RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 ZFHX3Q15911 3703 aa-0.66□□□□□ -2.52
SMC4-223ENST00000493695 KIF21AQ7Z4S6 1674 aa-0.66□□□□□ -2.52
SMC4-223ENST00000493695 RIMS1Q86UR5 1692 aaKnown RBP-0.66□□□□□ -2.52
SMC4-223ENST00000493695 FOCADQ5VW36 1801 aa-0.66□□□□□ -2.52
SMC4-223ENST00000493695 SPTBN1Q01082 2364 aaKnown RBP-0.67□□□□□ -2.52
SMC4-223ENST00000493695 PAPPAQ13219 1627 aa-0.67□□□□□ -2.52
SMC4-223ENST00000493695 CTXND1A0A1B0GTU2 59 aa-0.67□□□□□ -2.52
SMC4-223ENST00000493695 SELENOWP63302 87 aa-0.67□□□□□ -2.52
SMC4-223ENST00000493695 TTC9CQ8N5M4 171 aa-0.67□□□□□ -2.52
SMC4-223ENST00000493695 V9GYH0 126 aa-0.67□□□□□ -2.52
SMC4-223ENST00000493695 MAP1AP78559 2803 aaPredicted RBP-0.67□□□□□ -2.52
SMC4-223ENST00000493695 SBF2Q86WG5 1849 aa-0.68□□□□□ -2.52
SMC4-223ENST00000493695 BTG2P78543 158 aa-0.68□□□□□ -2.52
SMC4-223ENST00000493695 COX17Q14061 63 aa-0.68□□□□□ -2.52
SMC4-223ENST00000493695 LINC00470Q9BZP3 86 aa-0.68□□□□□ -2.52
SMC4-223ENST00000493695 NDUFA4L2Q9NRX3 87 aa-0.68□□□□□ -2.52
SMC4-223ENST00000493695 SETXQ7Z333 2677 aaKnown RBP-0.68□□□□□ -2.52
SMC4-223ENST00000493695 USF3Q68DE3 2245 aa-0.68□□□□□ -2.52
SMC4-223ENST00000493695 PI4KAP42356 2102 aa-0.68□□□□□ -2.52
SMC4-223ENST00000493695 SRRM2Q9UQ35 2752 aaKnown RBP-0.68□□□□□ -2.52
SMC4-223ENST00000493695 SHROOM2Q13796 1616 aa-0.69□□□□□ -2.52
SMC4-223ENST00000493695 MBD5Q9P267 1494 aa-0.69□□□□□ -2.52
SMC4-223ENST00000493695 PRKDCP78527 4128 aaKnown RBP-0.7□□□□□ -2.52
SMC4-223ENST00000493695 NDUFA2O43678 99 aa-0.7□□□□□ -2.52
SMC4-223ENST00000493695 S100A3P33764 101 aa-0.7□□□□□ -2.52
SMC4-223ENST00000493695 ARL11Q969Q4 196 aa-0.71□□□□□ -2.52
SMC4-223ENST00000493695 NAA60Q9H7X0 242 aa-0.71□□□□□ -2.52
SMC4-223ENST00000493695 PDZD2O15018 2839 aa-0.71□□□□□ -2.52
SMC4-223ENST00000493695 MYO7BQ6PIF6 2116 aa-0.71□□□□□ -2.52
SMC4-223ENST00000493695 TRBV6-1A0A0K0K1D8 114 aa-0.72□□□□□ -2.52
SMC4-223ENST00000493695 UQCR11O14957 56 aa-0.72□□□□□ -2.52
SMC4-223ENST00000493695 DCDP81605 110 aaKnown RBP-0.72□□□□□ -2.52
SMC4-223ENST00000493695 MEIG1Q5JSS6 88 aa-0.72□□□□□ -2.52
SMC4-223ENST00000493695 TMEM170BQ5T4T1 132 aa-0.72□□□□□ -2.52
SMC4-223ENST00000493695 MYOM1P52179 1685 aa-0.72□□□□□ -2.53
SMC4-223ENST00000493695 CPSF1Q10570 1443 aaKnown RBP-0.72□□□□□ -2.53
SMC4-223ENST00000493695 TRBV7-3A0A075B6L6 115 aa-0.73□□□□□ -2.53
SMC4-223ENST00000493695 F8VRH5 84 aa-0.73□□□□□ -2.53
SMC4-223ENST00000493695 Q6JHZ5 121 aa-0.73□□□□□ -2.53
SMC4-223ENST00000493695 BAGE2Q86Y30 109 aa-0.73□□□□□ -2.53
SMC4-223ENST00000493695 MGST2Q99735 147 aa-0.73□□□□□ -2.53
SMC4-223ENST00000493695 LINC01558Q9Y6Z2 57 aa-0.73□□□□□ -2.53
SMC4-223ENST00000493695 QRICH2Q9H0J4 1663 aa-0.73□□□□□ -2.53
SMC4-223ENST00000493695 MAP1BP46821 2468 aaKnown RBP-0.73□□□□□ -2.53
SMC4-223ENST00000493695 TPPP2P59282 170 aa-0.74□□□□□ -2.53
SMC4-223ENST00000493695 SPANXDQ9BXN6 97 aa-0.74□□□□□ -2.53
SMC4-223ENST00000493695 DYNLRB1Q9NP97 96 aa-0.74□□□□□ -2.53
SMC4-223ENST00000493695 RAPGEF6Q8TEU7 1601 aa-0.75□□□□□ -2.53
SMC4-223ENST00000493695 CSPG4Q6UVK1 2322 aa-0.75□□□□□ -2.53
SMC4-223ENST00000493695 SPTA1P02549 2419 aa-0.75□□□□□ -2.53
SMC4-223ENST00000493695 GNG7O60262 68 aa-0.75□□□□□ -2.53
SMC4-223ENST00000493695 SPRR2BP35325 72 aa-0.75□□□□□ -2.53
SMC4-223ENST00000493695 PIGYQ3MUY2 71 aa-0.75□□□□□ -2.53
SMC4-223ENST00000493695 Q56UQ5 140 aa-0.75□□□□□ -2.53
SMC4-223ENST00000493695 DEFB123Q8N688 67 aa-0.75□□□□□ -2.53
SMC4-223ENST00000493695 PPP3R2Q96LZ3 170 aa-0.75□□□□□ -2.53
SMC4-223ENST00000493695 IGLC7A0M8Q6 106 aa-0.76□□□□□ -2.53
SMC4-223ENST00000493695 HMGN4O00479 90 aa-0.76□□□□□ -2.53
SMC4-223ENST00000493695 TSLPQ969D9 159 aa-0.76□□□□□ -2.53
SMC4-223ENST00000493695 ARHGEF5Q12774 1597 aa-0.76□□□□□ -2.53
SMC4-223ENST00000493695 APC2O95996 2303 aa-0.76□□□□□ -2.53
SMC4-223ENST00000493695 MYH7P12883 1935 aa-0.77□□□□□ -2.53
SMC4-223ENST00000493695 LRP1BQ9NZR2 4599 aa-0.77□□□□□ -2.53
SMC4-223ENST00000493695 K7EP13 123 aa-0.77□□□□□ -2.53
SMC4-223ENST00000493695 APOC3P02656 99 aa-0.77□□□□□ -2.53
SMC4-223ENST00000493695 FGF7P21781 194 aa-0.77□□□□□ -2.53
SMC4-223ENST00000493695 S100A12P80511 92 aa-0.77□□□□□ -2.53
SMC4-223ENST00000493695 CCDC58Q4VC31 144 aa-0.77□□□□□ -2.53
SMC4-223ENST00000493695 ZNF436-AS1Q8NC38 126 aaPredicted RBP-0.77□□□□□ -2.53
SMC4-223ENST00000493695 EP300Q09472 2414 aaPredicted RBP-0.77□□□□□ -2.53
SMC4-223ENST00000493695 TSC2P49815 1807 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 MUC12Q9UKN1 5478 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 TULP4Q9NRJ4 1543 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 SHANK2Q9UPX8 1470 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 WDR7Q9Y4E6 1490 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 LOC100130705A0A1B0GUX0 176 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 K7EQZ3 153 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 PSME4Q14997 1843 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 WNK1Q9H4A3 2382 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 ROBO1Q9Y6N7 1651 aa-0.78□□□□□ -2.53
SMC4-223ENST00000493695 FLNBO75369 2602 aaKnown RBP-0.79□□□□□ -2.54
SMC4-223ENST00000493695 NAIPQ13075 1403 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 NSD3Q9BZ95 1437 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 MIF4GDA9UHW6 222 aaKnown RBP-0.79□□□□□ -2.54
SMC4-223ENST00000493695 FAM25AB3EWG3 89 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 FAM25CB3EWG5 89 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 FAM25GB3EWG6 89 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 SSSCA1O60232 199 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 COX6B1P14854 86 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 SPRR1BP22528 89 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 COMMD6Q7Z4G1 85 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 C5orf38Q86SI9 138 aa-0.79□□□□□ -2.54
SMC4-223ENST00000493695 C8orf59Q8N0T1 100 aaPredicted RBP-0.79□□□□□ -2.54
SMC4-223ENST00000493695 A2ML1A8K2U0 1454 aa-0.8□□□□□ -2.54
SMC4-223ENST00000493695 SMG6Q86US8 1419 aaKnown RBP-0.8□□□□□ -2.54
SMC4-223ENST00000493695 FXYD6-FXYD2A0A087WZ82 144 aa-0.8□□□□□ -2.54
SMC4-223ENST00000493695 LOC285095A0A1B0GVY8 99 aa-0.8□□□□□ -2.54
SMC4-223ENST00000493695 KDM5AP29375 1690 aaKnown RBP-0.81□□□□□ -2.54
SMC4-223ENST00000493695 CHD8Q9HCK8 2581 aa-0.81□□□□□ -2.54
SMC4-223ENST00000493695 APOC2P02655 101 aa-0.81□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms