RNA–Protein interactions for RNA: ENST00000474742.1

HDAC9-222, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-222ENST00000474742 HMGN4O00479 90 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 INE1O15225 51 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 CFDP00746 253 aaPredicted RBP0.38□□□□□ -2.35
HDAC9-222ENST00000474742 ARMS2P0C7Q2 107 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 RNASE3P12724 160 aaKnown RBP0.38□□□□□ -2.35
HDAC9-222ENST00000474742 CCL3L1P16619 93 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 IFI27P40305 119 aaPredicted RBP0.38□□□□□ -2.35
HDAC9-222ENST00000474742 FXYD4P59646 89 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 KLKP1Q107X0 134 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 ATXN8Q156A1 80 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 LINC00575Q6W349 94 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 VMO1Q7Z5L0 202 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 FAM223AQ8IWN6 122 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 Q8N2B8 174 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 WFDC9Q8NEX5 89 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 ZNF563Q8TA94 476 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 SMIM11BQ8TCY0 68 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 AMELYQ99218 206 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 BPESC1Q9GZL8 116 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 NDUFA4L2Q9NRX3 87 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 UBE2D4Q9Y2X8 147 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 TET1Q8NFU7 2136 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 PTPRFP10586 1907 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 PTPRDP23468 1912 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 FOCADQ5VW36 1801 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 KIAA1549LQ6ZVL6 1849 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 PHIPQ8WWQ0 1821 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 KIF20BQ96Q89 1820 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 SPHKAPQ2M3C7 1700 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 BCORL1Q5H9F3 1711 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 ARAP2Q8WZ64 1704 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 KIAA1551Q9HCM1 1747 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 ANKRD26Q9UPS8 1709 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 LRP5O75197 1615 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 SMARCA4P51532 1647 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 MAP3K4Q9Y6R4 1608 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 DISP1Q96F81 1524 aa0.38□□□□□ -2.35
HDAC9-222ENST00000474742 FN1P02751 2386 aaKnown RBP0.38□□□□□ -2.35
HDAC9-222ENST00000474742 KIAA1549Q9HCM3 1950 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 GBF1Q92538 1859 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 TRPM7Q96QT4 1865 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 TANC1Q9C0D5 1861 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 RGPD3A6NKT7 1758 aaPredicted RBP0.37□□□□□ -2.35
HDAC9-222ENST00000474742 LAMB2P55268 1798 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 KIDINS220Q9ULH0 1771 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 KDM5AP29375 1690 aaKnown RBP0.37□□□□□ -2.35
HDAC9-222ENST00000474742 CADP27708 2225 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 GOLGA4Q13439 2230 aaKnown RBP0.37□□□□□ -2.35
HDAC9-222ENST00000474742 ADGRB1O14514 1584 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 LAMC3Q9Y6N6 1575 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 MYO7BQ6PIF6 2116 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 NKTRP30414 1462 aaKnown RBP0.37□□□□□ -2.35
HDAC9-222ENST00000474742 PXDNQ92626 1479 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 AKAP11Q9UKA4 1901 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 PSME4Q14997 1843 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 PARP14Q460N5 1801 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 LOC110117498A0A087WWA1 95 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 A0A087WWC5 75 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 TRAV22A0A0B4J277 110 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 TRAV21A0A0B4J279 112 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 A0A1B0GU69 56 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 IQCF6A8MYZ5 107 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 B4DSR2 109 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 H0Y9P7 68 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 M0R2N4 97 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 M0R3E3 92 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 HCRTO43612 131 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 MRPL33O75394 65 aaKnown RBP0.37□□□□□ -2.35
HDAC9-222ENST00000474742 ANGP03950 147 aaKnown RBP0.37□□□□□ -2.35
HDAC9-222ENST00000474742 NMBP08949 121 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 ARL14EPLP0DKL9 152 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 IGLC2P0DOY2 106 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 IGLC3P0DOY3 106 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 COX8AP10176 69 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 SPINT3P49223 89 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 EFNA4P52798 201 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 CCL18P55774 89 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 UBE2D3P61077 147 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 CNBPP62633 177 aaKnown RBP0.37□□□□□ -2.35
HDAC9-222ENST00000474742 UBE2D2P62837 147 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 FXYD3Q14802 87 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 DEFB112Q30KQ8 113 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 PIGYQ3MUY2 71 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 SPRNQ5BIV9 151 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 NMSQ5H8A3 153 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 BVES-AS1Q5T3Y7 98 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 C10orf113Q5VZT2 155 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 NCBP2-AS2Q69YL0 99 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 Q6JHZ5 121 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 UBE2DNLQ8IWF7 75 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 DEFB107AQ8IZN7 70 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 C18orf32Q8TCD1 76 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 TMEM263Q8WUH6 116 aaKnown RBP0.37□□□□□ -2.35
HDAC9-222ENST00000474742 USMG5Q96IX5 58 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 OBSCN-AS1Q96MR7 158 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 GAFA1Q96PS6 74 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 ODF3Q96PU9 254 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 CCL19Q99731 98 aa0.37□□□□□ -2.35
HDAC9-222ENST00000474742 C20orf78Q9BR46 151 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms