RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 GAGE4Q13068 117 aa5.8□□□□□ -1.48
USP54-212ENST00000480210 TWIST1Q15672 202 aa5.8□□□□□ -1.48
USP54-212ENST00000480210 APLNQ9ULZ1 77 aa5.8□□□□□ -1.48
USP54-212ENST00000480210 TRBV10-1A0A0K0K1A3 114 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 CRYGDP07320 174 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 P0DMU3 169 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 FAM231AP0DMU4 169 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 FAM231CP0DMU5 169 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 GATA1P15976 413 aaPredicted RBP5.79□□□□□ -1.48
USP54-212ENST00000480210 RHOHQ15669 191 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 IFI27L1Q96BM0 104 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 URB1-AS1Q96HZ7 61 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 TPPP3Q9BW30 176 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 DPH3P1Q9H4G8 78 aa5.79□□□□□ -1.48
USP54-212ENST00000480210 NXT2Q9NPJ8 142 aaKnown RBP5.79□□□□□ -1.48
USP54-212ENST00000480210 A0A1B0GWB2 263 aa5.78□□□□□ -1.48
USP54-212ENST00000480210 H7C1H1 209 aa5.78□□□□□ -1.48
USP54-212ENST00000480210 IGHV3-53P01767 116 aa5.78□□□□□ -1.48
USP54-212ENST00000480210 TTC32Q5I0X7 151 aa5.78□□□□□ -1.48
USP54-212ENST00000480210 ORMDL3Q8N138 153 aa5.78□□□□□ -1.48
USP54-212ENST00000480210 PGLYRP4Q96LB8 373 aa5.78□□□□□ -1.48
USP54-212ENST00000480210 TNFRSF18Q9Y5U5 241 aa5.78□□□□□ -1.48
USP54-212ENST00000480210 ICOSQ9Y6W8 199 aa5.78□□□□□ -1.48
USP54-212ENST00000480210 LINC01546A6NGU7 62 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 K7EMI3 77 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 K7EQD1 137 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 PLNP26678 52 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 CCL18P55774 89 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 Q6ZUT4 128 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 TEN1Q86WV5 123 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 RAB37Q96AX2 223 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 VSIG2Q96IQ7 327 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 DNAJC30Q96LL9 226 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 CHAC1Q9BUX1 264 aa5.77□□□□□ -1.49
USP54-212ENST00000480210 DYNC2H1Q8NCM8 4307 aaKnown RBP5.77□□□□□ -1.49
USP54-212ENST00000480210 A0A0J9YY99 117 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 F5H697 171 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 SNCGO76070 127 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 DPM2O94777 84 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 TIRAPP58753 221 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 RPL36AP83881 106 aaKnown RBP5.76□□□□□ -1.49
USP54-212ENST00000480210 GAGE2BQ13066 116 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 ETDBQ3ZM63 59 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 GAGE2EQ4V326 116 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 FAM74A4Q5TZK3 123 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 C14orf178Q8N769 122 aaPredicted RBP5.76□□□□□ -1.49
USP54-212ENST00000480210 SLC25A29Q8N8R3 303 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 RPL36ALQ969Q0 106 aaKnown RBP5.76□□□□□ -1.49
USP54-212ENST00000480210 JPT2Q9H910 190 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 GAGE2DQ9UEU5 116 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 KIF25-AS1Q9Y6Z4 181 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 STARD9Q9P2P6 4700 aa5.76□□□□□ -1.49
USP54-212ENST00000480210 CSMD3Q7Z407 3707 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 A0A087WWL8 130 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 A0A096LPF7 62 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 IGHV3-73A0A0B4J1V6 119 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 PPP1R17O96001 155 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 IGKCP01834 107 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 SCGB1C2P0DMR2 95 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 IFITM1P13164 125 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 GYPEP15421 78 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 NMUP48645 174 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 ZNF56Q15929 161 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 KRTAP3-3Q9BYR6 98 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 KRTAP3-2Q9BYR7 98 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 MSRB1Q9NZV6 116 aa5.75□□□□□ -1.49
USP54-212ENST00000480210 PLECQ15149 4684 aaKnown RBP5.74□□□□□ -1.49
USP54-212ENST00000480210 TRBV7-3A0A075B6L6 115 aa5.74□□□□□ -1.49
USP54-212ENST00000480210 LINC00315P59091 139 aa5.74□□□□□ -1.49
USP54-212ENST00000480210 WFDC2Q14508 124 aa5.74□□□□□ -1.49
USP54-212ENST00000480210 C5orf47Q569G3 176 aa5.74□□□□□ -1.49
USP54-212ENST00000480210 PAPPA-AS1Q5QFB9 102 aa5.74□□□□□ -1.49
USP54-212ENST00000480210 UBE2DNLQ8IWF7 75 aa5.74□□□□□ -1.49
USP54-212ENST00000480210 LINC01600Q96MT4 127 aa5.74□□□□□ -1.49
USP54-212ENST00000480210 NHP2Q9NX24 153 aaKnown RBP5.74□□□□□ -1.49
USP54-212ENST00000480210 TRBV25-1A0A075B6N4 114 aa5.73□□□□□ -1.49
USP54-212ENST00000480210 MGPP08493 103 aa5.73□□□□□ -1.49
USP54-212ENST00000480210 FCER1GP30273 86 aa5.73□□□□□ -1.49
USP54-212ENST00000480210 RPL32P62910 135 aaKnown RBP5.73□□□□□ -1.49
USP54-212ENST00000480210 DAZ4Q86SG3 579 aaKnown RBP5.73□□□□□ -1.49
USP54-212ENST00000480210 LINC00476Q8WZB0 136 aa5.73□□□□□ -1.49
USP54-212ENST00000480210 PRELID3AQ96N28 172 aa5.73□□□□□ -1.49
USP54-212ENST00000480210 HIST1H4GQ99525 98 aa5.73□□□□□ -1.49
USP54-212ENST00000480210 UPK3BQ9BT76 320 aa5.73□□□□□ -1.49
USP54-212ENST00000480210 IMUPQ9GZP8 106 aa5.73□□□□□ -1.49
USP54-212ENST00000480210 DAZ3Q9NR90 486 aaKnown RBP5.73□□□□□ -1.49
USP54-212ENST00000480210 PRO0461Q9UI25 63 aa5.73□□□□□ -1.49
USP54-212ENST00000480210 LCE6AA0A183 80 aa5.72□□□□□ -1.49
USP54-212ENST00000480210 M0QY20 66 aa5.72□□□□□ -1.49
USP54-212ENST00000480210 FAM104BQ5XKR9 115 aa5.72□□□□□ -1.49
USP54-212ENST00000480210 SUMO4Q6EEV6 95 aa5.72□□□□□ -1.49
USP54-212ENST00000480210 LYPD5Q6UWN5 251 aa5.72□□□□□ -1.49
USP54-212ENST00000480210 Q6ZSN1 163 aa5.72□□□□□ -1.49
USP54-212ENST00000480210 ZNRF2Q8NHG8 242 aa5.72□□□□□ -1.49
USP54-212ENST00000480210 TRAV12-1A0A0B4J245 112 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 MYMXA0A1B0GTQ4 84 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 LY6G6CO95867 125 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 NPYP01303 97 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 LINC00694P0DN24 101 aa5.71□□□□□ -1.5
USP54-212ENST00000480210 NDUFV3P56181 108 aaKnown RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms