RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 GCSHP23434 173 aa9.93□□□□□ -0.82
LIMS1-212ENST00000474038 MRPL52Q86TS9 123 aaKnown RBP9.93□□□□□ -0.82
LIMS1-212ENST00000474038 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.92□□□□□ -0.82
LIMS1-212ENST00000474038 TRAV9-1A0A075B6T8 112 aa9.92□□□□□ -0.82
LIMS1-212ENST00000474038 IGKV3OR2-268A0A0C4DH90 116 aa9.92□□□□□ -0.82
LIMS1-212ENST00000474038 RHEBQ15382 184 aa9.92□□□□□ -0.82
LIMS1-212ENST00000474038 TMEM101Q96IK0 257 aa9.92□□□□□ -0.82
LIMS1-212ENST00000474038 USP17L23D6RBM5 183 aa9.91□□□□□ -0.82
LIMS1-212ENST00000474038 OR5A1Q8NGJ0 315 aa9.91□□□□□ -0.82
LIMS1-212ENST00000474038 RPS10P5Q9NQ39 176 aa9.91□□□□□ -0.82
LIMS1-212ENST00000474038 TCAPO15273 167 aa9.9□□□□□ -0.82
LIMS1-212ENST00000474038 S100PP25815 95 aa9.9□□□□□ -0.82
LIMS1-212ENST00000474038 CDC42SE2Q9NRR3 84 aa9.9□□□□□ -0.82
LIMS1-212ENST00000474038 LAMTOR2Q9Y2Q5 125 aa9.9□□□□□ -0.82
LIMS1-212ENST00000474038 DNAH8Q96JB1 4490 aa9.9□□□□□ -0.83
LIMS1-212ENST00000474038 PRSS47A8MTI9 375 aa9.89□□□□□ -0.83
LIMS1-212ENST00000474038 APOC3P02656 99 aa9.89□□□□□ -0.83
LIMS1-212ENST00000474038 HAMPP81172 84 aa9.89□□□□□ -0.83
LIMS1-212ENST00000474038 C14orf177Q52M58 125 aa9.89□□□□□ -0.83
LIMS1-212ENST00000474038 UBE2D4Q9Y2X8 147 aa9.89□□□□□ -0.83
LIMS1-212ENST00000474038 EPM2AB3EWF7 344 aa9.88□□□□□ -0.83
LIMS1-212ENST00000474038 DGAT2L7PQ6IED9 249 aa9.88□□□□□ -0.83
LIMS1-212ENST00000474038 ZNF664Q8N3J9 261 aa9.88□□□□□ -0.83
LIMS1-212ENST00000474038 CSDC2Q9Y534 153 aaKnown RBP9.88□□□□□ -0.83
LIMS1-212ENST00000474038 LOC389332A0A1B0GUA5 103 aa9.87□□□□□ -0.83
LIMS1-212ENST00000474038 GAGE12HA6NDE8 117 aa9.87□□□□□ -0.83
LIMS1-212ENST00000474038 PRSS1P07477 247 aa9.87□□□□□ -0.83
LIMS1-212ENST00000474038 RPL39P62891 51 aaKnown RBP9.87□□□□□ -0.83
LIMS1-212ENST00000474038 SMAGPQ0VAQ4 97 aa9.87□□□□□ -0.83
LIMS1-212ENST00000474038 CHCHD10Q8WYQ3 142 aaPredicted RBP9.87□□□□□ -0.83
LIMS1-212ENST00000474038 TMEM18Q96B42 140 aa9.87□□□□□ -0.83
LIMS1-212ENST00000474038 TIMM21Q9BVV7 248 aa9.87□□□□□ -0.83
LIMS1-212ENST00000474038 MAP1LC3AQ9H492 121 aa9.87□□□□□ -0.83
LIMS1-212ENST00000474038 LINC00959A0A1B0GUT2 108 aa9.86□□□□□ -0.83
LIMS1-212ENST00000474038 NDUFA5Q16718 116 aa9.86□□□□□ -0.83
LIMS1-212ENST00000474038 KIAA1644Q3SXP7 199 aa9.86□□□□□ -0.83
LIMS1-212ENST00000474038 SVBPQ8N300 66 aa9.86□□□□□ -0.83
LIMS1-212ENST00000474038 GNB1LQ9BYB4 327 aa9.86□□□□□ -0.83
LIMS1-212ENST00000474038 SNAPINO95295 136 aa9.85□□□□□ -0.83
LIMS1-212ENST00000474038 SMR3BP02814 79 aaPredicted RBP9.85□□□□□ -0.83
LIMS1-212ENST00000474038 RAB5AP20339 215 aa9.85□□□□□ -0.83
LIMS1-212ENST00000474038 LINC01620Q4KN68 170 aa9.85□□□□□ -0.83
LIMS1-212ENST00000474038 Q8N8P6 123 aa9.85□□□□□ -0.83
LIMS1-212ENST00000474038 RNASE13Q5GAN3 156 aaKnown RBP9.84□□□□□ -0.83
LIMS1-212ENST00000474038 Q5VSD8 79 aa9.84□□□□□ -0.83
LIMS1-212ENST00000474038 Q6ZUT4 128 aa9.84□□□□□ -0.83
LIMS1-212ENST00000474038 FAM104AQ969W3 186 aa9.84□□□□□ -0.83
LIMS1-212ENST00000474038 FAM30AQ9NZY2 134 aa9.84□□□□□ -0.83
LIMS1-212ENST00000474038 CCL25O15444 150 aa9.83□□□□□ -0.84
LIMS1-212ENST00000474038 XCL1P47992 114 aa9.83□□□□□ -0.84
LIMS1-212ENST00000474038 FOXI1Q12951 378 aa9.83□□□□□ -0.84
LIMS1-212ENST00000474038 SS18Q15532 418 aa9.83□□□□□ -0.84
LIMS1-212ENST00000474038 COX19Q49B96 90 aa9.83□□□□□ -0.84
LIMS1-212ENST00000474038 VPS13BQ7Z7G8 4022 aa9.82□□□□□ -0.84
LIMS1-212ENST00000474038 TGIF2-C20orf24A0A0A6YYL0 155 aa9.82□□□□□ -0.84
LIMS1-212ENST00000474038 C15orf56Q8N910 161 aa9.82□□□□□ -0.84
LIMS1-212ENST00000474038 SPANXA1Q9NS26 97 aa9.82□□□□□ -0.84
LIMS1-212ENST00000474038 hDV102S1A0JD36 115 aa9.81□□□□□ -0.84
LIMS1-212ENST00000474038 MT-ND6P03923 174 aa9.81□□□□□ -0.84
LIMS1-212ENST00000474038 IFI27P40305 119 aaPredicted RBP9.81□□□□□ -0.84
LIMS1-212ENST00000474038 SLC7A5P1Q8MH63 180 aa9.81□□□□□ -0.84
LIMS1-212ENST00000474038 OPRPNQ99935 248 aaPredicted RBP9.81□□□□□ -0.84
LIMS1-212ENST00000474038 MRPL18Q9H0U6 180 aaKnown RBP9.81□□□□□ -0.84
LIMS1-212ENST00000474038 NXT2Q9NPJ8 142 aaKnown RBP9.81□□□□□ -0.84
LIMS1-212ENST00000474038 C1orf196B1AJZ1 125 aa9.8□□□□□ -0.84
LIMS1-212ENST00000474038 MRPS36P82909 103 aaKnown RBP9.8□□□□□ -0.84
LIMS1-212ENST00000474038 CFAP161Q6P656 301 aa9.8□□□□□ -0.84
LIMS1-212ENST00000474038 CD164L2Q6UWJ8 174 aa9.8□□□□□ -0.84
LIMS1-212ENST00000474038 Q6ZSA8 131 aa9.8□□□□□ -0.84
LIMS1-212ENST00000474038 ALKBH7Q9BT30 221 aaPredicted RBP9.8□□□□□ -0.84
LIMS1-212ENST00000474038 TRAV13-1A0A0B4J241 112 aa9.79□□□□□ -0.84
LIMS1-212ENST00000474038 K7EMI3 77 aa9.79□□□□□ -0.84
LIMS1-212ENST00000474038 INAFM2P0DMQ5 153 aa9.79□□□□□ -0.84
LIMS1-212ENST00000474038 FABP9Q0Z7S8 132 aa9.79□□□□□ -0.84
LIMS1-212ENST00000474038 C9orf163Q8N9P6 203 aa9.79□□□□□ -0.84
LIMS1-212ENST00000474038 PYGO1Q9Y3Y4 419 aa9.79□□□□□ -0.84
LIMS1-212ENST00000474038 SLPIP03973 132 aa9.78□□□□□ -0.84
LIMS1-212ENST00000474038 CNBPP62633 177 aaKnown RBP9.78□□□□□ -0.84
LIMS1-212ENST00000474038 ORMDL2Q53FV1 153 aa9.78□□□□□ -0.84
LIMS1-212ENST00000474038 GVQW2A0A096LPI5 108 aaPredicted RBP9.77□□□□□ -0.85
LIMS1-212ENST00000474038 HIGD2BQ4VC39 106 aa9.77□□□□□ -0.85
LIMS1-212ENST00000474038 C2orf66Q6UXQ4 117 aa9.77□□□□□ -0.85
LIMS1-212ENST00000474038 AP5S1Q9NUS5 200 aa9.77□□□□□ -0.85
LIMS1-212ENST00000474038 CYSLTR1Q9Y271 337 aa9.77□□□□□ -0.85
LIMS1-212ENST00000474038 SRRM2Q9UQ35 2752 aaKnown RBP9.77□□□□□ -0.85
LIMS1-212ENST00000474038 IGLV4-3A0A075B6K6 122 aa9.76□□□□□ -0.85
LIMS1-212ENST00000474038 PRSS3P2Q8NHM4 247 aa9.76□□□□□ -0.85
LIMS1-212ENST00000474038 YPEL4Q96NS1 127 aa9.76□□□□□ -0.85
LIMS1-212ENST00000474038 TRAPPC1Q9Y5R8 145 aa9.76□□□□□ -0.85
LIMS1-212ENST00000474038 IGHV1-58A0A0C4DH39 117 aa9.75□□□□□ -0.85
LIMS1-212ENST00000474038 IFITM10A6NMD0 228 aa9.75□□□□□ -0.85
LIMS1-212ENST00000474038 FAM229AH3BQW9 127 aa9.75□□□□□ -0.85
LIMS1-212ENST00000474038 LINC01546A6NGU7 62 aa9.74□□□□□ -0.85
LIMS1-212ENST00000474038 COX7A2LO14548 114 aa9.74□□□□□ -0.85
LIMS1-212ENST00000474038 TMEM141Q96I45 108 aa9.74□□□□□ -0.85
LIMS1-212ENST00000474038 FLG2Q5D862 2391 aaPredicted RBP9.73□□□□□ -0.85
LIMS1-212ENST00000474038 MYCBP2O75592 4640 aa9.73□□□□□ -0.85
LIMS1-212ENST00000474038 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.73□□□□□ -0.85
LIMS1-212ENST00000474038 IGIPA6NJ69 53 aa9.73□□□□□ -0.85
LIMS1-212ENST00000474038 G0S2P27469 103 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms