RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 MEIG1Q5JSS6 88 aa4.47□□□□□ -1.69
HERC4-209ENST00000473533 LINC00308Q8TCZ7 52 aa4.47□□□□□ -1.69
HERC4-209ENST00000473533 DYNLRB2Q8TF09 96 aa4.47□□□□□ -1.69
HERC4-209ENST00000473533 DEFB131AP59861 70 aa4.46□□□□□ -1.7
HERC4-209ENST00000473533 SS18L2Q9UHA2 77 aa4.46□□□□□ -1.7
HERC4-209ENST00000473533 ABCA12Q86UK0 2595 aa4.46□□□□□ -1.7
HERC4-209ENST00000473533 TRAV25A0A0B4J276 109 aa4.46□□□□□ -1.7
HERC4-209ENST00000473533 ADARB2-AS1A8MUL3 147 aa4.46□□□□□ -1.7
HERC4-209ENST00000473533 NHLRC4P0CG21 123 aaPredicted RBP4.46□□□□□ -1.7
HERC4-209ENST00000473533 LY6DQ14210 128 aa4.46□□□□□ -1.7
HERC4-209ENST00000473533 ADAMTSL4-AS1Q5T5F5 129 aa4.46□□□□□ -1.7
HERC4-209ENST00000473533 Q9H8V8 135 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 JMJD1CQ15652 2540 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.45□□□□□ -1.7
HERC4-209ENST00000473533 IGKV2-29A2NJV5 120 aaPredicted RBP4.45□□□□□ -1.7
HERC4-209ENST00000473533 DEFB112Q30KQ8 113 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 PRIMA1Q86XR5 153 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 CLEC2BQ92478 149 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 CDKN2A-AS1Q9UH64 79 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 IGHV4-30-2A0A087WSY4 118 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 IGHV3-73A0A0B4J1V6 119 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 CRLF1O75462 422 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 HTN1P15515 57 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 SHISA2Q6UWI4 295 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 FAM110AQ9BQ89 295 aa4.45□□□□□ -1.7
HERC4-209ENST00000473533 H0YGX0 51 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 UBE2L6O14933 153 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 DNAL4O96015 105 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 IGHV4-59P01825 116 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 CRPP02741 224 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 USP24Q9UPU5 2620 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 KNCNA6PVL3 124 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 ITPR1Q14643 2758 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 NAV2Q8IVL1 2488 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 HIST2H2BCQ6DN03 193 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 HIST2H2BDQ6DRA6 164 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 FAM104AQ969W3 186 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 MTORP42345 2549 aa4.44□□□□□ -1.7
HERC4-209ENST00000473533 K7EQD1 137 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 BAALC-AS2P0C853 105 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 C4orf3Q8WVX3 66 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 PRRC2AP48634 2157 aaKnown RBP4.43□□□□□ -1.7
HERC4-209ENST00000473533 CCDC179H3BU77 68 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 UQCRQO14949 82 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 EDN2P20800 178 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 GNLYP22749 145 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 NPC2P61916 151 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 TMEM95Q3KNT9 176 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 CEMP1Q6PRD7 247 aaPredicted RBP4.43□□□□□ -1.7
HERC4-209ENST00000473533 C11orf72Q8NBR9 251 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 MAP6D1Q9H9H5 199 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 C19orf84I3L1E1 186 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 RPL28P46779 137 aaKnown RBP4.43□□□□□ -1.7
HERC4-209ENST00000473533 RNASE13Q5GAN3 156 aaKnown RBP4.43□□□□□ -1.7
HERC4-209ENST00000473533 LINC00242Q5T6M2 205 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 Q6YL49 198 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 STHQ8IWL8 128 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 CITED2Q99967 270 aaPredicted RBP4.43□□□□□ -1.7
HERC4-209ENST00000473533 TMEM243Q9BU79 118 aa4.43□□□□□ -1.7
HERC4-209ENST00000473533 LRRK2Q5S007 2527 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 FN1P02751 2386 aaKnown RBP4.42□□□□□ -1.7
HERC4-209ENST00000473533 UTP20O75691 2785 aaKnown RBP4.42□□□□□ -1.7
HERC4-209ENST00000473533 RBMY1BA6NDE4 496 aaKnown RBP4.42□□□□□ -1.7
HERC4-209ENST00000473533 RBMY1EA6NEQ0 496 aaKnown RBP4.42□□□□□ -1.7
HERC4-209ENST00000473533 SMIM1B2RUZ4 78 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 ATOX1O00244 68 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 RBMY1DP0C7P1 496 aaKnown RBP4.42□□□□□ -1.7
HERC4-209ENST00000473533 RBMY1A1P0DJD3 496 aaKnown RBP4.42□□□□□ -1.7
HERC4-209ENST00000473533 RBMY1CP0DJD4 496 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 RBMY1FQ15415 496 aaKnown RBP4.42□□□□□ -1.7
HERC4-209ENST00000473533 S100A7L2Q5SY68 101 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 ZNF702PQ9H963 129 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 PKD1L2Q7Z442 2459 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 ZNF625Q96I27 306 aaPredicted RBP4.42□□□□□ -1.7
HERC4-209ENST00000473533 IGHV3OR16-12A0A075B7B8 117 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 PROK1P58294 105 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 Q8N2B8 174 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 C3orf22Q8N5N4 141 aa4.42□□□□□ -1.7
HERC4-209ENST00000473533 HIVEP3Q5T1R4 2406 aa4.41□□□□□ -1.7
HERC4-209ENST00000473533 BAHCC1Q9P281 2608 aa4.41□□□□□ -1.7
HERC4-209ENST00000473533 ZFHX3Q15911 3703 aa4.41□□□□□ -1.7
HERC4-209ENST00000473533 FAM236AA0A1B0GUQ0 79 aa4.41□□□□□ -1.7
HERC4-209ENST00000473533 FAM236BA0A1B0GV22 79 aa4.41□□□□□ -1.7
HERC4-209ENST00000473533 C9orf153Q5TBE3 101 aa4.41□□□□□ -1.7
HERC4-209ENST00000473533 MALP21145 153 aa4.41□□□□□ -1.7
HERC4-209ENST00000473533 TMEM86BQ8N661 226 aa4.41□□□□□ -1.7
HERC4-209ENST00000473533 TRGV1A0A0A0MS02 117 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 IGHV3-38A0A0C4DH36 116 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 SDIM1Q6ZPB5 146 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 CDC42SE2Q9NRR3 84 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 ZANQ9Y493 2812 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 TRAV13-1A0A0B4J241 112 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 A0A1B0GX51 115 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 DEFB114Q30KQ6 69 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 C11orf44Q8N8P7 122 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 COX7B2Q8TF08 81 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 HIVEP2P31629 2446 aa4.4□□□□□ -1.7
HERC4-209ENST00000473533 FASNP49327 2511 aaKnown RBP4.4□□□□□ -1.71
HERC4-209ENST00000473533 IBA57-AS1B1ANH7 110 aa4.4□□□□□ -1.71
HERC4-209ENST00000473533 AVPP01185 164 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms