RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ASH1LQ9NR48 2969 aaKnown RBP1.92□□□□□ -2.1
VPS13A-212ENST00000493341 TLN1Q9Y490 2541 aaKnown RBP1.92□□□□□ -2.1
VPS13A-212ENST00000493341 A0A1W2PPB8 328 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 A0A1W2PRS3 328 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 KIR3DP1A8MWS1 328 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 PRB4P10163 310 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-212ENST00000493341 ADCYAP1P18509 176 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 GUCA1AP43080 201 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-212ENST00000493341 DCDP81605 110 aaKnown RBP1.92□□□□□ -2.1
VPS13A-212ENST00000493341 EMX2Q04743 252 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 DEFB109BQ30KR1 87 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 IDO2Q6ZQW0 420 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 LIMD2Q9BT23 127 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 ZFP30Q9Y2G7 519 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 ZNF462Q96JM2 2506 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 LOC400499M0QZD8 3231 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 NCOA6Q14686 2063 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-212ENST00000493341 PIEZO2Q9H5I5 2752 aa1.92□□□□□ -2.1
VPS13A-212ENST00000493341 A0A0G2JMM0 328 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 INE1O15225 51 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 KRTAP12-3P60328 96 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 CCSMST1Q4G0I0 132 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 ATOH7Q8N100 152 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 FASNP49327 2511 aaKnown RBP1.91□□□□□ -2.1
VPS13A-212ENST00000493341 TRAV23DV6A0A075B6W5 121 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 LOC110117498A0A087WWA1 95 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 JMJD7-PLA2G4BH0Y9G9 81 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 H0YGG7 62 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 M0R2P5 195 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 IGHV3-33P01772 117 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 Q6ZS92 163 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 PLPP5Q8NEB5 264 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 ATP6V0E2Q8NHE4 81 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 OBSCN-AS1Q96MR7 158 aa1.91□□□□□ -2.1
VPS13A-212ENST00000493341 SMG1Q96Q15 3661 aaKnown RBP1.9□□□□□ -2.1
VPS13A-212ENST00000493341 IGKV3-7A0A075B6H7 116 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 IGKV2-40A0A087WW87 121 aaPredicted RBP1.9□□□□□ -2.11
VPS13A-212ENST00000493341 M0R2N4 97 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 IGKV2D-40P01614 121 aaPredicted RBP1.9□□□□□ -2.11
VPS13A-212ENST00000493341 S100A1P23297 94 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 DEFB110Q30KQ9 67 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 LINC00322Q6ZN03 302 aaPredicted RBP1.9□□□□□ -2.11
VPS13A-212ENST00000493341 FDCSPQ8NFU4 85 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 SDF2Q99470 211 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 TMEM191AQ9H0A3 160 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 FLNCQ14315 2725 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 HIVEP3Q5T1R4 2406 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 ESPL1Q14674 2120 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 TRAV17A0A0B4J275 112 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 DLEU1O43261 78 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 IL7P13232 177 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 SPCS2Q15005 226 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 IQCJQ1A5X6 159 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 ATP11AUNQ6ZP68 121 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 SLC25A26Q70HW3 274 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 PSMG3Q9BT73 122 aaPredicted RBP1.9□□□□□ -2.11
VPS13A-212ENST00000493341 CYSTM1Q9H1C7 97 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 SAR1AQ9NR31 198 aa1.9□□□□□ -2.11
VPS13A-212ENST00000493341 PTPN13Q12923 2485 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 BOD1L1Q8NFC6 3051 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 ZGRF1Q86YA3 2104 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 LINC00587B1AMM8 73 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 J3QLW9 94 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 IGKCP01834 107 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 PYYP10082 97 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 GNG11P61952 73 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 WHAMMP3Q1A5X7 153 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 GDF5OSQ5U4N7 250 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 MIC13Q5XKP0 118 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 LINC00299Q6ZSB3 139 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 CELSR3Q9NYQ7 3312 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 NINQ8N4C6 2090 aa1.89□□□□□ -2.11
VPS13A-212ENST00000493341 DOPEY2Q9Y3R5 2298 aa1.88□□□□□ -2.11
VPS13A-212ENST00000493341 USP9XQ93008 2570 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-212ENST00000493341 IGLV3-32A0A0A0MS00 114 aa1.88□□□□□ -2.11
VPS13A-212ENST00000493341 CSAG1Q6PB30 78 aa1.88□□□□□ -2.11
VPS13A-212ENST00000493341 Q6ZUT4 128 aa1.88□□□□□ -2.11
VPS13A-212ENST00000493341 TAS2R8Q9NYW2 309 aa1.88□□□□□ -2.11
VPS13A-212ENST00000493341 SETXQ7Z333 2677 aaKnown RBP1.88□□□□□ -2.11
VPS13A-212ENST00000493341 SPTA1P02549 2419 aa1.88□□□□□ -2.11
VPS13A-212ENST00000493341 SPENQ96T58 3664 aaKnown RBP1.88□□□□□ -2.11
VPS13A-212ENST00000493341 DOPEY1Q5JWR5 2465 aa1.88□□□□□ -2.11
VPS13A-212ENST00000493341 USP9YO00507 2555 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-212ENST00000493341 IGKV2-29A2NJV5 120 aaPredicted RBP1.88□□□□□ -2.11
VPS13A-212ENST00000493341 KCNRGQ8N5I3 272 aa1.88□□□□□ -2.11
VPS13A-212ENST00000493341 CCDC167Q9P0B6 97 aa1.88□□□□□ -2.11
VPS13A-212ENST00000493341 CACNA1CQ13936 2221 aa1.87□□□□□ -2.11
VPS13A-212ENST00000493341 IFI6P09912 130 aa1.87□□□□□ -2.11
VPS13A-212ENST00000493341 POLR2JP52435 117 aaKnown RBP1.87□□□□□ -2.11
VPS13A-212ENST00000493341 UNQ5815/PRO19632Q6UWF5 114 aa1.87□□□□□ -2.11
VPS13A-212ENST00000493341 TSLPQ969D9 159 aa1.87□□□□□ -2.11
VPS13A-212ENST00000493341 A0A0J9YY99 117 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 H3BQF6 201 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 PITX3O75364 302 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 BTG2P78543 158 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 RHOHQ15669 191 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 DYNLRB2Q8TF09 96 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 MRPL57Q9BQC6 102 aaKnown RBP1.86□□□□□ -2.11
VPS13A-212ENST00000493341 PDCD10Q9BUL8 212 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 LRRK2Q5S007 2527 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms