RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 SEC16AO15027 2179 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 XAGE1AQ9HD64 81 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 IGLV2-18A0A075B6J9 118 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 IGKV2-28A0A075B6P5 120 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 IGKV2D-28P01615 120 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 EXPH5Q8NEV8 1989 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 IBA57-AS1B1ANH7 110 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 SMCR5Q8TEV8 140 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 DCANP1Q8TF63 244 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 FAM30AQ9NZY2 134 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 CEP250Q9BV73 2442 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 K7EIM0 57 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 IGLV2-11P01706 119 aa5.42□□□□□ -1.54
SYNE1-228ENST00000490135 GAS8-AS1O95177 125 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 BRWD1-AS2P59051 145 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 EIF4EBP1Q13541 118 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-228ENST00000490135 VWA8A3KMH1 1905 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 CEP350Q5VT06 3117 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 A0A0J9YX75 114 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 ZNF80P51504 273 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-228ENST00000490135 C10orf25Q5T742 122 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 PRAC2D3DTV9 90 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 FAM215AQ9Y5M1 114 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 NUP210Q8TEM1 1887 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-228ENST00000490135 NACAE9PAV3 2078 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 NUPR2A6NF83 97 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 M0R378 163 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 NRACQ8N912 160 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 LINC00308Q8TCZ7 52 aa5.41□□□□□ -1.54
SYNE1-228ENST00000490135 POLEQ07864 2286 aa5.4□□□□□ -1.54
SYNE1-228ENST00000490135 DNAJC9-AS1A6NH13 148 aa5.4□□□□□ -1.54
SYNE1-228ENST00000490135 TSPEAR-AS2P59090 65 aa5.4□□□□□ -1.54
SYNE1-228ENST00000490135 SPINK1P00995 79 aa5.4□□□□□ -1.54
SYNE1-228ENST00000490135 CDSNQ15517 529 aa5.4□□□□□ -1.55
SYNE1-228ENST00000490135 C6orf99Q4VX62 202 aa5.4□□□□□ -1.55
SYNE1-228ENST00000490135 Q6ZSV7 163 aa5.4□□□□□ -1.55
SYNE1-228ENST00000490135 Q6ZTI0 123 aa5.4□□□□□ -1.55
SYNE1-228ENST00000490135 A6NDX4 124 aa5.4□□□□□ -1.55
SYNE1-228ENST00000490135 H3BS24 57 aa5.4□□□□□ -1.55
SYNE1-228ENST00000490135 PRR15Q8IV56 129 aa5.4□□□□□ -1.55
SYNE1-228ENST00000490135 CADP27708 2225 aa5.39□□□□□ -1.55
SYNE1-228ENST00000490135 TMEM131Q92545 1883 aa5.39□□□□□ -1.55
SYNE1-228ENST00000490135 IGLV4-69A0A075B6H9 119 aa5.39□□□□□ -1.55
SYNE1-228ENST00000490135 GRNP28799 593 aaKnown RBP5.39□□□□□ -1.55
SYNE1-228ENST00000490135 RPL28P46779 137 aaKnown RBP5.39□□□□□ -1.55
SYNE1-228ENST00000490135 ABCA7Q8IZY2 2146 aa5.39□□□□□ -1.55
SYNE1-228ENST00000490135 CIRBP-AS1Q8TBR5 109 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 LINC00846Q9NV44 126 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 TANC2Q9HCD6 1990 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 LINC01546A6NGU7 62 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 BEAN1Q3B7T3 259 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 Q8N6K4 173 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 ZNF503-AS2A6NEH8 195 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 KTN1-AS1Q86SY8 53 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 ZNF843Q8N446 348 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 RETNLBQ9BQ08 111 aa5.38□□□□□ -1.55
SYNE1-228ENST00000490135 LINC00467Q9BRT7 94 aa5.37□□□□□ -1.55
SYNE1-228ENST00000490135 Q6ZQY7 126 aa5.37□□□□□ -1.55
SYNE1-228ENST00000490135 RPL37AP8A6NKH3 93 aa5.37□□□□□ -1.55
SYNE1-228ENST00000490135 CXCL6P80162 114 aa5.37□□□□□ -1.55
SYNE1-228ENST00000490135 LINC00482Q8N8I6 264 aa5.37□□□□□ -1.55
SYNE1-228ENST00000490135 DEFB1P60022 68 aa5.37□□□□□ -1.55
SYNE1-228ENST00000490135 RITA1Q96K30 269 aa5.37□□□□□ -1.55
SYNE1-228ENST00000490135 FAM186AA6NE01 2351 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 SPTBN2O15020 2390 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 SCN10AQ9Y5Y9 1956 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 KIAA2026Q5HYC2 2103 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 TRBV6-8A0A0A6YYG3 113 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 IGHV6-1A0A0B4J1U7 121 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 DYSFO75923 2080 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 TRBV6-5A0A0K0K1A5 114 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 DAZAP2Q15038 168 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-228ENST00000490135 LINC00208Q96KT6 92 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 PI4KAP42356 2102 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 NANOS2P60321 138 aaKnown RBP5.36□□□□□ -1.55
SYNE1-228ENST00000490135 CDKN2A-AS1Q9UH64 79 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 ATG2AQ2TAZ0 1938 aa5.36□□□□□ -1.55
SYNE1-228ENST00000490135 LOC100131303A0A0U1RQF7 123 aa5.35□□□□□ -1.55
SYNE1-228ENST00000490135 TMEM254Q8TBM7 123 aa5.35□□□□□ -1.55
SYNE1-228ENST00000490135 C22orf34Q6ZV56 151 aa5.35□□□□□ -1.55
SYNE1-228ENST00000490135 MDFIQ99750 246 aa5.35□□□□□ -1.55
SYNE1-228ENST00000490135 KIAA1549LQ6ZVL6 1849 aa5.35□□□□□ -1.55
SYNE1-228ENST00000490135 IGF1P05019 195 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 GTF3C1Q12789 2109 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 E7EUB6 86 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.34□□□□□ -1.55
SYNE1-228ENST00000490135 UNQ9165/PRO28630Q6UXU0 137 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 LINC00337Q8N6G1 96 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 CELA1Q9UNI1 258 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 A0A087WYN8 130 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 TRBV6-4A0A1B0GX49 114 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 BCE1O60756 84 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 SDK2Q58EX2 2172 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 CD164L2Q6UWJ8 174 aa5.34□□□□□ -1.55
SYNE1-228ENST00000490135 THADAQ6YHU6 1953 aa5.33□□□□□ -1.56
SYNE1-228ENST00000490135 IGLV4-3A0A075B6K6 122 aa5.33□□□□□ -1.56
SYNE1-228ENST00000490135 ZNF73O43830 326 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-228ENST00000490135 TRBV10-3A0A0K0K1G6 114 aa5.33□□□□□ -1.56
SYNE1-228ENST00000490135 ADAMTSL4-AS1Q5T5F5 129 aa5.33□□□□□ -1.56
SYNE1-228ENST00000490135 KPRPQ5T749 579 aaPredicted RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms