RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 MRPL51Q4U2R6 128 aaKnown RBP7.7□□□□□ -1.18
SYNE1-221ENST00000472563 DMBT1Q9UGM3 2413 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-221ENST00000472563 TRBV24-1A0A075B6N3 115 aa7.69□□□□□ -1.18
SYNE1-221ENST00000472563 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-221ENST00000472563 C7orf77A4D0Y5 90 aa7.69□□□□□ -1.18
SYNE1-221ENST00000472563 SLPIP03973 132 aa7.69□□□□□ -1.18
SYNE1-221ENST00000472563 FCER1GP30273 86 aa7.69□□□□□ -1.18
SYNE1-221ENST00000472563 RAB14P61106 215 aa7.69□□□□□ -1.18
SYNE1-221ENST00000472563 C15orf56Q8N910 161 aa7.69□□□□□ -1.18
SYNE1-221ENST00000472563 KIR2DL4Q99706 377 aa7.69□□□□□ -1.18
SYNE1-221ENST00000472563 C20orf78Q9BR46 151 aa7.69□□□□□ -1.18
SYNE1-221ENST00000472563 CDC42SE2Q9NRR3 84 aa7.69□□□□□ -1.18
SYNE1-221ENST00000472563 IGHV3-64A0A075B6Q5 118 aa7.68□□□□□ -1.18
SYNE1-221ENST00000472563 LINC00959A0A1B0GUT2 108 aa7.68□□□□□ -1.18
SYNE1-221ENST00000472563 A0A1B0GXF2 115 aa7.68□□□□□ -1.18
SYNE1-221ENST00000472563 F8W036 122 aa7.68□□□□□ -1.18
SYNE1-221ENST00000472563 CKS2P33552 79 aa7.68□□□□□ -1.18
SYNE1-221ENST00000472563 RPL32P62910 135 aaKnown RBP7.68□□□□□ -1.18
SYNE1-221ENST00000472563 HBBP68871 147 aa7.68□□□□□ -1.18
SYNE1-221ENST00000472563 FOXI1Q12951 378 aa7.68□□□□□ -1.18
SYNE1-221ENST00000472563 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-221ENST00000472563 FLG2Q5D862 2391 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-221ENST00000472563 SMAGPQ0VAQ4 97 aa7.67□□□□□ -1.18
SYNE1-221ENST00000472563 CIRBPQ14011 172 aaKnown RBP7.67□□□□□ -1.18
SYNE1-221ENST00000472563 MRPL54Q6P161 138 aaKnown RBP7.67□□□□□ -1.18
SYNE1-221ENST00000472563 ZNF664Q8N3J9 261 aa7.67□□□□□ -1.18
SYNE1-221ENST00000472563 CSDC2Q9Y534 153 aaKnown RBP7.67□□□□□ -1.18
SYNE1-221ENST00000472563 GVQW2A0A096LPI5 108 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-221ENST00000472563 PANO1I0J062 215 aa7.66□□□□□ -1.18
SYNE1-221ENST00000472563 TCAPO15273 167 aa7.66□□□□□ -1.18
SYNE1-221ENST00000472563 CCL25O15444 150 aa7.66□□□□□ -1.18
SYNE1-221ENST00000472563 XCL1P47992 114 aa7.66□□□□□ -1.18
SYNE1-221ENST00000472563 KRTAP10-4P60372 401 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-221ENST00000472563 PNRC1Q12796 327 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-221ENST00000472563 SS18Q15532 418 aa7.66□□□□□ -1.18
SYNE1-221ENST00000472563 PHOX2AO14813 284 aa7.65□□□□□ -1.18
SYNE1-221ENST00000472563 TNFRSF6BO95407 300 aa7.65□□□□□ -1.18
SYNE1-221ENST00000472563 PPBPP02775 128 aa7.65□□□□□ -1.18
SYNE1-221ENST00000472563 HIGD2BQ4VC39 106 aa7.65□□□□□ -1.18
SYNE1-221ENST00000472563 CD164L2Q6UWJ8 174 aa7.65□□□□□ -1.18
SYNE1-221ENST00000472563 ATP5L2Q7Z4Y8 100 aa7.65□□□□□ -1.18
SYNE1-221ENST00000472563 TIMM21Q9BVV7 248 aa7.65□□□□□ -1.18
SYNE1-221ENST00000472563 UBE2D4Q9Y2X8 147 aa7.65□□□□□ -1.18
SYNE1-221ENST00000472563 IGHV1-58A0A0C4DH39 117 aa7.64□□□□□ -1.19
SYNE1-221ENST00000472563 D6R8Y8 96 aa7.64□□□□□ -1.19
SYNE1-221ENST00000472563 MT-ND4LP03901 98 aa7.64□□□□□ -1.19
SYNE1-221ENST00000472563 CLLU1Q5K131 121 aa7.64□□□□□ -1.19
SYNE1-221ENST00000472563 TMEM18Q96B42 140 aa7.64□□□□□ -1.19
SYNE1-221ENST00000472563 SMIM2Q9BVW6 85 aa7.64□□□□□ -1.19
SYNE1-221ENST00000472563 C1orf196B1AJZ1 125 aa7.63□□□□□ -1.19
SYNE1-221ENST00000472563 ANAPC16Q96DE5 110 aa7.63□□□□□ -1.19
SYNE1-221ENST00000472563 NPYP01303 97 aa7.62□□□□□ -1.19
SYNE1-221ENST00000472563 ORMDL3Q8N138 153 aa7.62□□□□□ -1.19
SYNE1-221ENST00000472563 SPACA4Q8TDM5 124 aa7.62□□□□□ -1.19
SYNE1-221ENST00000472563 DPH3Q96FX2 82 aa7.62□□□□□ -1.19
SYNE1-221ENST00000472563 KRTAP29-1A8MX34 341 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-221ENST00000472563 CHTF8P0CG12 524 aa7.61□□□□□ -1.19
SYNE1-221ENST00000472563 RPL37AP61513 92 aaKnown RBP7.61□□□□□ -1.19
SYNE1-221ENST00000472563 COX6A2Q02221 97 aa7.61□□□□□ -1.19
SYNE1-221ENST00000472563 TMEM136Q6ZRR5 245 aa7.61□□□□□ -1.19
SYNE1-221ENST00000472563 A0A087WYN8 130 aa7.6□□□□□ -1.19
SYNE1-221ENST00000472563 Q6ZUT4 128 aa7.6□□□□□ -1.19
SYNE1-221ENST00000472563 PRSS3P2Q8NHM4 247 aa7.6□□□□□ -1.19
SYNE1-221ENST00000472563 PRELID3AQ96N28 172 aa7.6□□□□□ -1.19
SYNE1-221ENST00000472563 SPANXA1Q9NS26 97 aa7.6□□□□□ -1.19
SYNE1-221ENST00000472563 PLAC8Q9NZF1 115 aa7.6□□□□□ -1.19
SYNE1-221ENST00000472563 TRAV13-1A0A0B4J241 112 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 PRSS47A8MTI9 375 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 J3QL48 77 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 ZNF561-AS1K7EIQ3 104 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 COX7A2LO14548 114 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 RAB5AP20339 215 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 RPL39P62891 51 aaKnown RBP7.59□□□□□ -1.19
SYNE1-221ENST00000472563 RNASE13Q5GAN3 156 aaKnown RBP7.59□□□□□ -1.19
SYNE1-221ENST00000472563 UQCC3Q6UW78 93 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 FAM104AQ969W3 186 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 PKIGQ9Y2B9 76 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 LAMTOR2Q9Y2Q5 125 aa7.59□□□□□ -1.19
SYNE1-221ENST00000472563 MALP21145 153 aa7.58□□□□□ -1.2
SYNE1-221ENST00000472563 MRPS36P82909 103 aaKnown RBP7.58□□□□□ -1.2
SYNE1-221ENST00000472563 IFITM2Q01629 132 aa7.58□□□□□ -1.2
SYNE1-221ENST00000472563 SYCNQ0VAF6 134 aa7.58□□□□□ -1.2
SYNE1-221ENST00000472563 LINC00526Q96FQ7 95 aa7.58□□□□□ -1.2
SYNE1-221ENST00000472563 TMEM218A2RU14 115 aa7.57□□□□□ -1.2
SYNE1-221ENST00000472563 MAJINQ3KP22 176 aa7.57□□□□□ -1.2
SYNE1-221ENST00000472563 CARD19Q96LW7 228 aa7.57□□□□□ -1.2
SYNE1-221ENST00000472563 IMMP2LQ96T52 175 aa7.57□□□□□ -1.2
SYNE1-221ENST00000472563 LINC00474Q9P2X8 69 aa7.57□□□□□ -1.2
SYNE1-221ENST00000472563 IGLV4-69A0A075B6H9 119 aa7.56□□□□□ -1.2
SYNE1-221ENST00000472563 IGKV2-24A0A0C4DH68 120 aa7.56□□□□□ -1.2
SYNE1-221ENST00000472563 OXTP01178 125 aa7.56□□□□□ -1.2
SYNE1-221ENST00000472563 C5orf38Q86SI9 138 aa7.56□□□□□ -1.2
SYNE1-221ENST00000472563 OPRPNQ99935 248 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-221ENST00000472563 MAP1LC3AQ9H492 121 aa7.56□□□□□ -1.2
SYNE1-221ENST00000472563 PYGO1Q9Y3Y4 419 aa7.56□□□□□ -1.2
SYNE1-221ENST00000472563 LRP1Q07954 4544 aaKnown RBP7.56□□□□□ -1.2
SYNE1-221ENST00000472563 A0A096LNI7 61 aa7.55□□□□□ -1.2
SYNE1-221ENST00000472563 APOMO95445 188 aa7.55□□□□□ -1.2
SYNE1-221ENST00000472563 ADCYAP1P18509 176 aa7.55□□□□□ -1.2
SYNE1-221ENST00000472563 IFI27P40305 119 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms