RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 AP5S1Q9NUS5 200 aa14.89□□□□□ -0.03
PTPN4-208ENST00000460289 CNBPP62633 177 aaKnown RBP14.88□□□□□ -0.03
PTPN4-208ENST00000460289 C20orf78Q9BR46 151 aa14.88□□□□□ -0.03
PTPN4-208ENST00000460289 TRBV24-1A0A075B6N3 115 aa14.87□□□□□ -0.03
PTPN4-208ENST00000460289 SMAGPQ0VAQ4 97 aa14.87□□□□□ -0.03
PTPN4-208ENST00000460289 CLLU1Q5K131 121 aa14.87□□□□□ -0.03
PTPN4-208ENST00000460289 A0A1B0GXF2 115 aa14.86□□□□□ -0.03
PTPN4-208ENST00000460289 PLA2G1BP04054 148 aaKnown RBP14.86□□□□□ -0.03
PTPN4-208ENST00000460289 CDC42SE2Q9NRR3 84 aa14.86□□□□□ -0.03
PTPN4-208ENST00000460289 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.85□□□□□ -0.03
PTPN4-208ENST00000460289 ATP5L2Q7Z4Y8 100 aa14.85□□□□□ -0.03
PTPN4-208ENST00000460289 LINC00528Q8N1L1 170 aa14.85□□□□□ -0.03
PTPN4-208ENST00000460289 CIRBP-AS1Q8TBR5 109 aa14.85□□□□□ -0.03
PTPN4-208ENST00000460289 ANAPC16Q96DE5 110 aa14.85□□□□□ -0.03
PTPN4-208ENST00000460289 SRRM2Q9UQ35 2752 aaKnown RBP14.85□□□□□ -0.03
PTPN4-208ENST00000460289 VPS13BQ7Z7G8 4022 aa14.84□□□□□ -0.03
PTPN4-208ENST00000460289 TCAPO15273 167 aa14.84□□□□□ -0.03
PTPN4-208ENST00000460289 PPBPP02775 128 aa14.84□□□□□ -0.03
PTPN4-208ENST00000460289 MT-ND4LP03901 98 aa14.84□□□□□ -0.03
PTPN4-208ENST00000460289 RPL32P62910 135 aaKnown RBP14.84□□□□□ -0.03
PTPN4-208ENST00000460289 ZNF664Q8N3J9 261 aa14.84□□□□□ -0.03
PTPN4-208ENST00000460289 LINC00959A0A1B0GUT2 108 aa14.83□□□□□ -0.04
PTPN4-208ENST00000460289 TNFRSF6BO95407 300 aa14.83□□□□□ -0.04
PTPN4-208ENST00000460289 CSDC2Q9Y534 153 aaKnown RBP14.83□□□□□ -0.04
PTPN4-208ENST00000460289 D6R8Y8 96 aa14.82□□□□□ -0.04
PTPN4-208ENST00000460289 SS18Q15532 418 aa14.82□□□□□ -0.04
PTPN4-208ENST00000460289 SDIM1Q6ZPB5 146 aa14.82□□□□□ -0.04
PTPN4-208ENST00000460289 C15orf56Q8N910 161 aa14.82□□□□□ -0.04
PTPN4-208ENST00000460289 TMEM18Q96B42 140 aa14.82□□□□□ -0.04
PTPN4-208ENST00000460289 PHOX2AO14813 284 aa14.81□□□□□ -0.04
PTPN4-208ENST00000460289 IGHV3-64A0A075B6Q5 118 aa14.8□□□□□ -0.04
PTPN4-208ENST00000460289 CCL25O15444 150 aa14.8□□□□□ -0.04
PTPN4-208ENST00000460289 XCL1P47992 114 aa14.8□□□□□ -0.04
PTPN4-208ENST00000460289 FOXI1Q12951 378 aa14.8□□□□□ -0.04
PTPN4-208ENST00000460289 SLPIP03973 132 aa14.79□□□□□ -0.04
PTPN4-208ENST00000460289 UBE2D4Q9Y2X8 147 aa14.79□□□□□ -0.04
PTPN4-208ENST00000460289 ORMDL3Q8N138 153 aa14.78□□□□□ -0.04
PTPN4-208ENST00000460289 SMIM2Q9BVW6 85 aa14.78□□□□□ -0.04
PTPN4-208ENST00000460289 HIGD2BQ4VC39 106 aa14.77□□□□□ -0.05
PTPN4-208ENST00000460289 UQCC3Q6UW78 93 aa14.77□□□□□ -0.05
PTPN4-208ENST00000460289 CD164L2Q6UWJ8 174 aa14.77□□□□□ -0.05
PTPN4-208ENST00000460289 TMEM136Q6ZRR5 245 aa14.77□□□□□ -0.05
PTPN4-208ENST00000460289 TIMM21Q9BVV7 248 aa14.77□□□□□ -0.05
PTPN4-208ENST00000460289 GVQW2A0A096LPI5 108 aaPredicted RBP14.76□□□□□ -0.05
PTPN4-208ENST00000460289 C1orf196B1AJZ1 125 aa14.76□□□□□ -0.05
PTPN4-208ENST00000460289 NPYP01303 97 aa14.76□□□□□ -0.05
PTPN4-208ENST00000460289 IFITM2Q01629 132 aa14.75□□□□□ -0.05
PTPN4-208ENST00000460289 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.75□□□□□ -0.05
PTPN4-208ENST00000460289 IGHV1-58A0A0C4DH39 117 aa14.74□□□□□ -0.05
PTPN4-208ENST00000460289 PRELID3AQ96N28 172 aa14.74□□□□□ -0.05
PTPN4-208ENST00000460289 DPH3Q96FX2 82 aa14.73□□□□□ -0.05
PTPN4-208ENST00000460289 RAB5AP20339 215 aa14.72□□□□□ -0.05
PTPN4-208ENST00000460289 LAMTOR2Q9Y2Q5 125 aa14.72□□□□□ -0.05
PTPN4-208ENST00000460289 TMEM218A2RU14 115 aa14.71□□□□□ -0.05
PTPN4-208ENST00000460289 CIRBPQ14011 172 aaKnown RBP14.71□□□□□ -0.05
PTPN4-208ENST00000460289 IMMP2LQ96T52 175 aa14.71□□□□□ -0.05
PTPN4-208ENST00000460289 PANO1I0J062 215 aa14.7□□□□□ -0.06
PTPN4-208ENST00000460289 RPL39P62891 51 aaKnown RBP14.7□□□□□ -0.06
PTPN4-208ENST00000460289 RNASE13Q5GAN3 156 aaKnown RBP14.7□□□□□ -0.06
PTPN4-208ENST00000460289 SPANXA1Q9NS26 97 aa14.7□□□□□ -0.06
PTPN4-208ENST00000460289 TRAV13-1A0A0B4J241 112 aa14.69□□□□□ -0.06
PTPN4-208ENST00000460289 PRSS47A8MTI9 375 aa14.69□□□□□ -0.06
PTPN4-208ENST00000460289 Q6ZUT4 128 aa14.69□□□□□ -0.06
PTPN4-208ENST00000460289 ZNF561-AS1K7EIQ3 104 aa14.68□□□□□ -0.06
PTPN4-208ENST00000460289 MALP21145 153 aa14.68□□□□□ -0.06
PTPN4-208ENST00000460289 COX6A2Q02221 97 aa14.68□□□□□ -0.06
PTPN4-208ENST00000460289 CTDSP1Q9GZU7 261 aa14.68□□□□□ -0.06
PTPN4-208ENST00000460289 FLG2Q5D862 2391 aaPredicted RBP14.68□□□□□ -0.06
PTPN4-208ENST00000460289 COX7A2LO14548 114 aa14.67□□□□□ -0.06
PTPN4-208ENST00000460289 ADCYAP1P18509 176 aa14.67□□□□□ -0.06
PTPN4-208ENST00000460289 MAP1LC3AQ9H492 121 aa14.67□□□□□ -0.06
PTPN4-208ENST00000460289 MRPS36P82909 103 aaKnown RBP14.66□□□□□ -0.06
PTPN4-208ENST00000460289 PKIGQ9Y2B9 76 aa14.66□□□□□ -0.06
PTPN4-208ENST00000460289 SPACA4Q8TDM5 124 aa14.65□□□□□ -0.06
PTPN4-208ENST00000460289 SEC11CQ9BY50 192 aa14.65□□□□□ -0.06
PTPN4-208ENST00000460289 LOC389332A0A1B0GUA5 103 aa14.64□□□□□ -0.07
PTPN4-208ENST00000460289 CHTF8P0CG12 524 aa14.64□□□□□ -0.07
PTPN4-208ENST00000460289 KRTAP10-4P60372 401 aaPredicted RBP14.64□□□□□ -0.07
PTPN4-208ENST00000460289 RPL37AP61513 92 aaKnown RBP14.64□□□□□ -0.07
PTPN4-208ENST00000460289 PRSS3P2Q8NHM4 247 aa14.64□□□□□ -0.07
PTPN4-208ENST00000460289 MYCBP2O75592 4640 aa14.63□□□□□ -0.07
PTPN4-208ENST00000460289 A0A087WYN8 130 aa14.63□□□□□ -0.07
PTPN4-208ENST00000460289 IFI27P40305 119 aaPredicted RBP14.63□□□□□ -0.07
PTPN4-208ENST00000460289 FAM104AQ969W3 186 aa14.63□□□□□ -0.07
PTPN4-208ENST00000460289 LINC00526Q96FQ7 95 aa14.63□□□□□ -0.07
PTPN4-208ENST00000460289 TRAV9-1A0A075B6T8 112 aa14.62□□□□□ -0.07
PTPN4-208ENST00000460289 APOMO95445 188 aa14.62□□□□□ -0.07
PTPN4-208ENST00000460289 SYCNQ0VAF6 134 aa14.62□□□□□ -0.07
PTPN4-208ENST00000460289 Q8N8P6 123 aa14.62□□□□□ -0.07
PTPN4-208ENST00000460289 CARD19Q96LW7 228 aa14.62□□□□□ -0.07
PTPN4-208ENST00000460289 OPRPNQ99935 248 aaPredicted RBP14.62□□□□□ -0.07
PTPN4-208ENST00000460289 PYGO1Q9Y3Y4 419 aa14.62□□□□□ -0.07
PTPN4-208ENST00000460289 C5orf38Q86SI9 138 aa14.61□□□□□ -0.07
PTPN4-208ENST00000460289 COMMD7Q86VX2 200 aa14.61□□□□□ -0.07
PTPN4-208ENST00000460289 DMBT1Q9UGM3 2413 aaPredicted RBP14.61□□□□□ -0.07
PTPN4-208ENST00000460289 LINC00474Q9P2X8 69 aa14.6□□□□□ -0.07
PTPN4-208ENST00000460289 IGLV4-69A0A075B6H9 119 aa14.59□□□□□ -0.07
PTPN4-208ENST00000460289 IGKV2-24A0A0C4DH68 120 aa14.59□□□□□ -0.07
PTPN4-208ENST00000460289 IFITM10A6NMD0 228 aa14.59□□□□□ -0.07
PTPN4-208ENST00000460289 K7EMI3 77 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms