RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 TRBV6-8A0A0A6YYG3 113 aa11.08□□□□□ -0.64
SYNE1-227ENST00000489156 HTN3P15516 51 aa11.08□□□□□ -0.64
SYNE1-227ENST00000489156 MRPS36P82909 103 aaKnown RBP11.08□□□□□ -0.64
SYNE1-227ENST00000489156 VSIG2Q96IQ7 327 aa11.08□□□□□ -0.64
SYNE1-227ENST00000489156 AMELXQ99217 191 aa11.08□□□□□ -0.64
SYNE1-227ENST00000489156 TMEM243Q9BU79 118 aa11.08□□□□□ -0.64
SYNE1-227ENST00000489156 UQCR10Q9UDW1 63 aa11.08□□□□□ -0.64
SYNE1-227ENST00000489156 F5H768 121 aa11.08□□□□□ -0.64
SYNE1-227ENST00000489156 STPG4Q8N801 248 aa11.08□□□□□ -0.64
SYNE1-227ENST00000489156 FAM104AQ969W3 186 aa11.08□□□□□ -0.64
SYNE1-227ENST00000489156 OPRPNQ99935 248 aaPredicted RBP11.08□□□□□ -0.64
SYNE1-227ENST00000489156 TRAV26-1A0A087WT03 109 aa11.07□□□□□ -0.64
SYNE1-227ENST00000489156 ZC2HC1BQ5TFG8 222 aa11.06□□□□□ -0.64
SYNE1-227ENST00000489156 DGAT2L7PQ6IED9 249 aa11.06□□□□□ -0.64
SYNE1-227ENST00000489156 SH2D6Q7Z4S9 175 aa11.06□□□□□ -0.64
SYNE1-227ENST00000489156 IGLV4-69A0A075B6H9 119 aa11.06□□□□□ -0.64
SYNE1-227ENST00000489156 UBE2L6O14933 153 aa11.06□□□□□ -0.64
SYNE1-227ENST00000489156 CEMP1Q6PRD7 247 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-227ENST00000489156 C14orf144Q96I85 54 aa11.06□□□□□ -0.64
SYNE1-227ENST00000489156 WWC2-AS2Q96NR7 200 aa11.06□□□□□ -0.64
SYNE1-227ENST00000489156 DNAH7Q8WXX0 4024 aa11.05□□□□□ -0.64
SYNE1-227ENST00000489156 DEFB131BA0A096LNP1 70 aa11.05□□□□□ -0.64
SYNE1-227ENST00000489156 LINC00587B1AMM8 73 aa11.05□□□□□ -0.64
SYNE1-227ENST00000489156 H3BNG1 76 aa11.05□□□□□ -0.64
SYNE1-227ENST00000489156 FGF6P10767 208 aa11.05□□□□□ -0.64
SYNE1-227ENST00000489156 MRPL23Q16540 153 aaKnown RBP11.05□□□□□ -0.64
SYNE1-227ENST00000489156 ANKRD39Q53RE8 183 aa11.05□□□□□ -0.64
SYNE1-227ENST00000489156 A0A0J9YY99 117 aa11.04□□□□□ -0.64
SYNE1-227ENST00000489156 ZNF25P17030 456 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-227ENST00000489156 NFE4Q86UQ8 179 aa11.04□□□□□ -0.64
SYNE1-227ENST00000489156 TRAV10A0A0B4J240 114 aa11.04□□□□□ -0.64
SYNE1-227ENST00000489156 COX8AP10176 69 aa11.04□□□□□ -0.64
SYNE1-227ENST00000489156 C2orf88Q9BSF0 95 aa11.04□□□□□ -0.64
SYNE1-227ENST00000489156 SLC25A34Q6PIV7 304 aa11.03□□□□□ -0.64
SYNE1-227ENST00000489156 CSMD3Q7Z407 3707 aa11.03□□□□□ -0.64
SYNE1-227ENST00000489156 C11orf86A6NJI1 115 aa11.02□□□□□ -0.64
SYNE1-227ENST00000489156 AMMECR1LQ6DCA0 310 aa11.02□□□□□ -0.64
SYNE1-227ENST00000489156 Q6ZUT4 128 aa11.02□□□□□ -0.64
SYNE1-227ENST00000489156 TMEM101Q96IK0 257 aa11.02□□□□□ -0.64
SYNE1-227ENST00000489156 ICOSQ9Y6W8 199 aa11.02□□□□□ -0.64
SYNE1-227ENST00000489156 OR5A1Q8NGJ0 315 aa11.02□□□□□ -0.65
SYNE1-227ENST00000489156 CDC42SE2Q9NRR3 84 aa11.02□□□□□ -0.65
SYNE1-227ENST00000489156 MUC7Q8TAX7 377 aa11.01□□□□□ -0.65
SYNE1-227ENST00000489156 CHCHD5Q9BSY4 110 aa11.01□□□□□ -0.65
SYNE1-227ENST00000489156 DLEU1O43261 78 aa11□□□□□ -0.65
SYNE1-227ENST00000489156 ZFAND6Q6FIF0 208 aa11□□□□□ -0.65
SYNE1-227ENST00000489156 CHAC1Q9BUX1 264 aa11□□□□□ -0.65
SYNE1-227ENST00000489156 TINCRA0A1B0GVN0 87 aa10.99□□□□□ -0.65
SYNE1-227ENST00000489156 E9PLD3 99 aa10.99□□□□□ -0.65
SYNE1-227ENST00000489156 NMUP48645 174 aa10.99□□□□□ -0.65
SYNE1-227ENST00000489156 HERVK_113P61574 105 aa10.99□□□□□ -0.65
SYNE1-227ENST00000489156 BOD1L2Q8IYS8 172 aa10.99□□□□□ -0.65
SYNE1-227ENST00000489156 A0A096LPF7 62 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 A0A0J9YXV3 536 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 A0A1B0GUV1 79 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 UBE2D1P51668 147 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 HNRNPA3P51991 378 aaKnown RBP10.98□□□□□ -0.65
SYNE1-227ENST00000489156 RNASE13Q5GAN3 156 aaKnown RBP10.98□□□□□ -0.65
SYNE1-227ENST00000489156 TMEM170BQ5T4T1 132 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 MRPS16Q9Y3D3 137 aaKnown RBP10.98□□□□□ -0.65
SYNE1-227ENST00000489156 IGKV2D-26A0A0A0MRZ7 120 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 IGLL5B9A064 214 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 SEC11AP67812 179 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 GAGE6Q13070 117 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 FAM19A3Q7Z5A8 133 aa10.98□□□□□ -0.65
SYNE1-227ENST00000489156 NUPR2A6NF83 97 aa10.97□□□□□ -0.65
SYNE1-227ENST00000489156 TIRAPP58753 221 aa10.96□□□□□ -0.65
SYNE1-227ENST00000489156 TENM2Q9NT68 2774 aa10.96□□□□□ -0.65
SYNE1-227ENST00000489156 SIVA1O15304 175 aa10.95□□□□□ -0.66
SYNE1-227ENST00000489156 ZNF22P17026 224 aaPredicted RBP10.95□□□□□ -0.66
SYNE1-227ENST00000489156 TCTAP57738 103 aa10.95□□□□□ -0.66
SYNE1-227ENST00000489156 PCP2Q8IVA1 136 aa10.95□□□□□ -0.66
SYNE1-227ENST00000489156 LELP1Q5T871 98 aa10.95□□□□□ -0.66
SYNE1-227ENST00000489156 GEMIN7Q9H840 131 aaKnown RBP10.95□□□□□ -0.66
SYNE1-227ENST00000489156 STARD9Q9P2P6 4700 aa10.95□□□□□ -0.66
SYNE1-227ENST00000489156 TMEM223A0PJW6 202 aa10.94□□□□□ -0.66
SYNE1-227ENST00000489156 HERVK_113P63121 156 aa10.94□□□□□ -0.66
SYNE1-227ENST00000489156 CTAG1AP78358 180 aa10.94□□□□□ -0.66
SYNE1-227ENST00000489156 KLK5Q9Y337 293 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-227ENST00000489156 DYNC2H1Q8NCM8 4307 aaKnown RBP10.94□□□□□ -0.66
SYNE1-227ENST00000489156 IGLV4-60A0A075B6I1 120 aa10.93□□□□□ -0.66
SYNE1-227ENST00000489156 TMEM262E9PQX1 116 aa10.93□□□□□ -0.66
SYNE1-227ENST00000489156 IGLV5-45A0A087WSX0 123 aa10.93□□□□□ -0.66
SYNE1-227ENST00000489156 TRAV8-6A0A0B4J262 113 aa10.93□□□□□ -0.66
SYNE1-227ENST00000489156 LINC00242Q5T6M2 205 aa10.93□□□□□ -0.66
SYNE1-227ENST00000489156 CASC10Q5T4H9 136 aa10.92□□□□□ -0.66
SYNE1-227ENST00000489156 LYPD5Q6UWN5 251 aa10.92□□□□□ -0.66
SYNE1-227ENST00000489156 TRAV13-1A0A0B4J241 112 aa10.91□□□□□ -0.66
SYNE1-227ENST00000489156 RBX1P62877 108 aa10.91□□□□□ -0.66
SYNE1-227ENST00000489156 C3orf84H3BNL1 204 aa10.91□□□□□ -0.66
SYNE1-227ENST00000489156 H3BRM9 83 aa10.91□□□□□ -0.66
SYNE1-227ENST00000489156 M0R143 59 aa10.91□□□□□ -0.66
SYNE1-227ENST00000489156 MPV17L2Q567V2 206 aa10.91□□□□□ -0.66
SYNE1-227ENST00000489156 C2orf91Q6ZV80 131 aa10.91□□□□□ -0.66
SYNE1-227ENST00000489156 LINC00469Q8N7U9 141 aa10.91□□□□□ -0.66
SYNE1-227ENST00000489156 TP73-AS1Q9UF72 201 aa10.91□□□□□ -0.66
SYNE1-227ENST00000489156 LEPROTO15243 131 aa10.9□□□□□ -0.66
SYNE1-227ENST00000489156 C15orf53Q8NAA6 179 aa10.9□□□□□ -0.66
SYNE1-227ENST00000489156 HIGD1BQ9P298 99 aa10.9□□□□□ -0.66
SYNE1-227ENST00000489156 APLNQ9ULZ1 77 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms