RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 MGPP08493 103 aa3.73□□□□□ -1.81
CUX1-208ENST00000485792 KRTAP10-4P60372 401 aaPredicted RBP3.73□□□□□ -1.81
CUX1-208ENST00000485792 RIGQ13278 110 aa3.73□□□□□ -1.81
CUX1-208ENST00000485792 ADIRFQ15847 76 aa3.73□□□□□ -1.81
CUX1-208ENST00000485792 LINC01620Q4KN68 170 aa3.73□□□□□ -1.81
CUX1-208ENST00000485792 UQCC3Q6UW78 93 aa3.73□□□□□ -1.81
CUX1-208ENST00000485792 ATP5L2Q7Z4Y8 100 aa3.73□□□□□ -1.81
CUX1-208ENST00000485792 MRPL52Q86TS9 123 aaKnown RBP3.73□□□□□ -1.81
CUX1-208ENST00000485792 AMN1Q8IY45 258 aa3.73□□□□□ -1.81
CUX1-208ENST00000485792 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.73□□□□□ -1.81
CUX1-208ENST00000485792 TRAV8-4A0A0B4J246 113 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 TMEM218A2RU14 115 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 SMKR1H3BMG3 65 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 PANO1I0J062 215 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 I3L3M4 83 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 LECT2O14960 151 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 PPP1R2P9O14990 202 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 RAB14P61106 215 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 COTL1Q14019 142 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 MRPL51Q4U2R6 128 aaKnown RBP3.72□□□□□ -1.81
CUX1-208ENST00000485792 KCNIP4Q6PIL6 250 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 SMIM15Q7Z3B0 74 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 LINC00269Q8N2A0 174 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 UBE2WQ96B02 151 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 RMI2Q96E14 147 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 IMMP2LQ96T52 175 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 C20orf78Q9BR46 151 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 CHCHD5Q9BSY4 110 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 TMEM243Q9BU79 118 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 Q9HAA7 133 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 CSDC2Q9Y534 153 aaKnown RBP3.72□□□□□ -1.81
CUX1-208ENST00000485792 URGCP-MRPS24S4R325 110 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 HMCN2Q8NDA2 5059 aa3.72□□□□□ -1.81
CUX1-208ENST00000485792 PHOX2AO14813 284 aa3.71□□□□□ -1.82
CUX1-208ENST00000485792 PPP1R17O96001 155 aa3.71□□□□□ -1.82
CUX1-208ENST00000485792 ANGP03950 147 aaKnown RBP3.71□□□□□ -1.82
CUX1-208ENST00000485792 ZNF25P17030 456 aaPredicted RBP3.71□□□□□ -1.82
CUX1-208ENST00000485792 SUMO2P61956 95 aaKnown RBP3.71□□□□□ -1.82
CUX1-208ENST00000485792 REG3AQ06141 175 aa3.71□□□□□ -1.82
CUX1-208ENST00000485792 GAGE6Q13070 117 aa3.71□□□□□ -1.82
CUX1-208ENST00000485792 CLPSL2Q6UWE3 100 aa3.71□□□□□ -1.82
CUX1-208ENST00000485792 BAALCQ8WXS3 180 aa3.71□□□□□ -1.82
CUX1-208ENST00000485792 SEC11CQ9BY50 192 aa3.71□□□□□ -1.82
CUX1-208ENST00000485792 TMEM242Q9NWH2 141 aa3.71□□□□□ -1.82
CUX1-208ENST00000485792 FLG2Q5D862 2391 aaPredicted RBP3.71□□□□□ -1.82
CUX1-208ENST00000485792 IGKV2D-24A0A075B6R9 120 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 TMEM262E9PQX1 116 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 VCYO14598 125 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 PSCAO43653 123 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 PPBPP02775 128 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 FGF6P10767 208 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 HBBP68871 147 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 DGAT2L7PQ6IED9 249 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 C9orf163Q8N9P6 203 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 BORCS7Q96B45 105 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 TIMM21Q9BVV7 248 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 ST20Q9HBF5 79 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 CDC42SE2Q9NRR3 84 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 CARHSP1Q9Y2V2 147 aaKnown RBP3.7□□□□□ -1.82
CUX1-208ENST00000485792 TNXBP22105 4242 aa3.7□□□□□ -1.82
CUX1-208ENST00000485792 TRAV9-1A0A075B6T8 112 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 USP17L23D6RBM5 183 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 TNFRSF6BO95407 300 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 MT-ND4LP03901 98 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 S100A8P05109 93 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 PRSS1P07477 247 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 AMTP48728 403 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 CAMPP49913 170 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 CNBPP62633 177 aaKnown RBP3.69□□□□□ -1.82
CUX1-208ENST00000485792 CIRBPQ14011 172 aaKnown RBP3.69□□□□□ -1.82
CUX1-208ENST00000485792 CTDSP1Q9GZU7 261 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 UBE2D4Q9Y2X8 147 aa3.69□□□□□ -1.82
CUX1-208ENST00000485792 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.68□□□□□ -1.82
CUX1-208ENST00000485792 IGLV5-52A0A0A0MRZ9 124 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 IGKV2-29A2NJV5 120 aaPredicted RBP3.68□□□□□ -1.82
CUX1-208ENST00000485792 LINC01546A6NGU7 62 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 D6R8Y8 96 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 F8W036 122 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 TCAPO15273 167 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 CCL25O15444 150 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 NPYP01303 97 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 APCSP02743 223 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 PMCHP20382 165 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 KRTAP15-1Q3LI76 137 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 C14orf177Q52M58 125 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 MRPL54Q6P161 138 aaKnown RBP3.68□□□□□ -1.82
CUX1-208ENST00000485792 SDIM1Q6ZPB5 146 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 C15orf56Q8N910 161 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 OR5A1Q8NGJ0 315 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 BTF3L4Q96K17 158 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 SMIM2Q9BVW6 85 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 LAMTOR2Q9Y2Q5 125 aa3.68□□□□□ -1.82
CUX1-208ENST00000485792 LINC00959A0A1B0GUT2 108 aa3.67□□□□□ -1.82
CUX1-208ENST00000485792 C7orf77A4D0Y5 90 aa3.67□□□□□ -1.82
CUX1-208ENST00000485792 EPM2AB3EWF7 344 aa3.67□□□□□ -1.82
CUX1-208ENST00000485792 K7EMI3 77 aa3.67□□□□□ -1.82
CUX1-208ENST00000485792 CRPP02741 224 aa3.67□□□□□ -1.82
CUX1-208ENST00000485792 CKS2P33552 79 aa3.67□□□□□ -1.82
CUX1-208ENST00000485792 MRPS36P82909 103 aaKnown RBP3.67□□□□□ -1.82
CUX1-208ENST00000485792 TMEM136Q6ZRR5 245 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 198.1 ms