RNA–Protein interactions for RNA: ENST00000504719.6

PVT1-201, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 754 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-201ENST00000504719 KIR2DL4Q99706 377 aa16.56■□□□□ 0.24
PVT1-201ENST00000504719 C7orf77A4D0Y5 90 aa16.55■□□□□ 0.24
PVT1-201ENST00000504719 FAM229AH3BQW9 127 aa16.55■□□□□ 0.24
PVT1-201ENST00000504719 TMEM136Q6ZRR5 245 aa16.55■□□□□ 0.24
PVT1-201ENST00000504719 CLRN3Q8NCR9 226 aa16.55■□□□□ 0.24
PVT1-201ENST00000504719 KRTAP26-1Q6PEX3 210 aa16.54■□□□□ 0.24
PVT1-201ENST00000504719 IGLV10-54A0A075B6I4 117 aa16.53■□□□□ 0.24
PVT1-201ENST00000504719 PHOX2AO14813 284 aa16.53■□□□□ 0.24
PVT1-201ENST00000504719 HLA-DQA1P01909 254 aa16.53■□□□□ 0.24
PVT1-201ENST00000504719 RPL32P62910 135 aaKnown RBP16.53■□□□□ 0.24
PVT1-201ENST00000504719 RHEBQ15382 184 aa16.53■□□□□ 0.24
PVT1-201ENST00000504719 PRELID3AQ96N28 172 aa16.53■□□□□ 0.24
PVT1-201ENST00000504719 RPS10P5Q9NQ39 176 aa16.53■□□□□ 0.24
PVT1-201ENST00000504719 TRAV9-1A0A075B6T8 112 aa16.52■□□□□ 0.24
PVT1-201ENST00000504719 USP17L23D6RBM5 183 aa16.52■□□□□ 0.24
PVT1-201ENST00000504719 ZNF25P17030 456 aaPredicted RBP16.52■□□□□ 0.24
PVT1-201ENST00000504719 S100PP25815 95 aa16.52■□□□□ 0.24
PVT1-201ENST00000504719 SMIM2Q9BVW6 85 aa16.52■□□□□ 0.24
PVT1-201ENST00000504719 TRAV8-4A0A0B4J246 113 aa16.5■□□□□ 0.23
PVT1-201ENST00000504719 IGKV3OR2-268A0A0C4DH90 116 aa16.5■□□□□ 0.23
PVT1-201ENST00000504719 TMEM101Q96IK0 257 aa16.5■□□□□ 0.23
PVT1-201ENST00000504719 APOC3P02656 99 aa16.49■□□□□ 0.23
PVT1-201ENST00000504719 MRPL52Q86TS9 123 aaKnown RBP16.48■□□□□ 0.23
PVT1-201ENST00000504719 OR5A1Q8NGJ0 315 aa16.48■□□□□ 0.23
PVT1-201ENST00000504719 TCAPO15273 167 aa16.47■□□□□ 0.23
PVT1-201ENST00000504719 PRSS1P07477 247 aa16.47■□□□□ 0.23
PVT1-201ENST00000504719 NDUFA5Q16718 116 aa16.47■□□□□ 0.23
PVT1-201ENST00000504719 LAMTOR2Q9Y2Q5 125 aa16.47■□□□□ 0.23
PVT1-201ENST00000504719 SCXQ7RTU7 201 aa16.45■□□□□ 0.22
PVT1-201ENST00000504719 LOC389332A0A1B0GUA5 103 aa16.44■□□□□ 0.22
PVT1-201ENST00000504719 DGAT2L7PQ6IED9 249 aa16.44■□□□□ 0.22
PVT1-201ENST00000504719 SVBPQ8N300 66 aa16.44■□□□□ 0.22
PVT1-201ENST00000504719 MAP1LC3AQ9H492 121 aa16.44■□□□□ 0.22
PVT1-201ENST00000504719 CDC42SE2Q9NRR3 84 aa16.44■□□□□ 0.22
PVT1-201ENST00000504719 TMEM18Q96B42 140 aa16.43■□□□□ 0.22
PVT1-201ENST00000504719 CHAC1Q9BUX1 264 aa16.43■□□□□ 0.22
PVT1-201ENST00000504719 UBE2D4Q9Y2X8 147 aa16.43■□□□□ 0.22
PVT1-201ENST00000504719 PRSS47A8MTI9 375 aa16.42■□□□□ 0.22
PVT1-201ENST00000504719 SNAPINO95295 136 aa16.42■□□□□ 0.22
PVT1-201ENST00000504719 SMAGPQ0VAQ4 97 aa16.42■□□□□ 0.22
PVT1-201ENST00000504719 ZNF664Q8N3J9 261 aa16.42■□□□□ 0.22
PVT1-201ENST00000504719 SRRM2Q9UQ35 2752 aaKnown RBP16.41■□□□□ 0.22
PVT1-201ENST00000504719 RAB5AP20339 215 aa16.41■□□□□ 0.22
PVT1-201ENST00000504719 RPL39P62891 51 aaKnown RBP16.41■□□□□ 0.22
PVT1-201ENST00000504719 KIAA1644Q3SXP7 199 aa16.41■□□□□ 0.22
PVT1-201ENST00000504719 LINC00528Q8N1L1 170 aa16.41■□□□□ 0.22
PVT1-201ENST00000504719 GNB1LQ9BYB4 327 aa16.41■□□□□ 0.22
PVT1-201ENST00000504719 CSDC2Q9Y534 153 aaKnown RBP16.41■□□□□ 0.22
PVT1-201ENST00000504719 GAGE12HA6NDE8 117 aa16.4■□□□□ 0.22
PVT1-201ENST00000504719 CHCHD10Q8WYQ3 142 aaPredicted RBP16.4■□□□□ 0.22
PVT1-201ENST00000504719 C9orf163Q8N9P6 203 aa16.39■□□□□ 0.21
PVT1-201ENST00000504719 CIRBP-AS1Q8TBR5 109 aa16.39■□□□□ 0.21
PVT1-201ENST00000504719 LINC00959A0A1B0GUT2 108 aa16.38■□□□□ 0.21
PVT1-201ENST00000504719 PLA2G1BP04054 148 aaKnown RBP16.38■□□□□ 0.21
PVT1-201ENST00000504719 TIMM21Q9BVV7 248 aa16.38■□□□□ 0.21
PVT1-201ENST00000504719 COX19Q49B96 90 aa16.37■□□□□ 0.21
PVT1-201ENST00000504719 RNASE13Q5GAN3 156 aaKnown RBP16.37■□□□□ 0.21
PVT1-201ENST00000504719 Q8N8P6 123 aa16.37■□□□□ 0.21
PVT1-201ENST00000504719 FLG2Q5D862 2391 aaPredicted RBP16.36■□□□□ 0.21
PVT1-201ENST00000504719 SLC7A5P1Q8MH63 180 aa16.36■□□□□ 0.21
PVT1-201ENST00000504719 TGIF2-C20orf24A0A0A6YYL0 155 aa16.35■□□□□ 0.21
PVT1-201ENST00000504719 XCL1P47992 114 aa16.35■□□□□ 0.21
PVT1-201ENST00000504719 Q6ZUT4 128 aa16.35■□□□□ 0.21
PVT1-201ENST00000504719 hDV102S1A0JD36 115 aa16.34■□□□□ 0.21
PVT1-201ENST00000504719 CCL25O15444 150 aa16.34■□□□□ 0.21
PVT1-201ENST00000504719 SS18Q15532 418 aa16.34■□□□□ 0.21
PVT1-201ENST00000504719 SPANXA1Q9NS26 97 aa16.34■□□□□ 0.21
PVT1-201ENST00000504719 MT-ND6P03923 174 aa16.33■□□□□ 0.2
PVT1-201ENST00000504719 CNBPP62633 177 aaKnown RBP16.33■□□□□ 0.2
PVT1-201ENST00000504719 MRPL18Q9H0U6 180 aaKnown RBP16.33■□□□□ 0.2
PVT1-201ENST00000504719 MYCBP2O75592 4640 aa16.32■□□□□ 0.2
PVT1-201ENST00000504719 IFI27P40305 119 aaPredicted RBP16.32■□□□□ 0.2
PVT1-201ENST00000504719 FOXI1Q12951 378 aa16.32■□□□□ 0.2
PVT1-201ENST00000504719 NXT2Q9NPJ8 142 aaKnown RBP16.32■□□□□ 0.2
PVT1-201ENST00000504719 FABP9Q0Z7S8 132 aa16.31■□□□□ 0.2
PVT1-201ENST00000504719 OPRPNQ99935 248 aaPredicted RBP16.31■□□□□ 0.2
PVT1-201ENST00000504719 SDIM1Q6ZPB5 146 aa16.3■□□□□ 0.2
PVT1-201ENST00000504719 FAM104AQ969W3 186 aa16.3■□□□□ 0.2
PVT1-201ENST00000504719 ALKBH7Q9BT30 221 aaPredicted RBP16.3■□□□□ 0.2
PVT1-201ENST00000504719 TRAV13-1A0A0B4J241 112 aa16.29■□□□□ 0.2
PVT1-201ENST00000504719 C1orf196B1AJZ1 125 aa16.29■□□□□ 0.2
PVT1-201ENST00000504719 SLPIP03973 132 aa16.29■□□□□ 0.2
PVT1-201ENST00000504719 ORMDL2Q53FV1 153 aa16.29■□□□□ 0.2
PVT1-201ENST00000504719 C15orf56Q8N910 161 aa16.29■□□□□ 0.2
PVT1-201ENST00000504719 AP5S1Q9NUS5 200 aa16.29■□□□□ 0.2
PVT1-201ENST00000504719 K7EMI3 77 aa16.28■□□□□ 0.2
PVT1-201ENST00000504719 MRPS36P82909 103 aaKnown RBP16.28■□□□□ 0.2
PVT1-201ENST00000504719 CFAP161Q6P656 301 aa16.28■□□□□ 0.2
PVT1-201ENST00000504719 CD164L2Q6UWJ8 174 aa16.28■□□□□ 0.2
PVT1-201ENST00000504719 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP16.27■□□□□ 0.2
PVT1-201ENST00000504719 KRTAP10-4P60372 401 aaPredicted RBP16.26■□□□□ 0.19
PVT1-201ENST00000504719 C2orf66Q6UXQ4 117 aa16.26■□□□□ 0.19
PVT1-201ENST00000504719 PRSS3P2Q8NHM4 247 aa16.26■□□□□ 0.19
PVT1-201ENST00000504719 CYSLTR1Q9Y271 337 aa16.26■□□□□ 0.19
PVT1-201ENST00000504719 PYGO1Q9Y3Y4 419 aa16.26■□□□□ 0.19
PVT1-201ENST00000504719 TRAPPC1Q9Y5R8 145 aa16.26■□□□□ 0.19
PVT1-201ENST00000504719 HERC1Q15751 4861 aa16.25■□□□□ 0.19
PVT1-201ENST00000504719 TRAV16A0A0A6YYK6 109 aaPredicted RBP16.24■□□□□ 0.19
PVT1-201ENST00000504719 PANO1I0J062 215 aa16.24■□□□□ 0.19
PVT1-201ENST00000504719 HIGD2BQ4VC39 106 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms