RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	CLRN3	Q8NCR9	226 aa		5.58	□□□□□ -1.52
RFX3-209	ENST00000451859	TSKU	Q8WUA8	353 aa		5.58	□□□□□ -1.52
RFX3-209	ENST00000451859	ST20	Q9HBF5	79 aa		5.58	□□□□□ -1.52
RFX3-209	ENST00000451859		I3L3M4	83 aa		5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	CHTF8	P0CG12	524 aa		5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	RPL37A	P61513	92 aa	Known RBP	5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	ADIRF	Q15847	76 aa		5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	C15orf56	Q8N910	161 aa		5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	DPH3	Q96FX2	82 aa		5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	BTF3L4	Q96K17	158 aa		5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	TMEM191A	Q9H0A3	160 aa		5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	OSTC	Q9NRP0	149 aa		5.57	□□□□□ -1.52
RFX3-209	ENST00000451859	IGHV3-64	A0A075B6Q5	118 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	FAM231B	A6NCW3	169 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859		C9JQL5	133 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	TSHB	P01222	138 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	SLPI	P03973	132 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	RAB4A	P20338	218 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	XCL1	P47992	114 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	KRTAP10-4	P60372	401 aa	Predicted RBP	5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	CNBP	P62633	177 aa	Known RBP	5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	RPL23	P62829	140 aa	Known RBP	5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	RIG	Q13278	110 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	TMEM241	Q24JQ0	296 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	NUP35	Q8NFH5	326 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	OR5A1	Q8NGJ0	315 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	ISOC2	Q96AB3	205 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	MRAP2	Q96G30	205 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	RNF185	Q96GF1	192 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	TMEM101	Q96IK0	257 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859		V9GYV3	84 aa		5.56	□□□□□ -1.52
RFX3-209	ENST00000451859	TRBV6-5	A0A0K0K1A5	114 aa		5.55	□□□□□ -1.52
RFX3-209	ENST00000451859	SDIM1	Q6ZPB5	146 aa		5.55	□□□□□ -1.52
RFX3-209	ENST00000451859		H7C423	109 aa		5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	CCL25	O15444	150 aa		5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	ESD	P10768	282 aa		5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	ZNF25	P17030	456 aa	Predicted RBP	5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	FCER1G	P30273	86 aa		5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	CAMP	P49913	170 aa		5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	RNASE13	Q5GAN3	156 aa	Known RBP	5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	CFAP161	Q6P656	301 aa		5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	LINC00526	Q96FQ7	95 aa		5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	NAT8	Q9UHE5	227 aa		5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	NAT8B	Q9UHF3	227 aa		5.54	□□□□□ -1.52
RFX3-209	ENST00000451859	IGKV2-24	A0A0C4DH68	120 aa		5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	LINC00959	A0A1B0GUT2	108 aa		5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	C7orf77	A4D0Y5	90 aa		5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	NDUFS6	O75380	124 aa	Known RBP	5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	HNRNPA3	P51991	378 aa	Known RBP	5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	POLR2K	P53803	58 aa	Known RBP	5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	COX6A2	Q02221	97 aa		5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	FOXI1	Q12951	378 aa		5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	PEA15	Q15121	130 aa		5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	FAM74A3	Q4VXF1	159 aa		5.53	□□□□□ -1.52
RFX3-209	ENST00000451859	MRPL54	Q6P161	138 aa	Known RBP	5.53	□□□□□ -1.52
RFX3-209	ENST00000451859		A0A087WYN8	130 aa		5.52	□□□□□ -1.53
RFX3-209	ENST00000451859	TRBV27	A0A0K0K1C4	114 aa		5.52	□□□□□ -1.53
RFX3-209	ENST00000451859	KRTAP29-1	A8MX34	341 aa	Predicted RBP	5.52	□□□□□ -1.53
RFX3-209	ENST00000451859	SUMO2	P61956	95 aa	Known RBP	5.52	□□□□□ -1.53
RFX3-209	ENST00000451859	SS18	Q15532	418 aa		5.52	□□□□□ -1.53
RFX3-209	ENST00000451859	MRPL51	Q4U2R6	128 aa	Known RBP	5.52	□□□□□ -1.53
RFX3-209	ENST00000451859	NRAC	Q8N912	160 aa		5.52	□□□□□ -1.53
RFX3-209	ENST00000451859	SPACA4	Q8TDM5	124 aa		5.52	□□□□□ -1.53
RFX3-209	ENST00000451859	GVQW2	A0A096LPI5	108 aa	Predicted RBP	5.51	□□□□□ -1.53
RFX3-209	ENST00000451859	SMIM27	A0A1W2PRY6	76 aa		5.51	□□□□□ -1.53
RFX3-209	ENST00000451859	VCY	O14598	125 aa		5.51	□□□□□ -1.53
RFX3-209	ENST00000451859	CKS2	P33552	79 aa		5.51	□□□□□ -1.53
RFX3-209	ENST00000451859	MAJIN	Q3KP22	176 aa		5.51	□□□□□ -1.53
RFX3-209	ENST00000451859	FAM104B	Q5XKR9	115 aa		5.51	□□□□□ -1.53
RFX3-209	ENST00000451859	ZNF664	Q8N3J9	261 aa		5.51	□□□□□ -1.53
RFX3-209	ENST00000451859	PRSS3P2	Q8NHM4	247 aa		5.51	□□□□□ -1.53
RFX3-209	ENST00000451859	CDC42SE2	Q9NRR3	84 aa		5.51	□□□□□ -1.53
RFX3-209	ENST00000451859	IGHV1-58	A0A0C4DH39	117 aa		5.5	□□□□□ -1.53
RFX3-209	ENST00000451859	CIRBP	Q14011	172 aa	Known RBP	5.5	□□□□□ -1.53
RFX3-209	ENST00000451859	MRPL52	Q86TS9	123 aa	Known RBP	5.5	□□□□□ -1.53
RFX3-209	ENST00000451859	KIR2DL4	Q99706	377 aa		5.5	□□□□□ -1.53
RFX3-209	ENST00000451859	KRTAP3-1	Q9BYR8	98 aa		5.5	□□□□□ -1.53
RFX3-209	ENST00000451859		A0A096LNI7	61 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859	TRAV13-1	A0A0B4J241	112 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859		D6R8Y8	96 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859	ZNF561-AS1	K7EIQ3	104 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859	PHOX2A	O14813	284 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859	PPP1R2P9	O14990	202 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859	PPP1R17	O96001	155 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859	MAL	P21145	153 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859	CD164L2	Q6UWJ8	174 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859		Q6ZUT4	128 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859	CARD19	Q96LW7	228 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859	UBE2D4	Q9Y2X8	147 aa		5.49	□□□□□ -1.53
RFX3-209	ENST00000451859		A0A1B0GW15	77 aa		5.48	□□□□□ -1.53
RFX3-209	ENST00000451859	TNFRSF6B	O95407	300 aa		5.48	□□□□□ -1.53
RFX3-209	ENST00000451859	OXT	P01178	125 aa		5.48	□□□□□ -1.53
RFX3-209	ENST00000451859	NPY	P01303	97 aa		5.48	□□□□□ -1.53
RFX3-209	ENST00000451859	RPL39	P62891	51 aa	Known RBP	5.48	□□□□□ -1.53
RFX3-209	ENST00000451859	HBB	P68871	147 aa		5.48	□□□□□ -1.53
RFX3-209	ENST00000451859	SMAGP	Q0VAQ4	97 aa		5.48	□□□□□ -1.53
RFX3-209	ENST00000451859	C5orf38	Q86SI9	138 aa		5.48	□□□□□ -1.53
RFX3-209	ENST00000451859	STPG4	Q8N801	248 aa		5.48	□□□□□ -1.53

Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms