RNA–Protein interactions for RNA: ENST00000498438.1

HOXD11-202, Transcript of homeobox D11, humanhuman

TSL 1 (best)

Gene HOXD11, Length 1,259 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11-202ENST00000498438 A0A1B0GXF2 115 aa11.85□□□□□ -0.51
HOXD11-202ENST00000498438 PPP1R2P9O14990 202 aa11.85□□□□□ -0.51
HOXD11-202ENST00000498438 PLA2G1BP04054 148 aaKnown RBP11.85□□□□□ -0.51
HOXD11-202ENST00000498438 AP5S1Q9NUS5 200 aa11.85□□□□□ -0.51
HOXD11-202ENST00000498438 LINC00862A6NCI5 91 aa11.84□□□□□ -0.51
HOXD11-202ENST00000498438 S100A8P05109 93 aa11.84□□□□□ -0.51
HOXD11-202ENST00000498438 CKS2P33552 79 aa11.84□□□□□ -0.51
HOXD11-202ENST00000498438 KIR2DL4Q99706 377 aa11.84□□□□□ -0.51
HOXD11-202ENST00000498438 DMBT1Q9UGM3 2413 aaPredicted RBP11.84□□□□□ -0.51
HOXD11-202ENST00000498438 F8W036 122 aa11.83□□□□□ -0.52
HOXD11-202ENST00000498438 SLPIP03973 132 aa11.83□□□□□ -0.52
HOXD11-202ENST00000498438 CFAP161Q6P656 301 aa11.83□□□□□ -0.52
HOXD11-202ENST00000498438 CDC42SE2Q9NRR3 84 aa11.83□□□□□ -0.52
HOXD11-202ENST00000498438 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.82□□□□□ -0.52
HOXD11-202ENST00000498438 LINC00959A0A1B0GUT2 108 aa11.82□□□□□ -0.52
HOXD11-202ENST00000498438 D6R8Y8 96 aa11.82□□□□□ -0.52
HOXD11-202ENST00000498438 XCL1P47992 114 aa11.82□□□□□ -0.52
HOXD11-202ENST00000498438 FOXI1Q12951 378 aa11.82□□□□□ -0.52
HOXD11-202ENST00000498438 HIGD2BQ4VC39 106 aa11.82□□□□□ -0.52
HOXD11-202ENST00000498438 SDIM1Q6ZPB5 146 aa11.82□□□□□ -0.52
HOXD11-202ENST00000498438 ZNF664Q8N3J9 261 aa11.82□□□□□ -0.52
HOXD11-202ENST00000498438 C20orf78Q9BR46 151 aa11.82□□□□□ -0.52
HOXD11-202ENST00000498438 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.82□□□□□ -0.52
HOXD11-202ENST00000498438 TRBV24-1A0A075B6N3 115 aa11.81□□□□□ -0.52
HOXD11-202ENST00000498438 PANO1I0J062 215 aa11.81□□□□□ -0.52
HOXD11-202ENST00000498438 CCL25O15444 150 aa11.81□□□□□ -0.52
HOXD11-202ENST00000498438 TNFRSF6BO95407 300 aa11.81□□□□□ -0.52
HOXD11-202ENST00000498438 PNRC1Q12796 327 aaPredicted RBP11.81□□□□□ -0.52
HOXD11-202ENST00000498438 CLLU1Q5K131 121 aa11.81□□□□□ -0.52
HOXD11-202ENST00000498438 ATP5L2Q7Z4Y8 100 aa11.81□□□□□ -0.52
HOXD11-202ENST00000498438 IGHV3-64A0A075B6Q5 118 aa11.8□□□□□ -0.52
HOXD11-202ENST00000498438 RPL32P62910 135 aaKnown RBP11.8□□□□□ -0.52
HOXD11-202ENST00000498438 UBE2D4Q9Y2X8 147 aa11.8□□□□□ -0.52
HOXD11-202ENST00000498438 GVQW2A0A096LPI5 108 aaPredicted RBP11.79□□□□□ -0.52
HOXD11-202ENST00000498438 NPYP01303 97 aa11.79□□□□□ -0.52
HOXD11-202ENST00000498438 SS18Q15532 418 aa11.79□□□□□ -0.52
HOXD11-202ENST00000498438 SMIM2Q9BVW6 85 aa11.79□□□□□ -0.52
HOXD11-202ENST00000498438 SMAGPQ0VAQ4 97 aa11.78□□□□□ -0.52
HOXD11-202ENST00000498438 RNASE13Q5GAN3 156 aaKnown RBP11.78□□□□□ -0.52
HOXD11-202ENST00000498438 CSDC2Q9Y534 153 aaKnown RBP11.78□□□□□ -0.52
HOXD11-202ENST00000498438 PPBPP02775 128 aa11.77□□□□□ -0.53
HOXD11-202ENST00000498438 MT-ND4LP03901 98 aa11.77□□□□□ -0.53
HOXD11-202ENST00000498438 TMEM18Q96B42 140 aa11.77□□□□□ -0.53
HOXD11-202ENST00000498438 ANAPC16Q96DE5 110 aa11.77□□□□□ -0.53
HOXD11-202ENST00000498438 PHOX2AO14813 284 aa11.76□□□□□ -0.53
HOXD11-202ENST00000498438 TCAPO15273 167 aa11.76□□□□□ -0.53
HOXD11-202ENST00000498438 KRTAP10-4P60372 401 aaPredicted RBP11.76□□□□□ -0.53
HOXD11-202ENST00000498438 CIRBPQ14011 172 aaKnown RBP11.76□□□□□ -0.53
HOXD11-202ENST00000498438 CD164L2Q6UWJ8 174 aa11.76□□□□□ -0.53
HOXD11-202ENST00000498438 Q6ZUT4 128 aa11.76□□□□□ -0.53
HOXD11-202ENST00000498438 CHTF8P0CG12 524 aa11.75□□□□□ -0.53
HOXD11-202ENST00000498438 RPL39P62891 51 aaKnown RBP11.75□□□□□ -0.53
HOXD11-202ENST00000498438 IFITM2Q01629 132 aa11.75□□□□□ -0.53
HOXD11-202ENST00000498438 ORMDL3Q8N138 153 aa11.75□□□□□ -0.53
HOXD11-202ENST00000498438 TIMM21Q9BVV7 248 aa11.75□□□□□ -0.53
HOXD11-202ENST00000498438 HERC1Q15751 4861 aa11.75□□□□□ -0.53
HOXD11-202ENST00000498438 IGHV1-58A0A0C4DH39 117 aa11.74□□□□□ -0.53
HOXD11-202ENST00000498438 TMEM136Q6ZRR5 245 aa11.74□□□□□ -0.53
HOXD11-202ENST00000498438 PRELID3AQ96N28 172 aa11.74□□□□□ -0.53
HOXD11-202ENST00000498438 TRAV13-1A0A0B4J241 112 aa11.73□□□□□ -0.53
HOXD11-202ENST00000498438 C1orf196B1AJZ1 125 aa11.73□□□□□ -0.53
HOXD11-202ENST00000498438 LINC00526Q96FQ7 95 aa11.73□□□□□ -0.53
HOXD11-202ENST00000498438 ADCYAP1P18509 176 aa11.72□□□□□ -0.53
HOXD11-202ENST00000498438 COX6A2Q02221 97 aa11.72□□□□□ -0.53
HOXD11-202ENST00000498438 SPACA4Q8TDM5 124 aa11.72□□□□□ -0.53
HOXD11-202ENST00000498438 RPL37AP61513 92 aaKnown RBP11.71□□□□□ -0.53
HOXD11-202ENST00000498438 UQCC3Q6UW78 93 aa11.71□□□□□ -0.53
HOXD11-202ENST00000498438 PRSS3P2Q8NHM4 247 aa11.7□□□□□ -0.54
HOXD11-202ENST00000498438 FAM104AQ969W3 186 aa11.7□□□□□ -0.54
HOXD11-202ENST00000498438 DPH3Q96FX2 82 aa11.7□□□□□ -0.54
HOXD11-202ENST00000498438 SPANXA1Q9NS26 97 aa11.7□□□□□ -0.54
HOXD11-202ENST00000498438 A0A087WYN8 130 aa11.69□□□□□ -0.54
HOXD11-202ENST00000498438 COX7A2LO14548 114 aa11.69□□□□□ -0.54
HOXD11-202ENST00000498438 MALP21145 153 aa11.69□□□□□ -0.54
HOXD11-202ENST00000498438 PKHD1L1Q86WI1 4243 aa11.69□□□□□ -0.54
HOXD11-202ENST00000498438 IGKV2-24A0A0C4DH68 120 aa11.68□□□□□ -0.54
HOXD11-202ENST00000498438 TMEM218A2RU14 115 aa11.68□□□□□ -0.54
HOXD11-202ENST00000498438 ZNF561-AS1K7EIQ3 104 aa11.68□□□□□ -0.54
HOXD11-202ENST00000498438 RAB5AP20339 215 aa11.68□□□□□ -0.54
HOXD11-202ENST00000498438 CARD19Q96LW7 228 aa11.68□□□□□ -0.54
HOXD11-202ENST00000498438 OPRPNQ99935 248 aaPredicted RBP11.68□□□□□ -0.54
HOXD11-202ENST00000498438 LAMTOR2Q9Y2Q5 125 aa11.68□□□□□ -0.54
HOXD11-202ENST00000498438 LOC389332A0A1B0GUA5 103 aa11.67□□□□□ -0.54
HOXD11-202ENST00000498438 MRPS36P82909 103 aaKnown RBP11.67□□□□□ -0.54
HOXD11-202ENST00000498438 MAP1LC3AQ9H492 121 aa11.67□□□□□ -0.54
HOXD11-202ENST00000498438 PRSS47A8MTI9 375 aa11.66□□□□□ -0.54
HOXD11-202ENST00000498438 MAJINQ3KP22 176 aa11.66□□□□□ -0.54
HOXD11-202ENST00000498438 C5orf38Q86SI9 138 aa11.66□□□□□ -0.54
HOXD11-202ENST00000498438 IMMP2LQ96T52 175 aa11.66□□□□□ -0.54
HOXD11-202ENST00000498438 PLAC8Q9NZF1 115 aa11.66□□□□□ -0.54
HOXD11-202ENST00000498438 A0A096LNI7 61 aa11.65□□□□□ -0.54
HOXD11-202ENST00000498438 J3QL48 77 aa11.65□□□□□ -0.54
HOXD11-202ENST00000498438 SYCNQ0VAF6 134 aa11.65□□□□□ -0.54
HOXD11-202ENST00000498438 IGLV4-69A0A075B6H9 119 aa11.64□□□□□ -0.55
HOXD11-202ENST00000498438 IFITM10A6NMD0 228 aa11.64□□□□□ -0.55
HOXD11-202ENST00000498438 COMMD7Q86VX2 200 aa11.64□□□□□ -0.55
HOXD11-202ENST00000498438 CTDSP1Q9GZU7 261 aa11.64□□□□□ -0.55
HOXD11-202ENST00000498438 LRP1Q07954 4544 aaKnown RBP11.63□□□□□ -0.55
HOXD11-202ENST00000498438 KRTAP29-1A8MX34 341 aaPredicted RBP11.63□□□□□ -0.55
HOXD11-202ENST00000498438 IFI27P40305 119 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms