RNA–Protein interactions for RNA: ENST00000470994.1

GPNMB-208, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 538 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-208ENST00000470994 TRGC1P0CF51 173 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 CNBPP62633 177 aaKnown RBP3.66□□□□□ -1.82
GPNMB-208ENST00000470994 EIF5AP63241 154 aaKnown RBP3.66□□□□□ -1.82
GPNMB-208ENST00000470994 CCL20P78556 96 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 COX6A2Q02221 97 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 CENPWQ5EE01 88 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 RNASEKQ6P5S7 137 aaKnown RBP3.66□□□□□ -1.82
GPNMB-208ENST00000470994 LYZL1Q6UWQ5 148 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 KRTAP7-1Q8IUC3 87 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 TMEM18Q96B42 140 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 NIT2Q9NQR4 276 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 BATF3Q9NR55 127 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 MED9Q9NWA0 146 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 PAM16Q9Y3D7 125 aa3.66□□□□□ -1.82
GPNMB-208ENST00000470994 F2Z2F3 143 aa3.65□□□□□ -1.83
GPNMB-208ENST00000470994 G3V3Q6 166 aa3.65□□□□□ -1.83
GPNMB-208ENST00000470994 PHOX2AO14813 284 aa3.65□□□□□ -1.83
GPNMB-208ENST00000470994 MT1HL1P0DM35 61 aa3.65□□□□□ -1.83
GPNMB-208ENST00000470994 NTF3P20783 257 aa3.65□□□□□ -1.83
GPNMB-208ENST00000470994 RPS10P46783 165 aaKnown RBP3.65□□□□□ -1.83
GPNMB-208ENST00000470994 GNG4P50150 75 aa3.65□□□□□ -1.83
GPNMB-208ENST00000470994 RGS21Q2M5E4 152 aa3.65□□□□□ -1.83
GPNMB-208ENST00000470994 RNF185Q96GF1 192 aa3.65□□□□□ -1.83
GPNMB-208ENST00000470994 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.64□□□□□ -1.83
GPNMB-208ENST00000470994 TRAV26-2A0A0B4J265 109 aa3.64□□□□□ -1.83
GPNMB-208ENST00000470994 IGKV2-29A2NJV5 120 aaPredicted RBP3.64□□□□□ -1.83
GPNMB-208ENST00000470994 TEX46H3BTG2 121 aa3.64□□□□□ -1.83
GPNMB-208ENST00000470994 BCL2L11O43521 198 aa3.64□□□□□ -1.83
GPNMB-208ENST00000470994 NDUFS6O75380 124 aaKnown RBP3.64□□□□□ -1.83
GPNMB-208ENST00000470994 IGLC6P0CF74 106 aa3.64□□□□□ -1.83
GPNMB-208ENST00000470994 SMIM15Q7Z3B0 74 aa3.64□□□□□ -1.83
GPNMB-208ENST00000470994 STPG4Q8N801 248 aa3.64□□□□□ -1.83
GPNMB-208ENST00000470994 SPACA4Q8TDM5 124 aa3.64□□□□□ -1.83
GPNMB-208ENST00000470994 CHCHD10Q8WYQ3 142 aaPredicted RBP3.64□□□□□ -1.83
GPNMB-208ENST00000470994 MANBALQ9NQG1 85 aa3.64□□□□□ -1.83
GPNMB-208ENST00000470994 BIN3Q9NQY0 253 aa3.64□□□□□ -1.83
GPNMB-208ENST00000470994 PMCHP20382 165 aa3.63□□□□□ -1.83
GPNMB-208ENST00000470994 XCL1P47992 114 aa3.63□□□□□ -1.83
GPNMB-208ENST00000470994 CIRBPQ14011 172 aaKnown RBP3.63□□□□□ -1.83
GPNMB-208ENST00000470994 ZNF345Q14585 488 aa3.63□□□□□ -1.83
GPNMB-208ENST00000470994 C15orf56Q8N910 161 aa3.63□□□□□ -1.83
GPNMB-208ENST00000470994 C11orf52Q96A22 123 aa3.63□□□□□ -1.83
GPNMB-208ENST00000470994 LINC00526Q96FQ7 95 aa3.63□□□□□ -1.83
GPNMB-208ENST00000470994 BTF3L4Q96K17 158 aa3.63□□□□□ -1.83
GPNMB-208ENST00000470994 PGLYRP4Q96LB8 373 aa3.63□□□□□ -1.83
GPNMB-208ENST00000470994 PLAC8Q9NZF1 115 aa3.63□□□□□ -1.83
GPNMB-208ENST00000470994 DNAH8Q96JB1 4490 aa3.62□□□□□ -1.83
GPNMB-208ENST00000470994 C19orf71A6NCJ1 209 aa3.62□□□□□ -1.83
GPNMB-208ENST00000470994 HMSDA8MTL9 139 aa3.62□□□□□ -1.83
GPNMB-208ENST00000470994 PDE6DO43924 150 aa3.62□□□□□ -1.83
GPNMB-208ENST00000470994 APCSP02743 223 aa3.62□□□□□ -1.83
GPNMB-208ENST00000470994 FGF6P10767 208 aa3.62□□□□□ -1.83
GPNMB-208ENST00000470994 FOXA3P55318 350 aaPredicted RBP3.62□□□□□ -1.83
GPNMB-208ENST00000470994 EIF5AL1Q6IS14 154 aaKnown RBP3.62□□□□□ -1.83
GPNMB-208ENST00000470994 C9orf62Q8N4C0 152 aa3.62□□□□□ -1.83
GPNMB-208ENST00000470994 GATD1Q8NB37 220 aa3.62□□□□□ -1.83
GPNMB-208ENST00000470994 RPL39LQ96EH5 51 aaKnown RBP3.62□□□□□ -1.83
GPNMB-208ENST00000470994 TMEM101Q96IK0 257 aa3.62□□□□□ -1.83
GPNMB-208ENST00000470994 A0A096LNI7 61 aa3.61□□□□□ -1.83
GPNMB-208ENST00000470994 TRAV1-1A0A0B4J248 108 aa3.61□□□□□ -1.83
GPNMB-208ENST00000470994 SDHAF1A6NFY7 115 aa3.61□□□□□ -1.83
GPNMB-208ENST00000470994 CCL25O15444 150 aa3.61□□□□□ -1.83
GPNMB-208ENST00000470994 MEF2BQ02080 365 aaPredicted RBP3.61□□□□□ -1.83
GPNMB-208ENST00000470994 GAGE2BQ13066 116 aa3.61□□□□□ -1.83
GPNMB-208ENST00000470994 SS18Q15532 418 aa3.61□□□□□ -1.83
GPNMB-208ENST00000470994 REG3GQ6UW15 175 aa3.61□□□□□ -1.83
GPNMB-208ENST00000470994 OR5A1Q8NGJ0 315 aa3.61□□□□□ -1.83
GPNMB-208ENST00000470994 RNASE7Q9H1E1 156 aaKnown RBP3.61□□□□□ -1.83
GPNMB-208ENST00000470994 RPP21Q9H633 154 aaKnown RBP3.61□□□□□ -1.83
GPNMB-208ENST00000470994 GVQW2A0A096LPI5 108 aaPredicted RBP3.6□□□□□ -1.83
GPNMB-208ENST00000470994 IGHV1-58A0A0C4DH39 117 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 H7C423 109 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 I3L3M4 83 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 GATCO43716 136 aaKnown RBP3.6□□□□□ -1.83
GPNMB-208ENST00000470994 NCR2O95944 276 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 BCL2P10415 239 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 CTRLP40313 264 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 CEBPGP53567 150 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 PRR3P79522 188 aaKnown RBP3.6□□□□□ -1.83
GPNMB-208ENST00000470994 SYCNQ0VAF6 134 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 TEX261Q6UWH6 196 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 OCC1Q8TAD7 63 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 BORCS7Q96B45 105 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 SMIM12Q96EX1 92 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 CARD19Q96LW7 228 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 LINC01600Q96MT4 127 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 ST20Q9HBF5 79 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 TMEM242Q9NWH2 141 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 LINC00474Q9P2X8 69 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 PKIGQ9Y2B9 76 aa3.6□□□□□ -1.83
GPNMB-208ENST00000470994 LRP1Q07954 4544 aaKnown RBP3.59□□□□□ -1.83
GPNMB-208ENST00000470994 TRBV20OR9-2A0A075B6H5 130 aa3.59□□□□□ -1.83
GPNMB-208ENST00000470994 A0A0J9YXV3 536 aa3.59□□□□□ -1.83
GPNMB-208ENST00000470994 LINC00959A0A1B0GUT2 108 aa3.59□□□□□ -1.83
GPNMB-208ENST00000470994 SPINK6Q6UWN8 80 aa3.59□□□□□ -1.83
GPNMB-208ENST00000470994 Q6ZRP5 223 aa3.59□□□□□ -1.83
GPNMB-208ENST00000470994 MRAP2Q96G30 205 aa3.59□□□□□ -1.83
GPNMB-208ENST00000470994 TRAV13-1A0A0B4J241 112 aa3.58□□□□□ -1.84
GPNMB-208ENST00000470994 FAM231BA6NCW3 169 aa3.58□□□□□ -1.84
GPNMB-208ENST00000470994 A8MWL6 223 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms