RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 KRTAP26-1Q6PEX3 210 aa9.7□□□□□ -0.86
USP4-212ENST00000486549 APOBP04114 4563 aaKnown RBP9.69□□□□□ -0.86
USP4-212ENST00000486549 TRAV9-1A0A075B6T8 112 aa9.69□□□□□ -0.86
USP4-212ENST00000486549 TCAPO15273 167 aa9.69□□□□□ -0.86
USP4-212ENST00000486549 APOC3P02656 99 aa9.69□□□□□ -0.86
USP4-212ENST00000486549 DGAT2L7PQ6IED9 249 aa9.69□□□□□ -0.86
USP4-212ENST00000486549 MRPL52Q86TS9 123 aaKnown RBP9.69□□□□□ -0.86
USP4-212ENST00000486549 Q8N1X5 172 aa9.69□□□□□ -0.86
USP4-212ENST00000486549 LOC389332A0A1B0GUA5 103 aa9.68□□□□□ -0.86
USP4-212ENST00000486549 NDUFA5Q16718 116 aa9.68□□□□□ -0.86
USP4-212ENST00000486549 C14orf177Q52M58 125 aa9.68□□□□□ -0.86
USP4-212ENST00000486549 GAGE12HA6NDE8 117 aa9.67□□□□□ -0.86
USP4-212ENST00000486549 SMAGPQ0VAQ4 97 aa9.67□□□□□ -0.86
USP4-212ENST00000486549 ZNF664Q8N3J9 261 aa9.67□□□□□ -0.86
USP4-212ENST00000486549 CHCHD10Q8WYQ3 142 aaPredicted RBP9.67□□□□□ -0.86
USP4-212ENST00000486549 TMEM18Q96B42 140 aa9.67□□□□□ -0.86
USP4-212ENST00000486549 MAP1LC3AQ9H492 121 aa9.67□□□□□ -0.86
USP4-212ENST00000486549 UBE2D4Q9Y2X8 147 aa9.67□□□□□ -0.86
USP4-212ENST00000486549 RAB5AP20339 215 aa9.66□□□□□ -0.86
USP4-212ENST00000486549 RPL39P62891 51 aaKnown RBP9.66□□□□□ -0.86
USP4-212ENST00000486549 KIAA1644Q3SXP7 199 aa9.66□□□□□ -0.86
USP4-212ENST00000486549 LINC01620Q4KN68 170 aa9.66□□□□□ -0.86
USP4-212ENST00000486549 RNASE13Q5GAN3 156 aaKnown RBP9.66□□□□□ -0.86
USP4-212ENST00000486549 CDC42SE2Q9NRR3 84 aa9.66□□□□□ -0.86
USP4-212ENST00000486549 LAMTOR2Q9Y2Q5 125 aa9.66□□□□□ -0.86
USP4-212ENST00000486549 HSPG2P98160 4391 aa9.66□□□□□ -0.86
USP4-212ENST00000486549 PRSS1P07477 247 aa9.65□□□□□ -0.86
USP4-212ENST00000486549 SVBPQ8N300 66 aa9.65□□□□□ -0.86
USP4-212ENST00000486549 LINC00959A0A1B0GUT2 108 aa9.64□□□□□ -0.87
USP4-212ENST00000486549 SNAPINO95295 136 aa9.64□□□□□ -0.87
USP4-212ENST00000486549 XCL1P47992 114 aa9.64□□□□□ -0.87
USP4-212ENST00000486549 Q6ZUT4 128 aa9.64□□□□□ -0.87
USP4-212ENST00000486549 PCLOQ9Y6V0 5065 aa9.64□□□□□ -0.87
USP4-212ENST00000486549 CCL25O15444 150 aa9.63□□□□□ -0.87
USP4-212ENST00000486549 SS18Q15532 418 aa9.63□□□□□ -0.87
USP4-212ENST00000486549 Q8N8P6 123 aa9.63□□□□□ -0.87
USP4-212ENST00000486549 GNB1LQ9BYB4 327 aa9.63□□□□□ -0.87
USP4-212ENST00000486549 CSDC2Q9Y534 153 aaKnown RBP9.63□□□□□ -0.87
USP4-212ENST00000486549 hDV102S1A0JD36 115 aa9.62□□□□□ -0.87
USP4-212ENST00000486549 PRSS47A8MTI9 375 aa9.62□□□□□ -0.87
USP4-212ENST00000486549 HAMPP81172 84 aa9.62□□□□□ -0.87
USP4-212ENST00000486549 TIMM21Q9BVV7 248 aa9.62□□□□□ -0.87
USP4-212ENST00000486549 TGIF2-C20orf24A0A0A6YYL0 155 aa9.61□□□□□ -0.87
USP4-212ENST00000486549 EPM2AB3EWF7 344 aa9.61□□□□□ -0.87
USP4-212ENST00000486549 FOXI1Q12951 378 aa9.61□□□□□ -0.87
USP4-212ENST00000486549 COX19Q49B96 90 aa9.61□□□□□ -0.87
USP4-212ENST00000486549 OPRPNQ99935 248 aaPredicted RBP9.61□□□□□ -0.87
USP4-212ENST00000486549 TRAV13-1A0A0B4J241 112 aa9.6□□□□□ -0.87
USP4-212ENST00000486549 IFI27P40305 119 aaPredicted RBP9.6□□□□□ -0.87
USP4-212ENST00000486549 XGP55808 180 aa9.6□□□□□ -0.87
USP4-212ENST00000486549 SLC7A5P1Q8MH63 180 aa9.6□□□□□ -0.87
USP4-212ENST00000486549 C15orf56Q8N910 161 aa9.6□□□□□ -0.87
USP4-212ENST00000486549 KRTAP4-5Q9BYR2 181 aa9.6□□□□□ -0.87
USP4-212ENST00000486549 MRPL18Q9H0U6 180 aaKnown RBP9.6□□□□□ -0.87
USP4-212ENST00000486549 SPANXA1Q9NS26 97 aa9.6□□□□□ -0.87
USP4-212ENST00000486549 FAM30AQ9NZY2 134 aa9.6□□□□□ -0.87
USP4-212ENST00000486549 MT-ND6P03923 174 aa9.59□□□□□ -0.87
USP4-212ENST00000486549 FABP9Q0Z7S8 132 aa9.59□□□□□ -0.87
USP4-212ENST00000486549 HIGD2BQ4VC39 106 aa9.59□□□□□ -0.87
USP4-212ENST00000486549 CFAP161Q6P656 301 aa9.59□□□□□ -0.87
USP4-212ENST00000486549 NXT2Q9NPJ8 142 aaKnown RBP9.59□□□□□ -0.87
USP4-212ENST00000486549 AP5S1Q9NUS5 200 aa9.59□□□□□ -0.87
USP4-212ENST00000486549 DNAH8Q96JB1 4490 aa9.58□□□□□ -0.88
USP4-212ENST00000486549 ORMDL2Q53FV1 153 aa9.58□□□□□ -0.88
USP4-212ENST00000486549 C1orf196B1AJZ1 125 aa9.57□□□□□ -0.88
USP4-212ENST00000486549 MRPS36P82909 103 aaKnown RBP9.57□□□□□ -0.88
USP4-212ENST00000486549 CD164L2Q6UWJ8 174 aa9.57□□□□□ -0.88
USP4-212ENST00000486549 C2orf66Q6UXQ4 117 aa9.57□□□□□ -0.88
USP4-212ENST00000486549 FAM104AQ969W3 186 aa9.57□□□□□ -0.88
USP4-212ENST00000486549 ALKBH7Q9BT30 221 aaPredicted RBP9.57□□□□□ -0.88
USP4-212ENST00000486549 CYSLTR1Q9Y271 337 aa9.57□□□□□ -0.88
USP4-212ENST00000486549 IFITM10A6NMD0 228 aa9.56□□□□□ -0.88
USP4-212ENST00000486549 PRSS3P2Q8NHM4 247 aa9.56□□□□□ -0.88
USP4-212ENST00000486549 TRAPPC1Q9Y5R8 145 aa9.56□□□□□ -0.88
USP4-212ENST00000486549 IGLV4-3A0A075B6K6 122 aa9.55□□□□□ -0.88
USP4-212ENST00000486549 K7EMI3 77 aa9.55□□□□□ -0.88
USP4-212ENST00000486549 SMR3BP02814 79 aaPredicted RBP9.55□□□□□ -0.88
USP4-212ENST00000486549 CNBPP62633 177 aaKnown RBP9.55□□□□□ -0.88
USP4-212ENST00000486549 PYGO1Q9Y3Y4 419 aa9.55□□□□□ -0.88
USP4-212ENST00000486549 GVQW2A0A096LPI5 108 aaPredicted RBP9.54□□□□□ -0.88
USP4-212ENST00000486549 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.54□□□□□ -0.88
USP4-212ENST00000486549 IGHV1-58A0A0C4DH39 117 aa9.54□□□□□ -0.88
USP4-212ENST00000486549 FAM229AH3BQW9 127 aa9.54□□□□□ -0.88
USP4-212ENST00000486549 COX7A2LO14548 114 aa9.54□□□□□ -0.88
USP4-212ENST00000486549 SLPIP03973 132 aa9.54□□□□□ -0.88
USP4-212ENST00000486549 MALP21145 153 aa9.54□□□□□ -0.88
USP4-212ENST00000486549 Q6ZSA8 131 aa9.54□□□□□ -0.88
USP4-212ENST00000486549 C9orf163Q8N9P6 203 aa9.54□□□□□ -0.88
USP4-212ENST00000486549 LINC00526Q96FQ7 95 aa9.54□□□□□ -0.88
USP4-212ENST00000486549 TMEM141Q96I45 108 aa9.54□□□□□ -0.88
USP4-212ENST00000486549 C5orf38Q86SI9 138 aa9.53□□□□□ -0.88
USP4-212ENST00000486549 CBLN2Q8IUK8 224 aa9.53□□□□□ -0.88
USP4-212ENST00000486549 ZC2HC1BQ5TFG8 222 aa9.52□□□□□ -0.89
USP4-212ENST00000486549 Q6ZN92 141 aa9.52□□□□□ -0.89
USP4-212ENST00000486549 TEX43Q6ZNM6 134 aa9.52□□□□□ -0.89
USP4-212ENST00000486549 FA2HQ7L5A8 372 aa9.52□□□□□ -0.89
USP4-212ENST00000486549 SMCO4Q9NRQ5 59 aa9.52□□□□□ -0.89
USP4-212ENST00000486549 ABCA13Q86UQ4 5058 aa9.51□□□□□ -0.89
USP4-212ENST00000486549 IGHV3-64A0A075B6Q5 118 aa9.51□□□□□ -0.89
USP4-212ENST00000486549 Q5VSD8 79 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms