RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GRIFINA4D1Z8 144 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 M0R036 132 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 AKR1C3P42330 323 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 S100A12P80511 92 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 PHF5AQ7RTV0 110 aaKnown RBP4.66□□□□□ -1.66
USP54-211ENST00000474929 Q86TA4 180 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 C20orf203Q8NBC4 194 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 SFRP2Q96HF1 295 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 DERL1Q9BUN8 251 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 ZFP30Q9Y2G7 519 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 TRBV6-1A0A0K0K1D8 114 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 SCO2A0A1W2PP80 73 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 B4DEV8 164 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 F8W036 122 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 SH2D1AO60880 128 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 TAGLN2P37802 199 aaKnown RBP4.65□□□□□ -1.67
USP54-211ENST00000474929 RAB4BP61018 213 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 SYCNQ0VAF6 134 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 RHEBQ15382 184 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 BAGE2Q86Y30 109 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 LINC00304Q8N9R0 145 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 FMC1Q96HJ9 113 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 JPT2Q9H910 190 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 BIN3Q9NQY0 253 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 SMCO4Q9NRQ5 59 aa4.65□□□□□ -1.67
USP54-211ENST00000474929 IGHV1-58A0A0C4DH39 117 aa4.64□□□□□ -1.67
USP54-211ENST00000474929 ZNF561-AS1K7EIQ3 104 aa4.64□□□□□ -1.67
USP54-211ENST00000474929 SSTP61278 116 aa4.64□□□□□ -1.67
USP54-211ENST00000474929 NEXN-AS1Q8NBZ9 246 aa4.64□□□□□ -1.67
USP54-211ENST00000474929 TCEAL7Q9BRU2 100 aa4.64□□□□□ -1.67
USP54-211ENST00000474929 KRTAP4-1Q9BYQ7 146 aa4.64□□□□□ -1.67
USP54-211ENST00000474929 H3BVH4 76 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 UBE2L6O14933 153 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 SCO1O75880 301 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 APOMO95445 188 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 TSHBP01222 138 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 LTAP01374 205 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 MT-ND4LP03901 98 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 S100A8P05109 93 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 S100A9P06702 114 aaKnown RBP4.63□□□□□ -1.67
USP54-211ENST00000474929 ARMS2P0C7Q2 107 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 CFC1P0CG37 223 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 RPL35P42766 123 aaKnown RBP4.63□□□□□ -1.67
USP54-211ENST00000474929 ZNF56Q15929 161 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 NTM-AS1Q6ZSK4 140 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 ZFP82Q8N141 532 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 TMEM243Q9BU79 118 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 MANBALQ9NQG1 85 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 LINC00846Q9NV44 126 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 TMEM242Q9NWH2 141 aa4.63□□□□□ -1.67
USP54-211ENST00000474929 IGLV4-69A0A075B6H9 119 aa4.62□□□□□ -1.67
USP54-211ENST00000474929 MUC21A0A140T8X8 626 aa4.62□□□□□ -1.67
USP54-211ENST00000474929 TNFRSF6BO95407 300 aa4.62□□□□□ -1.67
USP54-211ENST00000474929 IFNA1P01562 189 aa4.62□□□□□ -1.67
USP54-211ENST00000474929 CAMPP49913 170 aa4.62□□□□□ -1.67
USP54-211ENST00000474929 RAB5BP61020 215 aa4.62□□□□□ -1.67
USP54-211ENST00000474929 SSBP4Q9BWG4 385 aaPredicted RBP4.62□□□□□ -1.67
USP54-211ENST00000474929 NEBP20929 6669 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 IGLV4-60A0A075B6I1 120 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 M0R381 172 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 ZNF861PO60384 105 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 ADCYAP1P18509 176 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 UBE2BP63146 152 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 MEF2BQ02080 365 aaPredicted RBP4.61□□□□□ -1.67
USP54-211ENST00000474929 RPL18AQ02543 176 aaKnown RBP4.61□□□□□ -1.67
USP54-211ENST00000474929 PNRC1Q12796 327 aaPredicted RBP4.61□□□□□ -1.67
USP54-211ENST00000474929 KRTAP13-3Q3SY46 172 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 CENPWQ5EE01 88 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 DNLZQ5SXM8 178 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 COX8CQ7Z4L0 72 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 LINC00518Q8N0U6 118 aa4.61□□□□□ -1.67
USP54-211ENST00000474929 CHCHD10Q8WYQ3 142 aaPredicted RBP4.61□□□□□ -1.67
USP54-211ENST00000474929 A0A087X002 238 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 C1orf196B1AJZ1 125 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 PDE6DO43924 150 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 BCL2P10415 239 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 GNG4P50150 75 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 CEBPGP53567 150 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 KRTAP19-2Q3LHN2 52 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 LINC01559Q495D7 138 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 FAM74A3Q4VXF1 159 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 C11orf52Q96A22 123 aa4.6□□□□□ -1.67
USP54-211ENST00000474929 COLCA2A8K830 154 aa4.59□□□□□ -1.67
USP54-211ENST00000474929 F5H697 171 aa4.59□□□□□ -1.67
USP54-211ENST00000474929 SMIM6P0DI80 62 aa4.59□□□□□ -1.67
USP54-211ENST00000474929 OR2D3Q8NGH3 330 aa4.59□□□□□ -1.67
USP54-211ENST00000474929 BTF3L4Q96K17 158 aa4.59□□□□□ -1.67
USP54-211ENST00000474929 TPPP3Q9BW30 176 aa4.59□□□□□ -1.67
USP54-211ENST00000474929 C19orf71A6NCJ1 209 aa4.58□□□□□ -1.68
USP54-211ENST00000474929 NUPR1O60356 82 aa4.58□□□□□ -1.68
USP54-211ENST00000474929 FOXI1Q12951 378 aa4.58□□□□□ -1.68
USP54-211ENST00000474929 SPANXN1Q5VSR9 72 aa4.58□□□□□ -1.68
USP54-211ENST00000474929 OR10AG1Q8NH19 301 aa4.58□□□□□ -1.68
USP54-211ENST00000474929 OCC1Q8TAD7 63 aa4.58□□□□□ -1.68
USP54-211ENST00000474929 PGLYRP4Q96LB8 373 aa4.58□□□□□ -1.68
USP54-211ENST00000474929 KIR2DL4Q99706 377 aa4.58□□□□□ -1.68
USP54-211ENST00000474929 CTDSP1Q9GZU7 261 aa4.58□□□□□ -1.68
USP54-211ENST00000474929 EIF5A2Q9GZV4 153 aaKnown RBP4.58□□□□□ -1.68
USP54-211ENST00000474929 TRBV20OR9-2A0A075B6H5 130 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 IGKV3OR2-268A0A0C4DH90 116 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms