RNA–Protein interactions for RNA: ENST00000452489.6

PTPA-223, Transcript of protein phosphatase 2 phosphatase activator, human

TSL 1 (best) BASIC

Gene PTPA, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPA-223	ENST00000452489	XCL1	P47992	114 aa		13.48	□□□□□ -0.25
PTPA-223	ENST00000452489	OBSCN-AS1	Q96MR7	158 aa		13.48	□□□□□ -0.25
PTPA-223	ENST00000452489	LINC00467	Q9BRT7	94 aa		13.48	□□□□□ -0.25
PTPA-223	ENST00000452489	XCL2	Q9UBD3	114 aa		13.48	□□□□□ -0.25
PTPA-223	ENST00000452489	C16orf95	Q9H693	158 aa		13.47	□□□□□ -0.25
PTPA-223	ENST00000452489	SERP1	Q9Y6X1	66 aa		13.47	□□□□□ -0.25
PTPA-223	ENST00000452489	EDN2	P20800	178 aa		13.47	□□□□□ -0.25
PTPA-223	ENST00000452489	FAM19A1	Q7Z5A9	133 aa		13.47	□□□□□ -0.25
PTPA-223	ENST00000452489	PSMB8	P28062	276 aa		13.46	□□□□□ -0.26
PTPA-223	ENST00000452489	FP248	Q71RG6	208 aa	Predicted RBP	13.45	□□□□□ -0.26
PTPA-223	ENST00000452489	RHPN1-AS1	Q9BWJ2	59 aa		13.45	□□□□□ -0.26
PTPA-223	ENST00000452489	APC2	O95996	2303 aa		13.45	□□□□□ -0.26
PTPA-223	ENST00000452489	IGLV5-45	A0A087WSX0	123 aa		13.45	□□□□□ -0.26
PTPA-223	ENST00000452489	LINC00337	Q8N6G1	96 aa		13.45	□□□□□ -0.26
PTPA-223	ENST00000452489	IGHV3-38	A0A0C4DH36	116 aa		13.44	□□□□□ -0.26
PTPA-223	ENST00000452489	IGLV5-39	A0A0G2JS06	123 aa		13.44	□□□□□ -0.26
PTPA-223	ENST00000452489		H7BZZ5	65 aa		13.44	□□□□□ -0.26
PTPA-223	ENST00000452489	PRO3102	Q9H379	93 aa		13.44	□□□□□ -0.26
PTPA-223	ENST00000452489	IGHV3-11	P01762	117 aa		13.44	□□□□□ -0.26
PTPA-223	ENST00000452489	COPS9	Q8WXC6	57 aa		13.44	□□□□□ -0.26
PTPA-223	ENST00000452489	NDUFA4	O00483	81 aa		13.43	□□□□□ -0.26
PTPA-223	ENST00000452489	SLPI	P03973	132 aa		13.43	□□□□□ -0.26
PTPA-223	ENST00000452489	KNCN	A6PVL3	124 aa		13.43	□□□□□ -0.26
PTPA-223	ENST00000452489	IGHV1OR15-1	A0A075B7D0	117 aa		13.42	□□□□□ -0.26
PTPA-223	ENST00000452489	CRP	P02741	224 aa		13.42	□□□□□ -0.26
PTPA-223	ENST00000452489	ENHO	Q6UWT2	76 aa		13.42	□□□□□ -0.26
PTPA-223	ENST00000452489	MINOS1-NBL1	R4GNA1	71 aa		13.42	□□□□□ -0.26
PTPA-223	ENST00000452489	SPTBN1	Q01082	2364 aa	Known RBP	13.42	□□□□□ -0.26
PTPA-223	ENST00000452489	LECT2	O14960	151 aa		13.41	□□□□□ -0.26
PTPA-223	ENST00000452489	LYPD5	Q6UWN5	251 aa		13.41	□□□□□ -0.26
PTPA-223	ENST00000452489	SMIM11B	Q8TCY0	68 aa		13.41	□□□□□ -0.26
PTPA-223	ENST00000452489	SMIM1	B2RUZ4	78 aa		13.41	□□□□□ -0.26
PTPA-223	ENST00000452489	SPINK13	Q1W4C9	94 aa		13.41	□□□□□ -0.26
PTPA-223	ENST00000452489		Q6ZSN1	163 aa		13.41	□□□□□ -0.26
PTPA-223	ENST00000452489		A0A0U1RQV1	116 aa		13.4	□□□□□ -0.26
PTPA-223	ENST00000452489	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	13.4	□□□□□ -0.26
PTPA-223	ENST00000452489	SEC61G	P60059	68 aa		13.4	□□□□□ -0.26
PTPA-223	ENST00000452489	IGKV2-28	A0A075B6P5	120 aa		13.4	□□□□□ -0.26
PTPA-223	ENST00000452489	IGHV3OR16-12	A0A075B7B8	117 aa		13.4	□□□□□ -0.26
PTPA-223	ENST00000452489	TRAV13-2	A0A0B4J235	113 aa		13.4	□□□□□ -0.26
PTPA-223	ENST00000452489	IGKV2D-28	P01615	120 aa		13.4	□□□□□ -0.26
PTPA-223	ENST00000452489	HTN1	P15515	57 aa		13.39	□□□□□ -0.27
PTPA-223	ENST00000452489	LINC00242	Q5T6M2	205 aa		13.39	□□□□□ -0.27
PTPA-223	ENST00000452489	MIR7-3HG	Q8N6C7	128 aa		13.39	□□□□□ -0.27
PTPA-223	ENST00000452489	LINC00474	Q9P2X8	69 aa		13.38	□□□□□ -0.27
PTPA-223	ENST00000452489	SS18	Q15532	418 aa		13.37	□□□□□ -0.27
PTPA-223	ENST00000452489	OVOL2	Q9BRP0	275 aa		13.37	□□□□□ -0.27
PTPA-223	ENST00000452489	ZFP36	P26651	326 aa	Known RBP	13.37	□□□□□ -0.27
PTPA-223	ENST00000452489	C5orf56	Q8N8D9	126 aa		13.37	□□□□□ -0.27
PTPA-223	ENST00000452489	CCK	P06307	115 aa		13.36	□□□□□ -0.27
PTPA-223	ENST00000452489	BRK1	Q8WUW1	75 aa		13.36	□□□□□ -0.27
PTPA-223	ENST00000452489	DGAT2L7P	Q6IED9	249 aa		13.36	□□□□□ -0.27
PTPA-223	ENST00000452489	PRM2	P04554	102 aa		13.35	□□□□□ -0.27
PTPA-223	ENST00000452489	PTPRZ1	P23471	2315 aa	Predicted RBP	13.35	□□□□□ -0.27
PTPA-223	ENST00000452489	SMIM26	A0A096LP01	95 aa		13.35	□□□□□ -0.27
PTPA-223	ENST00000452489	PF4	P02776	101 aa		13.35	□□□□□ -0.27
PTPA-223	ENST00000452489	SAA4	P35542	130 aa		13.35	□□□□□ -0.27
PTPA-223	ENST00000452489	SNURF	Q9Y675	71 aa		13.35	□□□□□ -0.27
PTPA-223	ENST00000452489	AKAP13	Q12802	2813 aa		13.34	□□□□□ -0.27
PTPA-223	ENST00000452489	SND1-IT1	Q9HBX3	110 aa		13.34	□□□□□ -0.27
PTPA-223	ENST00000452489		V9GYY9	64 aa		13.34	□□□□□ -0.27
PTPA-223	ENST00000452489	BSN	Q9UPA5	3926 aa		13.34	□□□□□ -0.27
PTPA-223	ENST00000452489	CDSN	Q15517	529 aa		13.33	□□□□□ -0.28
PTPA-223	ENST00000452489	RPL36A	P83881	106 aa	Known RBP	13.33	□□□□□ -0.28
PTPA-223	ENST00000452489	C19orf54	Q5BKX5	351 aa		13.33	□□□□□ -0.28
PTPA-223	ENST00000452489	RPL36AL	Q969Q0	106 aa	Known RBP	13.33	□□□□□ -0.28
PTPA-223	ENST00000452489	C1orf195	Q5TG92	126 aa		13.32	□□□□□ -0.28
PTPA-223	ENST00000452489	RMI2	Q96E14	147 aa		13.32	□□□□□ -0.28
PTPA-223	ENST00000452489	DOPEY2	Q9Y3R5	2298 aa		13.31	□□□□□ -0.28
PTPA-223	ENST00000452489	LINC01560	Q8TB33	94 aa		13.31	□□□□□ -0.28
PTPA-223	ENST00000452489	SIRPD	Q9H106	197 aa		13.31	□□□□□ -0.28
PTPA-223	ENST00000452489		H0YGX0	51 aa		13.31	□□□□□ -0.28
PTPA-223	ENST00000452489	S100A7L2	Q5SY68	101 aa		13.3	□□□□□ -0.28
PTPA-223	ENST00000452489	ATP5EP2	Q5VTU8	51 aa		13.3	□□□□□ -0.28
PTPA-223	ENST00000452489	C11orf72	Q8NBR9	251 aa		13.3	□□□□□ -0.28
PTPA-223	ENST00000452489	ORMDL1	Q9P0S3	153 aa		13.29	□□□□□ -0.28
PTPA-223	ENST00000452489		F8WEM9	126 aa		13.29	□□□□□ -0.28
PTPA-223	ENST00000452489	CELSR1	Q9NYQ6	3014 aa		13.28	□□□□□ -0.28
PTPA-223	ENST00000452489	TRAV7	A0A075B6U4	112 aa		13.27	□□□□□ -0.29
PTPA-223	ENST00000452489	IGFL3	Q6UXB1	125 aa		13.27	□□□□□ -0.29
PTPA-223	ENST00000452489		Q96MF0	132 aa		13.27	□□□□□ -0.29
PTPA-223	ENST00000452489	SORL1	Q92673	2214 aa		13.27	□□□□□ -0.29
PTPA-223	ENST00000452489	KLKP1	Q107X0	134 aa		13.27	□□□□□ -0.29
PTPA-223	ENST00000452489	TRBV7-6	A0A0J9YX20	115 aa		13.26	□□□□□ -0.29
PTPA-223	ENST00000452489	RBM3	P98179	157 aa	Known RBP	13.26	□□□□□ -0.29
PTPA-223	ENST00000452489	COL6A6	A6NMZ7	2263 aa		13.24	□□□□□ -0.29
PTPA-223	ENST00000452489	TRAV10	A0A0B4J240	114 aa		13.23	□□□□□ -0.29
PTPA-223	ENST00000452489	CCL18	P55774	89 aa		13.23	□□□□□ -0.29
PTPA-223	ENST00000452489		Q6ZTI0	123 aa		13.23	□□□□□ -0.29
PTPA-223	ENST00000452489	BPESC1	Q9GZL8	116 aa		13.23	□□□□□ -0.29
PTPA-223	ENST00000452489	LINC00158	P58513	81 aa		13.22	□□□□□ -0.29
PTPA-223	ENST00000452489	LINC00482	Q8N8I6	264 aa		13.22	□□□□□ -0.29
PTPA-223	ENST00000452489	UBL5	Q9BZL1	73 aa		13.22	□□□□□ -0.29
PTPA-223	ENST00000452489	MOB4	Q9Y3A3	225 aa		13.22	□□□□□ -0.29
PTPA-223	ENST00000452489	HRNR	Q86YZ3	2850 aa	Predicted RBP	13.22	□□□□□ -0.29
PTPA-223	ENST00000452489	GRN	P28799	593 aa	Known RBP	13.21	□□□□□ -0.29
PTPA-223	ENST00000452489	TRBV10-3	A0A0K0K1G6	114 aa		13.21	□□□□□ -0.29
PTPA-223	ENST00000452489	DEFB123	Q8N688	67 aa		13.21	□□□□□ -0.29
PTPA-223	ENST00000452489	SNRPD3	P62318	126 aa	Known RBP	13.2	□□□□□ -0.3
PTPA-223	ENST00000452489	TOMM7	Q9P0U1	55 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms