RNA–Protein interactions for RNA: ENST00000515261.1

PDLIM3-211, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 622 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-211ENST00000515261 TEX46H3BTG2 121 aa9.56□□□□□ -0.88
PDLIM3-211ENST00000515261 BCL2P10415 239 aa9.56□□□□□ -0.88
PDLIM3-211ENST00000515261 MEF2BQ02080 365 aaPredicted RBP9.56□□□□□ -0.88
PDLIM3-211ENST00000515261 C1orf137Q5JT78 98 aa9.56□□□□□ -0.88
PDLIM3-211ENST00000515261 MRAP2Q96G30 205 aa9.56□□□□□ -0.88
PDLIM3-211ENST00000515261 RPP21Q9H633 154 aaKnown RBP9.56□□□□□ -0.88
PDLIM3-211ENST00000515261 TRAV1-1A0A0B4J248 108 aa9.55□□□□□ -0.88
PDLIM3-211ENST00000515261 MALP21145 153 aa9.55□□□□□ -0.88
PDLIM3-211ENST00000515261 FOXA3P55318 350 aaPredicted RBP9.55□□□□□ -0.88
PDLIM3-211ENST00000515261 C9orf116Q5BN46 136 aaPredicted RBP9.55□□□□□ -0.88
PDLIM3-211ENST00000515261 HMSDA8MTL9 139 aa9.54□□□□□ -0.88
PDLIM3-211ENST00000515261 APOMO95445 188 aa9.54□□□□□ -0.88
PDLIM3-211ENST00000515261 ESDP10768 282 aa9.54□□□□□ -0.88
PDLIM3-211ENST00000515261 PRR26Q8N8Z3 221 aa9.54□□□□□ -0.88
PDLIM3-211ENST00000515261 NUP35Q8NFH5 326 aa9.54□□□□□ -0.88
PDLIM3-211ENST00000515261 CAMK2N2Q96S95 79 aa9.54□□□□□ -0.88
PDLIM3-211ENST00000515261 RNASE7Q9H1E1 156 aaKnown RBP9.54□□□□□ -0.88
PDLIM3-211ENST00000515261 BATF3Q9NR55 127 aa9.54□□□□□ -0.88
PDLIM3-211ENST00000515261 CDC42SE2Q9NRR3 84 aa9.54□□□□□ -0.88
PDLIM3-211ENST00000515261 TRBV6-5A0A0K0K1A5 114 aa9.53□□□□□ -0.88
PDLIM3-211ENST00000515261 TMEM242Q9NWH2 141 aa9.53□□□□□ -0.88
PDLIM3-211ENST00000515261 COX7A2LO14548 114 aa9.52□□□□□ -0.89
PDLIM3-211ENST00000515261 TSHBP01222 138 aa9.52□□□□□ -0.89
PDLIM3-211ENST00000515261 RPL18AQ02543 176 aaKnown RBP9.52□□□□□ -0.89
PDLIM3-211ENST00000515261 PHF5AQ7RTV0 110 aaKnown RBP9.52□□□□□ -0.89
PDLIM3-211ENST00000515261 MRPL52Q86TS9 123 aaKnown RBP9.52□□□□□ -0.89
PDLIM3-211ENST00000515261 DIRC1Q969H9 104 aa9.52□□□□□ -0.89
PDLIM3-211ENST00000515261 FAM210AQ96ND0 272 aa9.52□□□□□ -0.89
PDLIM3-211ENST00000515261 ST20Q9HBF5 79 aa9.52□□□□□ -0.89
PDLIM3-211ENST00000515261 C1orf196B1AJZ1 125 aa9.51□□□□□ -0.89
PDLIM3-211ENST00000515261 MUC2Q02817 5179 aa9.5□□□□□ -0.89
PDLIM3-211ENST00000515261 C7orf77A4D0Y5 90 aa9.5□□□□□ -0.89
PDLIM3-211ENST00000515261 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.5□□□□□ -0.89
PDLIM3-211ENST00000515261 IGLV7-43P04211 117 aa9.5□□□□□ -0.89
PDLIM3-211ENST00000515261 C2orf48Q96LS8 159 aa9.5□□□□□ -0.89
PDLIM3-211ENST00000515261 K7EN84 100 aa9.49□□□□□ -0.89
PDLIM3-211ENST00000515261 OCC1Q8TAD7 63 aa9.49□□□□□ -0.89
PDLIM3-211ENST00000515261 RGS21Q2M5E4 152 aa9.48□□□□□ -0.89
PDLIM3-211ENST00000515261 OPRPNQ99935 248 aaPredicted RBP9.48□□□□□ -0.89
PDLIM3-211ENST00000515261 A0A087WZ39 114 aa9.47□□□□□ -0.89
PDLIM3-211ENST00000515261 A0A0U1RQV1 116 aa9.47□□□□□ -0.89
PDLIM3-211ENST00000515261 H0Y9J4 135 aa9.47□□□□□ -0.89
PDLIM3-211ENST00000515261 POLR2KP53803 58 aaKnown RBP9.47□□□□□ -0.89
PDLIM3-211ENST00000515261 PRR4Q16378 134 aa9.47□□□□□ -0.89
PDLIM3-211ENST00000515261 TSKUQ8WUA8 353 aa9.47□□□□□ -0.89
PDLIM3-211ENST00000515261 BORCS7Q96B45 105 aa9.47□□□□□ -0.89
PDLIM3-211ENST00000515261 IGLV1-50A0A075B6I6 118 aa9.46□□□□□ -0.9
PDLIM3-211ENST00000515261 TRAV13-1A0A0B4J241 112 aa9.46□□□□□ -0.9
PDLIM3-211ENST00000515261 TRBV27A0A0K0K1C4 114 aa9.46□□□□□ -0.9
PDLIM3-211ENST00000515261 A8MWL6 223 aa9.46□□□□□ -0.9
PDLIM3-211ENST00000515261 GATCO43716 136 aaKnown RBP9.46□□□□□ -0.9
PDLIM3-211ENST00000515261 SPAG11BQ08648 103 aa9.46□□□□□ -0.9
PDLIM3-211ENST00000515261 LCE2DQ5TA82 110 aaPredicted RBP9.46□□□□□ -0.9
PDLIM3-211ENST00000515261 C5orf38Q86SI9 138 aa9.46□□□□□ -0.9
PDLIM3-211ENST00000515261 FCER1GP30273 86 aa9.45□□□□□ -0.9
PDLIM3-211ENST00000515261 TAGLN2P37802 199 aaKnown RBP9.45□□□□□ -0.9
PDLIM3-211ENST00000515261 SMAGPQ0VAQ4 97 aa9.45□□□□□ -0.9
PDLIM3-211ENST00000515261 RNF151Q2KHN1 245 aa9.45□□□□□ -0.9
PDLIM3-211ENST00000515261 RNASE13Q5GAN3 156 aaKnown RBP9.45□□□□□ -0.9
PDLIM3-211ENST00000515261 KRTAP9-2Q9BYQ4 174 aa9.45□□□□□ -0.9
PDLIM3-211ENST00000515261 CSDC2Q9Y534 153 aaKnown RBP9.45□□□□□ -0.9
PDLIM3-211ENST00000515261 VCYO14598 125 aa9.43□□□□□ -0.9
PDLIM3-211ENST00000515261 UBE2D1P51668 147 aa9.43□□□□□ -0.9
PDLIM3-211ENST00000515261 IMMP2LQ96T52 175 aa9.43□□□□□ -0.9
PDLIM3-211ENST00000515261 TMEM191AQ9H0A3 160 aa9.43□□□□□ -0.9
PDLIM3-211ENST00000515261 UBE2D4Q9Y2X8 147 aa9.43□□□□□ -0.9
PDLIM3-211ENST00000515261 RAB4AP20338 218 aa9.42□□□□□ -0.9
PDLIM3-211ENST00000515261 FAM231DQ6ZW35 169 aa9.42□□□□□ -0.9
PDLIM3-211ENST00000515261 OR10D4PQ8NGN7 298 aa9.42□□□□□ -0.9
PDLIM3-211ENST00000515261 MRPL35Q9NZE8 188 aaKnown RBP9.42□□□□□ -0.9
PDLIM3-211ENST00000515261 FAM168BA1KXE4 195 aa9.41□□□□□ -0.9
PDLIM3-211ENST00000515261 KRTAP11-1Q8IUC1 163 aa9.41□□□□□ -0.9
PDLIM3-211ENST00000515261 A0A1B0GUT8 65 aa9.4□□□□□ -0.9
PDLIM3-211ENST00000515261 KRTAP1-4P0C5Y4 121 aa9.4□□□□□ -0.9
PDLIM3-211ENST00000515261 RPL13AP40429 203 aaKnown RBP9.4□□□□□ -0.9
PDLIM3-211ENST00000515261 CT83Q5H943 113 aa9.4□□□□□ -0.9
PDLIM3-211ENST00000515261 Q6ZUT4 128 aa9.4□□□□□ -0.9
PDLIM3-211ENST00000515261 FAM19A5Q7Z5A7 132 aaPredicted RBP9.4□□□□□ -0.9
PDLIM3-211ENST00000515261 AMN1Q8IY45 258 aa9.4□□□□□ -0.9
PDLIM3-211ENST00000515261 ORAOV1Q8WV07 137 aa9.4□□□□□ -0.9
PDLIM3-211ENST00000515261 KIR2DL4Q99706 377 aa9.4□□□□□ -0.9
PDLIM3-211ENST00000515261 HIGD1CA8MV81 97 aa9.39□□□□□ -0.91
PDLIM3-211ENST00000515261 F8WDY8 70 aa9.39□□□□□ -0.91
PDLIM3-211ENST00000515261 NDUFA1O15239 70 aa9.39□□□□□ -0.91
PDLIM3-211ENST00000515261 TMEM18Q96B42 140 aa9.39□□□□□ -0.91
PDLIM3-211ENST00000515261 SMKR1H3BMG3 65 aa9.38□□□□□ -0.91
PDLIM3-211ENST00000515261 PPP1R17O96001 155 aa9.38□□□□□ -0.91
PDLIM3-211ENST00000515261 SUMO2P61956 95 aaKnown RBP9.38□□□□□ -0.91
PDLIM3-211ENST00000515261 UBE2BP63146 152 aa9.38□□□□□ -0.91
PDLIM3-211ENST00000515261 TLX1NBP0CAT3 122 aa9.37□□□□□ -0.91
PDLIM3-211ENST00000515261 TMEM241Q24JQ0 296 aa9.37□□□□□ -0.91
PDLIM3-211ENST00000515261 GAGE2EQ4V326 116 aa9.37□□□□□ -0.91
PDLIM3-211ENST00000515261 TIMM21Q9BVV7 248 aa9.37□□□□□ -0.91
PDLIM3-211ENST00000515261 GAGE2DQ9UEU5 116 aa9.37□□□□□ -0.91
PDLIM3-211ENST00000515261 TMEM250H0YL14 139 aa9.36□□□□□ -0.91
PDLIM3-211ENST00000515261 C10orf25Q5T742 122 aa9.36□□□□□ -0.91
PDLIM3-211ENST00000515261 M0QXV9 152 aa9.35□□□□□ -0.91
PDLIM3-211ENST00000515261 CEBPGP53567 150 aa9.35□□□□□ -0.91
PDLIM3-211ENST00000515261 UNQ6190/PRO20217Q6UXQ8 127 aa9.35□□□□□ -0.91
PDLIM3-211ENST00000515261 NRACQ8N912 160 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms