RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ANGP03950 147 aaKnown RBP7.91□□□□□ -1.14
SQSTM1-206ENST00000466342 ESDP10768 282 aa7.91□□□□□ -1.14
SQSTM1-206ENST00000466342 TGIF2-C20orf24A0A0A6YYL0 155 aa7.9□□□□□ -1.14
SQSTM1-206ENST00000466342 PRSS47A8MTI9 375 aa7.9□□□□□ -1.14
SQSTM1-206ENST00000466342 PSCAO43653 123 aa7.9□□□□□ -1.14
SQSTM1-206ENST00000466342 OXTP01178 125 aa7.9□□□□□ -1.14
SQSTM1-206ENST00000466342 FCER1GP30273 86 aa7.9□□□□□ -1.14
SQSTM1-206ENST00000466342 Q0VG73 95 aa7.9□□□□□ -1.14
SQSTM1-206ENST00000466342 C20orf203Q8NBC4 194 aa7.9□□□□□ -1.14
SQSTM1-206ENST00000466342 MAP1LC3AQ9H492 121 aa7.9□□□□□ -1.14
SQSTM1-206ENST00000466342 IGLV4-60A0A075B6I1 120 aa7.89□□□□□ -1.15
SQSTM1-206ENST00000466342 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.89□□□□□ -1.15
SQSTM1-206ENST00000466342 IGKV2-29A2NJV5 120 aaPredicted RBP7.89□□□□□ -1.15
SQSTM1-206ENST00000466342 TCAPO15273 167 aa7.89□□□□□ -1.15
SQSTM1-206ENST00000466342 CRPP02741 224 aa7.89□□□□□ -1.15
SQSTM1-206ENST00000466342 AMMECR1LQ6DCA0 310 aa7.89□□□□□ -1.15
SQSTM1-206ENST00000466342 UBE2WQ96B02 151 aa7.89□□□□□ -1.15
SQSTM1-206ENST00000466342 DNAH8Q96JB1 4490 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 FGF6P10767 208 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 ZNF25P17030 456 aaPredicted RBP7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 KIAA1644Q3SXP7 199 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 ENHOQ6UWT2 76 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 LINC00269Q8N2A0 174 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 RMI2Q96E14 147 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 YPEL4Q96NS1 127 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 TM2D2Q9BX73 214 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 MRPL18Q9H0U6 180 aaKnown RBP7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 SMCO4Q9NRQ5 59 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 PRR34Q9NV39 138 aa7.88□□□□□ -1.15
SQSTM1-206ENST00000466342 LRCOL1A6NCL2 159 aa7.87□□□□□ -1.15
SQSTM1-206ENST00000466342 REG3AQ06141 175 aa7.87□□□□□ -1.15
SQSTM1-206ENST00000466342 MIAQ16674 131 aa7.87□□□□□ -1.15
SQSTM1-206ENST00000466342 RNASEKQ6P5S7 137 aaKnown RBP7.87□□□□□ -1.15
SQSTM1-206ENST00000466342 CLPSL2Q6UWE3 100 aa7.87□□□□□ -1.15
SQSTM1-206ENST00000466342 MRPL52Q86TS9 123 aaKnown RBP7.87□□□□□ -1.15
SQSTM1-206ENST00000466342 COX11Q9Y6N1 276 aa7.87□□□□□ -1.15
SQSTM1-206ENST00000466342 IGKV2D-24A0A075B6R9 120 aa7.86□□□□□ -1.15
SQSTM1-206ENST00000466342 LOC389332A0A1B0GUA5 103 aa7.86□□□□□ -1.15
SQSTM1-206ENST00000466342 CBLN2Q8IUK8 224 aa7.86□□□□□ -1.15
SQSTM1-206ENST00000466342 Q8N8P6 123 aa7.86□□□□□ -1.15
SQSTM1-206ENST00000466342 NTN5Q8WTR8 489 aaPredicted RBP7.86□□□□□ -1.15
SQSTM1-206ENST00000466342 TMEM18Q96B42 140 aa7.86□□□□□ -1.15
SQSTM1-206ENST00000466342 RAB5AP20339 215 aa7.85□□□□□ -1.15
SQSTM1-206ENST00000466342 SMAGPQ0VAQ4 97 aa7.85□□□□□ -1.15
SQSTM1-206ENST00000466342 FABP9Q0Z7S8 132 aa7.85□□□□□ -1.15
SQSTM1-206ENST00000466342 OR5A1Q8NGJ0 315 aa7.85□□□□□ -1.15
SQSTM1-206ENST00000466342 TMEM101Q96IK0 257 aa7.85□□□□□ -1.15
SQSTM1-206ENST00000466342 ALKBH7Q9BT30 221 aaPredicted RBP7.85□□□□□ -1.15
SQSTM1-206ENST00000466342 C1orf43Q9BWL3 253 aa7.85□□□□□ -1.15
SQSTM1-206ENST00000466342 TRAPPC1Q9Y5R8 145 aa7.85□□□□□ -1.15
SQSTM1-206ENST00000466342 K7EMI3 77 aa7.84□□□□□ -1.15
SQSTM1-206ENST00000466342 NXT2Q9NPJ8 142 aaKnown RBP7.84□□□□□ -1.15
SQSTM1-206ENST00000466342 FAM30AQ9NZY2 134 aa7.84□□□□□ -1.15
SQSTM1-206ENST00000466342 UBE2D4Q9Y2X8 147 aa7.84□□□□□ -1.15
SQSTM1-206ENST00000466342 CSDC2Q9Y534 153 aaKnown RBP7.84□□□□□ -1.15
SQSTM1-206ENST00000466342 IGLV5-52A0A0A0MRZ9 124 aa7.83□□□□□ -1.16
SQSTM1-206ENST00000466342 TRAV8-4A0A0B4J246 113 aa7.83□□□□□ -1.16
SQSTM1-206ENST00000466342 IFI27P40305 119 aaPredicted RBP7.83□□□□□ -1.16
SQSTM1-206ENST00000466342 RPL39P62891 51 aaKnown RBP7.83□□□□□ -1.16
SQSTM1-206ENST00000466342 DGAT2L7PQ6IED9 249 aa7.83□□□□□ -1.16
SQSTM1-206ENST00000466342 LINC00528Q8N1L1 170 aa7.83□□□□□ -1.16
SQSTM1-206ENST00000466342 Q8N814 137 aa7.83□□□□□ -1.16
SQSTM1-206ENST00000466342 TIMM21Q9BVV7 248 aa7.83□□□□□ -1.16
SQSTM1-206ENST00000466342 ATP6V1G1O75348 118 aa7.82□□□□□ -1.16
SQSTM1-206ENST00000466342 ORMDL2Q53FV1 153 aa7.82□□□□□ -1.16
SQSTM1-206ENST00000466342 ZNF664Q8N3J9 261 aa7.82□□□□□ -1.16
SQSTM1-206ENST00000466342 CDC42SE2Q9NRR3 84 aa7.82□□□□□ -1.16
SQSTM1-206ENST00000466342 LRP2P98164 4655 aa7.81□□□□□ -1.16
SQSTM1-206ENST00000466342 IGLV10-54A0A075B6I4 117 aa7.81□□□□□ -1.16
SQSTM1-206ENST00000466342 IGKV3OR2-268A0A0C4DH90 116 aa7.81□□□□□ -1.16
SQSTM1-206ENST00000466342 KRTAP26-1Q6PEX3 210 aa7.81□□□□□ -1.16
SQSTM1-206ENST00000466342 PRSS3P2Q8NHM4 247 aa7.81□□□□□ -1.16
SQSTM1-206ENST00000466342 SPANXA1Q9NS26 97 aa7.81□□□□□ -1.16
SQSTM1-206ENST00000466342 LINC01546A6NGU7 62 aa7.8□□□□□ -1.16
SQSTM1-206ENST00000466342 WFDC2Q14508 124 aa7.8□□□□□ -1.16
SQSTM1-206ENST00000466342 Q6ZUT4 128 aa7.8□□□□□ -1.16
SQSTM1-206ENST00000466342 BAALCQ8WXS3 180 aa7.8□□□□□ -1.16
SQSTM1-206ENST00000466342 C2orf66Q6UXQ4 117 aa7.79□□□□□ -1.16
SQSTM1-206ENST00000466342 C18orf32Q8TCD1 76 aa7.79□□□□□ -1.16
SQSTM1-206ENST00000466342 CYSLTR1Q9Y271 337 aa7.79□□□□□ -1.16
SQSTM1-206ENST00000466342 PYGO1Q9Y3Y4 419 aa7.79□□□□□ -1.16
SQSTM1-206ENST00000466342 LINC00959A0A1B0GUT2 108 aa7.78□□□□□ -1.16
SQSTM1-206ENST00000466342 COLCA2A8K830 154 aa7.78□□□□□ -1.16
SQSTM1-206ENST00000466342 LECT2O14960 151 aa7.78□□□□□ -1.16
SQSTM1-206ENST00000466342 G0S2P27469 103 aa7.78□□□□□ -1.16
SQSTM1-206ENST00000466342 MRPS36P82909 103 aaKnown RBP7.78□□□□□ -1.16
SQSTM1-206ENST00000466342 RNASE13Q5GAN3 156 aaKnown RBP7.78□□□□□ -1.16
SQSTM1-206ENST00000466342 FA2HQ7L5A8 372 aa7.78□□□□□ -1.16
SQSTM1-206ENST00000466342 FAM104AQ969W3 186 aa7.78□□□□□ -1.16
SQSTM1-206ENST00000466342 PKHD1L1Q86WI1 4243 aa7.77□□□□□ -1.17
SQSTM1-206ENST00000466342 SCO1O75880 301 aa7.77□□□□□ -1.17
SQSTM1-206ENST00000466342 SS18Q15532 418 aa7.77□□□□□ -1.17
SQSTM1-206ENST00000466342 CHCHD10Q8WYQ3 142 aaPredicted RBP7.77□□□□□ -1.17
SQSTM1-206ENST00000466342 OPRPNQ99935 248 aaPredicted RBP7.77□□□□□ -1.17
SQSTM1-206ENST00000466342 IGLV4-3A0A075B6K6 122 aa7.76□□□□□ -1.17
SQSTM1-206ENST00000466342 GAGE12HA6NDE8 117 aa7.76□□□□□ -1.17
SQSTM1-206ENST00000466342 USP17L23D6RBM5 183 aa7.76□□□□□ -1.17
SQSTM1-206ENST00000466342 CCL25O15444 150 aa7.76□□□□□ -1.17
SQSTM1-206ENST00000466342 KRTAP10-4P60372 401 aaPredicted RBP7.76□□□□□ -1.17
SQSTM1-206ENST00000466342 C14orf177Q52M58 125 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms