Q3SXP7	199 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847		Q8N976	141 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847	PRR34	Q9NV39	138 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847	PKHD1	P08F94	4074 aa		5.23	□□□□□ -1.57
LIMCH1-222	ENST00000515847	RTL8C	O15255	209 aa		5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	GAS8-AS1	O95177	125 aa		5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	SEC11A	P67812	179 aa		5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	MRPS36	P82909	103 aa	Known RBP	5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	CFAP161	Q6P656	301 aa		5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	C2orf66	Q6UXQ4	117 aa		5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	LINC00269	Q8N2A0	174 aa		5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	CHCHD1	Q96BP2	118 aa	Known RBP	5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	YPEL4	Q96NS1	127 aa		5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	UBE2D4	Q9Y2X8	147 aa		5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	PYGO1	Q9Y3Y4	419 aa		5.22	□□□□□ -1.57
LIMCH1-222	ENST00000515847	HBD	P02042	147 aa		5.21	□□□□□ -1.58
LIMCH1-222	ENST00000515847	TEX43	Q6ZNM6	134 aa		5.21	□□□□□ -1.58
LIMCH1-222	ENST00000515847	BAGE3	Q86Y29	109 aa		5.21	□□□□□ -1.58
LIMCH1-222	ENST00000515847	ZNF664	Q8N3J9	261 aa		5.21	□□□□□ -1.58
LIMCH1-222	ENST00000515847	NTN5	Q8WTR8	489 aa	Predicted RBP	5.21	□□□□□ -1.58
LIMCH1-222	ENST00000515847	TMEM141	Q96I45	108 aa		5.21	□□□□□ -1.58
LIMCH1-222	ENST00000515847	TIMM17A	Q99595	171 aa		5.21	□□□□□ -1.58
LIMCH1-222	ENST00000515847	KRTAP4-2	Q9BYR5	136 aa		5.21	□□□□□ -1.58
LIMCH1-222	ENST00000515847	PKIG	Q9Y2B9	76 aa		5.21	□□□□□ -1.58
LIMCH1-222	ENST00000515847	IFITM10	A6NMD0	228 aa		5.2	□□□□□ -1.58
LIMCH1-222	ENST00000515847	C1orf196	B1AJZ1	125 aa		5.2	□□□□□ -1.58
LIMCH1-222	ENST00000515847		H3BS24	57 aa		5.2	□□□□□ -1.58
LIMCH1-222	ENST00000515847	HSBP1	O75506	76 aa		5.2	□□□□□ -1.58
LIMCH1-222	ENST00000515847	LINC00614	P0C842	121 aa		5.2	□□□□□ -1.58
LIMCH1-222	ENST00000515847	CLPSL2	Q6UWE3	100 aa		5.2	□□□□□ -1.58
LIMCH1-222	ENST00000515847	C18orf32	Q8TCD1	76 aa		5.2	□□□□□ -1.58
LIMCH1-222	ENST00000515847	CDC42SE2	Q9NRR3	84 aa		5.2	□□□□□ -1.58
LIMCH1-222	ENST00000515847	DYNC1H1	Q14204	4646 aa	Known RBP	5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	IGLV4-60	A0A075B6I1	120 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	IGKV3OR2-268	A0A0C4DH90	116 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	LINC01546	A6NGU7	62 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	KRTAP9-7	A8MTY7	169 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	ATP5L	O75964	103 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	APOM	O95445	188 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	TRGC2	P03986	189 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	ERAS	Q7Z444	233 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	TOMM6	Q96B49	74 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	SCGB3A1	Q96QR1	104 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	VCX2	Q9H322	139 aa		5.19	□□□□□ -1.58
LIMCH1-222	ENST00000515847	COLCA2	A8K830	154 aa		5.18	□□□□□ -1.58
LIMCH1-222	ENST00000515847	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	5.18	□□□□□ -1.58
LIMCH1-222	ENST00000515847	MAL	P21145	153 aa		5.18	□□□□□ -1.58
LIMCH1-222	ENST00000515847	RPL39	P62891	51 aa	Known RBP	5.18	□□□□□ -1.58
LIMCH1-222	ENST00000515847	CD164L2	Q6UWJ8	174 aa		5.18	□□□□□ -1.58
LIMCH1-222	ENST00000515847	ENHO	Q6UWT2	76 aa		5.18	□□□□□ -1.58
LIMCH1-222	ENST00000515847		Q6ZRN7	208 aa	Predicted RBP	5.18	□□□□□ -1.58
LIMCH1-222	ENST00000515847		Q6ZUT4	128 aa		5.18	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms