RNA–Protein interactions for RNA: ENST00000459667.1

VARS-218, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-218ENST00000459667 TMEM101Q96IK0 257 aa13.61□□□□□ -0.23
VARS-218ENST00000459667 PRELID3AQ96N28 172 aa13.61□□□□□ -0.23
VARS-218ENST00000459667 USP17L23D6RBM5 183 aa13.6□□□□□ -0.23
VARS-218ENST00000459667 NPYP01303 97 aa13.6□□□□□ -0.23
VARS-218ENST00000459667 APOC3P02656 99 aa13.6□□□□□ -0.23
VARS-218ENST00000459667 SMIM2Q9BVW6 85 aa13.6□□□□□ -0.23
VARS-218ENST00000459667 LAMTOR2Q9Y2Q5 125 aa13.6□□□□□ -0.23
VARS-218ENST00000459667 XGP55808 180 aa13.59□□□□□ -0.23
VARS-218ENST00000459667 SVBPQ8N300 66 aa13.59□□□□□ -0.23
VARS-218ENST00000459667 KRTAP17-1Q9BYP8 105 aa13.59□□□□□ -0.23
VARS-218ENST00000459667 IGKV3OR2-268A0A0C4DH90 116 aa13.58□□□□□ -0.24
VARS-218ENST00000459667 SNAPINO95295 136 aa13.58□□□□□ -0.24
VARS-218ENST00000459667 Q8N1X5 172 aa13.58□□□□□ -0.24
VARS-218ENST00000459667 OR5A1Q8NGJ0 315 aa13.58□□□□□ -0.24
VARS-218ENST00000459667 TMEM18Q96B42 140 aa13.58□□□□□ -0.24
VARS-218ENST00000459667 PCLOQ9Y6V0 5065 aa13.57□□□□□ -0.24
VARS-218ENST00000459667 COX19Q49B96 90 aa13.56□□□□□ -0.24
VARS-218ENST00000459667 DGAT2L7PQ6IED9 249 aa13.56□□□□□ -0.24
VARS-218ENST00000459667 MRPL52Q86TS9 123 aaKnown RBP13.56□□□□□ -0.24
VARS-218ENST00000459667 MAP1LC3AQ9H492 121 aa13.56□□□□□ -0.24
VARS-218ENST00000459667 KRTAP4-5Q9BYR2 181 aa13.55□□□□□ -0.24
VARS-218ENST00000459667 RAB5AP20339 215 aa13.54□□□□□ -0.24
VARS-218ENST00000459667 LINC01620Q4KN68 170 aa13.54□□□□□ -0.24
VARS-218ENST00000459667 PRSS1P07477 247 aa13.53□□□□□ -0.24
VARS-218ENST00000459667 HAMPP81172 84 aa13.53□□□□□ -0.24
VARS-218ENST00000459667 GNB1LQ9BYB4 327 aa13.53□□□□□ -0.24
VARS-218ENST00000459667 ABCA13Q86UQ4 5058 aa13.53□□□□□ -0.24
VARS-218ENST00000459667 FAM30AQ9NZY2 134 aa13.52□□□□□ -0.25
VARS-218ENST00000459667 GAGE12HA6NDE8 117 aa13.51□□□□□ -0.25
VARS-218ENST00000459667 PRSS47A8MTI9 375 aa13.51□□□□□ -0.25
VARS-218ENST00000459667 MT-ND6P03923 174 aa13.51□□□□□ -0.25
VARS-218ENST00000459667 CSDC2Q9Y534 153 aaKnown RBP13.51□□□□□ -0.25
VARS-218ENST00000459667 LOC389332A0A1B0GUA5 103 aa13.5□□□□□ -0.25
VARS-218ENST00000459667 ZNF664Q8N3J9 261 aa13.5□□□□□ -0.25
VARS-218ENST00000459667 CHCHD10Q8WYQ3 142 aaPredicted RBP13.5□□□□□ -0.25
VARS-218ENST00000459667 TIMM21Q9BVV7 248 aa13.5□□□□□ -0.25
VARS-218ENST00000459667 CDC42SE2Q9NRR3 84 aa13.5□□□□□ -0.25
VARS-218ENST00000459667 Q6ZSA8 131 aa13.49□□□□□ -0.25
VARS-218ENST00000459667 UBE2D4Q9Y2X8 147 aa13.49□□□□□ -0.25
VARS-218ENST00000459667 DNAH8Q96JB1 4490 aa13.49□□□□□ -0.25
VARS-218ENST00000459667 Q8N8P6 123 aa13.48□□□□□ -0.25
VARS-218ENST00000459667 hDV102S1A0JD36 115 aa13.47□□□□□ -0.25
VARS-218ENST00000459667 KIAA1644Q3SXP7 199 aa13.47□□□□□ -0.25
VARS-218ENST00000459667 NXT2Q9NPJ8 142 aaKnown RBP13.47□□□□□ -0.25
VARS-218ENST00000459667 LINC00959A0A1B0GUT2 108 aa13.46□□□□□ -0.25
VARS-218ENST00000459667 K7EMI3 77 aa13.46□□□□□ -0.25
VARS-218ENST00000459667 SS18Q15532 418 aa13.46□□□□□ -0.25
VARS-218ENST00000459667 SPANXA1Q9NS26 97 aa13.46□□□□□ -0.25
VARS-218ENST00000459667 EPM2AB3EWF7 344 aa13.45□□□□□ -0.26
VARS-218ENST00000459667 SMR3BP02814 79 aaPredicted RBP13.45□□□□□ -0.26
VARS-218ENST00000459667 XCL1P47992 114 aa13.45□□□□□ -0.26
VARS-218ENST00000459667 RPL39P62891 51 aaKnown RBP13.45□□□□□ -0.26
VARS-218ENST00000459667 FABP9Q0Z7S8 132 aa13.45□□□□□ -0.26
VARS-218ENST00000459667 ORMDL2Q53FV1 153 aa13.45□□□□□ -0.26
VARS-218ENST00000459667 MRPL18Q9H0U6 180 aaKnown RBP13.45□□□□□ -0.26
VARS-218ENST00000459667 CCL25O15444 150 aa13.44□□□□□ -0.26
VARS-218ENST00000459667 FOXI1Q12951 378 aa13.44□□□□□ -0.26
VARS-218ENST00000459667 CFAP161Q6P656 301 aa13.44□□□□□ -0.26
VARS-218ENST00000459667 SLC7A5P1Q8MH63 180 aa13.44□□□□□ -0.26
VARS-218ENST00000459667 C15orf56Q8N910 161 aa13.44□□□□□ -0.26
VARS-218ENST00000459667 TGIF2-C20orf24A0A0A6YYL0 155 aa13.43□□□□□ -0.26
VARS-218ENST00000459667 IFI27P40305 119 aaPredicted RBP13.43□□□□□ -0.26
VARS-218ENST00000459667 Q5VSD8 79 aa13.43□□□□□ -0.26
VARS-218ENST00000459667 C9orf163Q8N9P6 203 aa13.43□□□□□ -0.26
VARS-218ENST00000459667 AP5S1Q9NUS5 200 aa13.43□□□□□ -0.26
VARS-218ENST00000459667 G0S2P27469 103 aa13.42□□□□□ -0.26
VARS-218ENST00000459667 CNBPP62633 177 aaKnown RBP13.42□□□□□ -0.26
VARS-218ENST00000459667 RNASE13Q5GAN3 156 aaKnown RBP13.42□□□□□ -0.26
VARS-218ENST00000459667 Q6ZUT4 128 aa13.42□□□□□ -0.26
VARS-218ENST00000459667 C1orf196B1AJZ1 125 aa13.41□□□□□ -0.26
VARS-218ENST00000459667 PRSS3P2Q8NHM4 247 aa13.41□□□□□ -0.26
VARS-218ENST00000459667 CYSLTR1Q9Y271 337 aa13.41□□□□□ -0.26
VARS-218ENST00000459667 MRPS36P82909 103 aaKnown RBP13.4□□□□□ -0.26
VARS-218ENST00000459667 SCXQ7RTU7 201 aa13.4□□□□□ -0.26
VARS-218ENST00000459667 ALKBH7Q9BT30 221 aaPredicted RBP13.4□□□□□ -0.26
VARS-218ENST00000459667 PYGO1Q9Y3Y4 419 aa13.4□□□□□ -0.26
VARS-218ENST00000459667 TRAPPC1Q9Y5R8 145 aa13.4□□□□□ -0.26
VARS-218ENST00000459667 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.39□□□□□ -0.27
VARS-218ENST00000459667 HIGD2BQ4VC39 106 aa13.39□□□□□ -0.27
VARS-218ENST00000459667 CD164L2Q6UWJ8 174 aa13.39□□□□□ -0.27
VARS-218ENST00000459667 TRAV13-1A0A0B4J241 112 aa13.38□□□□□ -0.27
VARS-218ENST00000459667 C2orf66Q6UXQ4 117 aa13.38□□□□□ -0.27
VARS-218ENST00000459667 CHAC1Q9BUX1 264 aa13.38□□□□□ -0.27
VARS-218ENST00000459667 SMCO4Q9NRQ5 59 aa13.38□□□□□ -0.27
VARS-218ENST00000459667 FAT1Q14517 4588 aa13.37□□□□□ -0.27
VARS-218ENST00000459667 GVQW2A0A096LPI5 108 aaPredicted RBP13.37□□□□□ -0.27
VARS-218ENST00000459667 FAM229AH3BQW9 127 aa13.37□□□□□ -0.27
VARS-218ENST00000459667 SLPIP03973 132 aa13.37□□□□□ -0.27
VARS-218ENST00000459667 IFITM10A6NMD0 228 aa13.36□□□□□ -0.27
VARS-218ENST00000459667 IGHV3-64A0A075B6Q5 118 aa13.35□□□□□ -0.27
VARS-218ENST00000459667 IGHV1-58A0A0C4DH39 117 aa13.35□□□□□ -0.27
VARS-218ENST00000459667 Q6ZN92 141 aa13.35□□□□□ -0.27
VARS-218ENST00000459667 FA2HQ7L5A8 372 aa13.35□□□□□ -0.27
VARS-218ENST00000459667 OPRPNQ99935 248 aaPredicted RBP13.35□□□□□ -0.27
VARS-218ENST00000459667 SDIM1Q6ZPB5 146 aa13.34□□□□□ -0.27
VARS-218ENST00000459667 CIRBP-AS1Q8TBR5 109 aa13.34□□□□□ -0.27
VARS-218ENST00000459667 FAM104AQ969W3 186 aa13.34□□□□□ -0.27
VARS-218ENST00000459667 TMEM141Q96I45 108 aa13.34□□□□□ -0.27
VARS-218ENST00000459667 IGLV4-3A0A075B6K6 122 aa13.33□□□□□ -0.28
VARS-218ENST00000459667 COX7A2LO14548 114 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms