RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 C1orf43Q9BWL3 253 aa13.37□□□□□ -0.27
SHROOM3-209ENST00000490690 IGLV4-60A0A075B6I1 120 aa13.36□□□□□ -0.27
SHROOM3-209ENST00000490690 CCL25O15444 150 aa13.36□□□□□ -0.27
SHROOM3-209ENST00000490690 PSCAO43653 123 aa13.36□□□□□ -0.27
SHROOM3-209ENST00000490690 MRPS36P82909 103 aaKnown RBP13.36□□□□□ -0.27
SHROOM3-209ENST00000490690 ZNF664Q8N3J9 261 aa13.36□□□□□ -0.27
SHROOM3-209ENST00000490690 Q8N3U1 123 aa13.36□□□□□ -0.27
SHROOM3-209ENST00000490690 Q9HAA7 133 aa13.36□□□□□ -0.27
SHROOM3-209ENST00000490690 Q6ZN92 141 aa13.35□□□□□ -0.27
SHROOM3-209ENST00000490690 BAGE3Q86Y29 109 aa13.35□□□□□ -0.27
SHROOM3-209ENST00000490690 CDC42SE2Q9NRR3 84 aa13.35□□□□□ -0.27
SHROOM3-209ENST00000490690 RPL39P62891 51 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-209ENST00000490690 TOMM6Q96B49 74 aa13.33□□□□□ -0.28
SHROOM3-209ENST00000490690 IGKV2D-24A0A075B6R9 120 aa13.32□□□□□ -0.28
SHROOM3-209ENST00000490690 ENHOQ6UWT2 76 aa13.32□□□□□ -0.28
SHROOM3-209ENST00000490690 TIMM17AQ99595 171 aa13.32□□□□□ -0.28
SHROOM3-209ENST00000490690 RYR2Q92736 4967 aa13.31□□□□□ -0.28
SHROOM3-209ENST00000490690 EREGO14944 169 aa13.31□□□□□ -0.28
SHROOM3-209ENST00000490690 SS18Q15532 418 aa13.31□□□□□ -0.28
SHROOM3-209ENST00000490690 TMEM141Q96I45 108 aa13.31□□□□□ -0.28
SHROOM3-209ENST00000490690 HBDP02042 147 aa13.3□□□□□ -0.28
SHROOM3-209ENST00000490690 ERASQ7Z444 233 aa13.3□□□□□ -0.28
SHROOM3-209ENST00000490690 C2orf88Q9BSF0 95 aa13.3□□□□□ -0.28
SHROOM3-209ENST00000490690 HSBP1O75506 76 aa13.29□□□□□ -0.28
SHROOM3-209ENST00000490690 CLPSL2Q6UWE3 100 aa13.29□□□□□ -0.28
SHROOM3-209ENST00000490690 C1orf196B1AJZ1 125 aa13.28□□□□□ -0.28
SHROOM3-209ENST00000490690 RTL8CO15255 209 aa13.28□□□□□ -0.28
SHROOM3-209ENST00000490690 TEX43Q6ZNM6 134 aa13.28□□□□□ -0.28
SHROOM3-209ENST00000490690 Q6ZRN7 208 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-209ENST00000490690 SCGB3A1Q96QR1 104 aa13.28□□□□□ -0.28
SHROOM3-209ENST00000490690 Q6ZUT4 128 aa13.27□□□□□ -0.29
SHROOM3-209ENST00000490690 VCX2Q9H322 139 aa13.27□□□□□ -0.29
SHROOM3-209ENST00000490690 IGLV4-3A0A075B6K6 122 aa13.26□□□□□ -0.29
SHROOM3-209ENST00000490690 IGKV3OR2-268A0A0C4DH90 116 aa13.26□□□□□ -0.29
SHROOM3-209ENST00000490690 PRSS29PA6NIE9 313 aa13.26□□□□□ -0.29
SHROOM3-209ENST00000490690 IGIPA6NJ69 53 aa13.26□□□□□ -0.29
SHROOM3-209ENST00000490690 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.26□□□□□ -0.29
SHROOM3-209ENST00000490690 HYDINQ4G0P3 5121 aa13.25□□□□□ -0.29
SHROOM3-209ENST00000490690 LINC00959A0A1B0GUT2 108 aa13.25□□□□□ -0.29
SHROOM3-209ENST00000490690 ATP5LO75964 103 aa13.25□□□□□ -0.29
SHROOM3-209ENST00000490690 URB1-AS1Q96HZ7 61 aa13.25□□□□□ -0.29
SHROOM3-209ENST00000490690 IFITM10A6NMD0 228 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST1H2BKO60814 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST1H2BJP06899 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST1H2BOP23527 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST1H2BBP33778 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST1H2BDP58876 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST1H2BCP62807 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 SEC11AP67812 179 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST2H2BEQ16778 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 C14orf177Q52M58 125 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST1H2BHQ93079 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST1H2BNQ99877 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 HIST1H2BMQ99879 126 aa13.24□□□□□ -0.29
SHROOM3-209ENST00000490690 CHCHD10Q8WYQ3 142 aaPredicted RBP13.23□□□□□ -0.29
SHROOM3-209ENST00000490690 IGLV10-54A0A075B6I4 117 aa13.22□□□□□ -0.29
SHROOM3-209ENST00000490690 TRAV13-1A0A0B4J241 112 aa13.22□□□□□ -0.29
SHROOM3-209ENST00000490690 CFAP161Q6P656 301 aa13.22□□□□□ -0.29
SHROOM3-209ENST00000490690 CD164L2Q6UWJ8 174 aa13.22□□□□□ -0.29
SHROOM3-209ENST00000490690 SERF1AO75920 110 aa13.21□□□□□ -0.29
SHROOM3-209ENST00000490690 AMELXQ99217 191 aa13.21□□□□□ -0.29
SHROOM3-209ENST00000490690 PDZD11Q5EBL8 140 aa13.2□□□□□ -0.3
SHROOM3-209ENST00000490690 RNASE13Q5GAN3 156 aaKnown RBP13.2□□□□□ -0.3
SHROOM3-209ENST00000490690 A0A096LNJ9 63 aa13.19□□□□□ -0.3
SHROOM3-209ENST00000490690 OPRPNQ99935 248 aaPredicted RBP13.19□□□□□ -0.3
SHROOM3-209ENST00000490690 RYR3Q15413 4870 aa13.18□□□□□ -0.3
SHROOM3-209ENST00000490690 A0A087WTM6 91 aa13.18□□□□□ -0.3
SHROOM3-209ENST00000490690 GAGE12HA6NDE8 117 aa13.18□□□□□ -0.3
SHROOM3-209ENST00000490690 XCL1P47992 114 aa13.18□□□□□ -0.3
SHROOM3-209ENST00000490690 TNP2Q05952 138 aa13.18□□□□□ -0.3
SHROOM3-209ENST00000490690 PMVKQ15126 192 aa13.18□□□□□ -0.3
SHROOM3-209ENST00000490690 HSPB8Q9UJY1 196 aa13.18□□□□□ -0.3
SHROOM3-209ENST00000490690 PMCHL1Q16048 86 aa13.17□□□□□ -0.3
SHROOM3-209ENST00000490690 KRTAP26-1Q6PEX3 210 aa13.17□□□□□ -0.3
SHROOM3-209ENST00000490690 FAM104AQ969W3 186 aa13.17□□□□□ -0.3
SHROOM3-209ENST00000490690 PACRGQ96M98 296 aaPredicted RBP13.17□□□□□ -0.3
SHROOM3-209ENST00000490690 LEPROTL1O95214 131 aa13.16□□□□□ -0.3
SHROOM3-209ENST00000490690 HERVK_113P63121 156 aa13.16□□□□□ -0.3
SHROOM3-209ENST00000490690 COA6Q5JTJ3 125 aaKnown RBP13.16□□□□□ -0.3
SHROOM3-209ENST00000490690 NTN5Q8WTR8 489 aaPredicted RBP13.16□□□□□ -0.3
SHROOM3-209ENST00000490690 DNAH2Q9P225 4427 aa13.15□□□□□ -0.3
SHROOM3-209ENST00000490690 LRCOL1A6NCL2 159 aa13.15□□□□□ -0.3
SHROOM3-209ENST00000490690 COX7A2LO14548 114 aa13.15□□□□□ -0.3
SHROOM3-209ENST00000490690 APOMO95445 188 aa13.15□□□□□ -0.3
SHROOM3-209ENST00000490690 UBE2D1P51668 147 aa13.15□□□□□ -0.3
SHROOM3-209ENST00000490690 FAM19A3Q7Z5A8 133 aa13.15□□□□□ -0.3
SHROOM3-209ENST00000490690 BAALCQ8WXS3 180 aa13.15□□□□□ -0.3
SHROOM3-209ENST00000490690 MALP21145 153 aa13.14□□□□□ -0.31
SHROOM3-209ENST00000490690 FOXI1Q12951 378 aa13.14□□□□□ -0.31
SHROOM3-209ENST00000490690 CDPF1Q6NVV7 123 aa13.14□□□□□ -0.31
SHROOM3-209ENST00000490690 IFI27L1Q96BM0 104 aa13.14□□□□□ -0.31
SHROOM3-209ENST00000490690 PRSS1P07477 247 aa13.13□□□□□ -0.31
SHROOM3-209ENST00000490690 LINC00173Q6ZV60 143 aa13.13□□□□□ -0.31
SHROOM3-209ENST00000490690 FAM19A2Q8N3H0 131 aa13.13□□□□□ -0.31
SHROOM3-209ENST00000490690 Q8N814 137 aa13.13□□□□□ -0.31
SHROOM3-209ENST00000490690 CST9LQ9H4G1 147 aa13.13□□□□□ -0.31
SHROOM3-209ENST00000490690 GEMIN7Q9H840 131 aaKnown RBP13.13□□□□□ -0.31
SHROOM3-209ENST00000490690 PGPEP1Q9NXJ5 209 aa13.13□□□□□ -0.31
SHROOM3-209ENST00000490690 IGHV1-58A0A0C4DH39 117 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms