RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 INAFM2P0DMQ5 153 aa11.15□□□□□ -0.62
SYNE4-207ENST00000505054 MRPL52Q86TS9 123 aaKnown RBP11.15□□□□□ -0.62
SYNE4-207ENST00000505054 C1orf43Q9BWL3 253 aa11.15□□□□□ -0.62
SYNE4-207ENST00000505054 PGPEP1Q9NXJ5 209 aa11.15□□□□□ -0.62
SYNE4-207ENST00000505054 COX11Q9Y6N1 276 aa11.15□□□□□ -0.62
SYNE4-207ENST00000505054 EREGO14944 169 aa11.14□□□□□ -0.63
SYNE4-207ENST00000505054 TCAPO15273 167 aa11.14□□□□□ -0.63
SYNE4-207ENST00000505054 ZNF25P17030 456 aaPredicted RBP11.14□□□□□ -0.63
SYNE4-207ENST00000505054 COX19Q49B96 90 aa11.14□□□□□ -0.63
SYNE4-207ENST00000505054 KRTAP26-1Q6PEX3 210 aa11.14□□□□□ -0.63
SYNE4-207ENST00000505054 YPEL4Q96NS1 127 aa11.14□□□□□ -0.63
SYNE4-207ENST00000505054 MAP1LC3AQ9H492 121 aa11.14□□□□□ -0.63
SYNE4-207ENST00000505054 LOC389332A0A1B0GUA5 103 aa11.13□□□□□ -0.63
SYNE4-207ENST00000505054 MT-ND6P03923 174 aa11.13□□□□□ -0.63
SYNE4-207ENST00000505054 IGLV10-54A0A075B6I4 117 aa11.12□□□□□ -0.63
SYNE4-207ENST00000505054 LECT2O14960 151 aa11.12□□□□□ -0.63
SYNE4-207ENST00000505054 FUSP35637 526 aaKnown RBP eCLIP11.12□□□□□ -0.63
SYNE4-207ENST00000505054 Q5VSD8 79 aa11.12□□□□□ -0.63
SYNE4-207ENST00000505054 OR5A1Q8NGJ0 315 aa11.12□□□□□ -0.63
SYNE4-207ENST00000505054 BAALCQ8WXS3 180 aa11.12□□□□□ -0.63
SYNE4-207ENST00000505054 MRPL18Q9H0U6 180 aaKnown RBP11.12□□□□□ -0.63
SYNE4-207ENST00000505054 UBE2D4Q9Y2X8 147 aa11.12□□□□□ -0.63
SYNE4-207ENST00000505054 XGP55808 180 aa11.11□□□□□ -0.63
SYNE4-207ENST00000505054 RPL39P62891 51 aaKnown RBP11.11□□□□□ -0.63
SYNE4-207ENST00000505054 CBLN2Q8IUK8 224 aa11.11□□□□□ -0.63
SYNE4-207ENST00000505054 Q8N8P6 123 aa11.11□□□□□ -0.63
SYNE4-207ENST00000505054 TMEM101Q96IK0 257 aa11.11□□□□□ -0.63
SYNE4-207ENST00000505054 Q8N814 137 aa11.1□□□□□ -0.63
SYNE4-207ENST00000505054 ALKBH7Q9BT30 221 aaPredicted RBP11.1□□□□□ -0.63
SYNE4-207ENST00000505054 CDC42SE2Q9NRR3 84 aa11.1□□□□□ -0.63
SYNE4-207ENST00000505054 VPS13BQ7Z7G8 4022 aa11.1□□□□□ -0.63
SYNE4-207ENST00000505054 TRAV8-4A0A0B4J246 113 aa11.09□□□□□ -0.63
SYNE4-207ENST00000505054 IGKV3OR2-268A0A0C4DH90 116 aa11.09□□□□□ -0.63
SYNE4-207ENST00000505054 RAB5AP20339 215 aa11.09□□□□□ -0.63
SYNE4-207ENST00000505054 FABP9Q0Z7S8 132 aa11.09□□□□□ -0.63
SYNE4-207ENST00000505054 TIMM21Q9BVV7 248 aa11.09□□□□□ -0.63
SYNE4-207ENST00000505054 CSDC2Q9Y534 153 aaKnown RBP11.09□□□□□ -0.63
SYNE4-207ENST00000505054 IFI27P40305 119 aaPredicted RBP11.08□□□□□ -0.64
SYNE4-207ENST00000505054 ZNF664Q8N3J9 261 aa11.08□□□□□ -0.64
SYNE4-207ENST00000505054 TMEM18Q96B42 140 aa11.08□□□□□ -0.64
SYNE4-207ENST00000505054 FAT1Q14517 4588 aa11.08□□□□□ -0.64
SYNE4-207ENST00000505054 MYCBP2O75592 4640 aa11.07□□□□□ -0.64
SYNE4-207ENST00000505054 DGAT2L7PQ6IED9 249 aa11.07□□□□□ -0.64
SYNE4-207ENST00000505054 Q6ZUT4 128 aa11.07□□□□□ -0.64
SYNE4-207ENST00000505054 FAM104AQ969W3 186 aa11.07□□□□□ -0.64
SYNE4-207ENST00000505054 NXT2Q9NPJ8 142 aaKnown RBP11.07□□□□□ -0.64
SYNE4-207ENST00000505054 SMCO4Q9NRQ5 59 aa11.07□□□□□ -0.64
SYNE4-207ENST00000505054 TRAPPC1Q9Y5R8 145 aa11.07□□□□□ -0.64
SYNE4-207ENST00000505054 SMAGPQ0VAQ4 97 aa11.06□□□□□ -0.64
SYNE4-207ENST00000505054 RNASE13Q5GAN3 156 aaKnown RBP11.06□□□□□ -0.64
SYNE4-207ENST00000505054 LINC00959A0A1B0GUT2 108 aa11.05□□□□□ -0.64
SYNE4-207ENST00000505054 KRTAP10-1P60331 282 aa11.05□□□□□ -0.64
SYNE4-207ENST00000505054 CHCHD10Q8WYQ3 142 aaPredicted RBP11.05□□□□□ -0.64
SYNE4-207ENST00000505054 SPANXA1Q9NS26 97 aa11.05□□□□□ -0.64
SYNE4-207ENST00000505054 GAGE12HA6NDE8 117 aa11.04□□□□□ -0.64
SYNE4-207ENST00000505054 USP17L23D6RBM5 183 aa11.04□□□□□ -0.64
SYNE4-207ENST00000505054 K7EMI3 77 aa11.04□□□□□ -0.64
SYNE4-207ENST00000505054 ORMDL2Q53FV1 153 aa11.04□□□□□ -0.64
SYNE4-207ENST00000505054 NTN5Q8WTR8 489 aaPredicted RBP11.04□□□□□ -0.64
SYNE4-207ENST00000505054 OPRPNQ99935 248 aaPredicted RBP11.04□□□□□ -0.64
SYNE4-207ENST00000505054 FLG2Q5D862 2391 aaPredicted RBP11.04□□□□□ -0.64
SYNE4-207ENST00000505054 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.02□□□□□ -0.65
SYNE4-207ENST00000505054 IGLV5-52A0A0A0MRZ9 124 aa11.02□□□□□ -0.65
SYNE4-207ENST00000505054 MRPS36P82909 103 aaKnown RBP11.02□□□□□ -0.65
SYNE4-207ENST00000505054 C2orf66Q6UXQ4 117 aa11.02□□□□□ -0.65
SYNE4-207ENST00000505054 PRSS3P2Q8NHM4 247 aa11.02□□□□□ -0.65
SYNE4-207ENST00000505054 CYSLTR1Q9Y271 337 aa11.02□□□□□ -0.65
SYNE4-207ENST00000505054 LINC01546A6NGU7 62 aa11.01□□□□□ -0.65
SYNE4-207ENST00000505054 CCL25O15444 150 aa11.01□□□□□ -0.65
SYNE4-207ENST00000505054 XCL1P47992 114 aa11.01□□□□□ -0.65
SYNE4-207ENST00000505054 FOXI1Q12951 378 aa11.01□□□□□ -0.65
SYNE4-207ENST00000505054 PYGO1Q9Y3Y4 419 aa11.01□□□□□ -0.65
SYNE4-207ENST00000505054 IGLV4-3A0A075B6K6 122 aa11□□□□□ -0.65
SYNE4-207ENST00000505054 GCSHP23434 173 aa11□□□□□ -0.65
SYNE4-207ENST00000505054 C14orf177Q52M58 125 aa11□□□□□ -0.65
SYNE4-207ENST00000505054 C18orf32Q8TCD1 76 aa11□□□□□ -0.65
SYNE4-207ENST00000505054 TRAV13-1A0A0B4J241 112 aa10.99□□□□□ -0.65
SYNE4-207ENST00000505054 SMR3BP02814 79 aaPredicted RBP10.99□□□□□ -0.65
SYNE4-207ENST00000505054 PRSS1P07477 247 aa10.99□□□□□ -0.65
SYNE4-207ENST00000505054 SS18Q15532 418 aa10.99□□□□□ -0.65
SYNE4-207ENST00000505054 SRRM2Q9UQ35 2752 aaKnown RBP10.99□□□□□ -0.65
SYNE4-207ENST00000505054 FAM229AH3BQW9 127 aa10.98□□□□□ -0.65
SYNE4-207ENST00000505054 C15orf56Q8N910 161 aa10.98□□□□□ -0.65
SYNE4-207ENST00000505054 URB1-AS1Q96HZ7 61 aa10.98□□□□□ -0.65
SYNE4-207ENST00000505054 IGIPA6NJ69 53 aa10.97□□□□□ -0.65
SYNE4-207ENST00000505054 C1orf196B1AJZ1 125 aa10.97□□□□□ -0.65
SYNE4-207ENST00000505054 SCO1O75880 301 aa10.97□□□□□ -0.65
SYNE4-207ENST00000505054 CD164L2Q6UWJ8 174 aa10.97□□□□□ -0.65
SYNE4-207ENST00000505054 FA2HQ7L5A8 372 aa10.97□□□□□ -0.65
SYNE4-207ENST00000505054 TOMM6Q96B49 74 aa10.97□□□□□ -0.65
SYNE4-207ENST00000505054 IFITM10A6NMD0 228 aa10.96□□□□□ -0.65
SYNE4-207ENST00000505054 COLCA2A8K830 154 aa10.96□□□□□ -0.65
SYNE4-207ENST00000505054 TMEM141Q96I45 108 aa10.96□□□□□ -0.65
SYNE4-207ENST00000505054 LINC00173Q6ZV60 143 aa10.95□□□□□ -0.66
SYNE4-207ENST00000505054 hDV102S1A0JD36 115 aa10.94□□□□□ -0.66
SYNE4-207ENST00000505054 NPSP0C0P6 89 aa10.94□□□□□ -0.66
SYNE4-207ENST00000505054 G0S2P27469 103 aa10.94□□□□□ -0.66
SYNE4-207ENST00000505054 HAMPP81172 84 aa10.94□□□□□ -0.66
SYNE4-207ENST00000505054 LINC01620Q4KN68 170 aa10.94□□□□□ -0.66
SYNE4-207ENST00000505054 ZC2HC1BQ5TFG8 222 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms