RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 VPS13AQ96RL7 3174 aa2.58□□□□□ -2
VPS29-202ENST00000447578 ARHGAP32A7KAX9 2087 aa2.57□□□□□ -2
VPS29-202ENST00000447578 DMDP11532 3685 aa2.57□□□□□ -2
VPS29-202ENST00000447578 TRAV12-2A0A075B6T6 113 aa2.57□□□□□ -2
VPS29-202ENST00000447578 F8VRH5 84 aa2.57□□□□□ -2
VPS29-202ENST00000447578 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.57□□□□□ -2
VPS29-202ENST00000447578 H3BRM9 83 aa2.57□□□□□ -2
VPS29-202ENST00000447578 LGALS9O00182 355 aa2.57□□□□□ -2
VPS29-202ENST00000447578 PPP1R17O96001 155 aa2.57□□□□□ -2
VPS29-202ENST00000447578 SNRPD3P62318 126 aaKnown RBP2.57□□□□□ -2
VPS29-202ENST00000447578 SPINK13Q1W4C9 94 aa2.57□□□□□ -2
VPS29-202ENST00000447578 DEFB113Q30KQ7 82 aa2.57□□□□□ -2
VPS29-202ENST00000447578 NEGR1Q7Z3B1 354 aa2.57□□□□□ -2
VPS29-202ENST00000447578 DEFB104AQ8WTQ1 72 aa2.57□□□□□ -2
VPS29-202ENST00000447578 RAB37Q96AX2 223 aa2.57□□□□□ -2
VPS29-202ENST00000447578 TOMM6Q96B49 74 aa2.57□□□□□ -2
VPS29-202ENST00000447578 ODF3Q96PU9 254 aa2.57□□□□□ -2
VPS29-202ENST00000447578 TTTY13Q9BZ97 58 aa2.57□□□□□ -2
VPS29-202ENST00000447578 HHLA3Q9XRX5 114 aa2.57□□□□□ -2
VPS29-202ENST00000447578 PLXNB1O43157 2135 aa2.57□□□□□ -2
VPS29-202ENST00000447578 APC2O95996 2303 aa2.57□□□□□ -2
VPS29-202ENST00000447578 PLCE1Q9P212 2302 aa2.57□□□□□ -2
VPS29-202ENST00000447578 NAV3Q8IVL0 2385 aa2.57□□□□□ -2
VPS29-202ENST00000447578 PKDREJQ9NTG1 2253 aa2.56□□□□□ -2
VPS29-202ENST00000447578 TRBV25-1A0A075B6N4 114 aa2.56□□□□□ -2
VPS29-202ENST00000447578 TRAV12-1A0A0B4J245 112 aa2.56□□□□□ -2
VPS29-202ENST00000447578 A0A0J9YX75 114 aa2.56□□□□□ -2
VPS29-202ENST00000447578 KNCNA6PVL3 124 aa2.56□□□□□ -2
VPS29-202ENST00000447578 H3BUT2 72 aa2.56□□□□□ -2
VPS29-202ENST00000447578 K7EMI3 77 aa2.56□□□□□ -2
VPS29-202ENST00000447578 HLA-DRB4P13762 266 aa2.56□□□□□ -2
VPS29-202ENST00000447578 PLNP26678 52 aa2.56□□□□□ -2
VPS29-202ENST00000447578 LINC00315P59091 139 aa2.56□□□□□ -2
VPS29-202ENST00000447578 DEFB131AP59861 70 aa2.56□□□□□ -2
VPS29-202ENST00000447578 ZNF56Q15929 161 aa2.56□□□□□ -2
VPS29-202ENST00000447578 DEFB136Q30KP8 78 aa2.56□□□□□ -2
VPS29-202ENST00000447578 LINC00483Q53H64 154 aa2.56□□□□□ -2
VPS29-202ENST00000447578 FAM74A4Q5TZK3 123 aa2.56□□□□□ -2
VPS29-202ENST00000447578 Q5W150 140 aa2.56□□□□□ -2
VPS29-202ENST00000447578 MORN3Q6PF18 240 aaPredicted RBP2.56□□□□□ -2
VPS29-202ENST00000447578 NAA38Q9BRA0 125 aaKnown RBP2.56□□□□□ -2
VPS29-202ENST00000447578 ANAPC13Q9BS18 74 aa2.56□□□□□ -2
VPS29-202ENST00000447578 HIGD1BQ9P298 99 aa2.56□□□□□ -2
VPS29-202ENST00000447578 CYSLTR1Q9Y271 337 aa2.56□□□□□ -2
VPS29-202ENST00000447578 CBY1Q9Y3M2 126 aa2.56□□□□□ -2
VPS29-202ENST00000447578 HLA-DRB4X5D2U9 266 aa2.56□□□□□ -2
VPS29-202ENST00000447578 CELSR3Q9NYQ7 3312 aa2.56□□□□□ -2
VPS29-202ENST00000447578 CNOT1A5YKK6 2376 aaKnown RBP2.56□□□□□ -2
VPS29-202ENST00000447578 CFAP54Q96N23 3096 aa2.55□□□□□ -2
VPS29-202ENST00000447578 TRAV8-3A0A0A6YYJ7 113 aa2.55□□□□□ -2
VPS29-202ENST00000447578 MYMXA0A1B0GTQ4 84 aa2.55□□□□□ -2
VPS29-202ENST00000447578 OR11H12B2RN74 326 aa2.55□□□□□ -2
VPS29-202ENST00000447578 K7EP13 123 aa2.55□□□□□ -2
VPS29-202ENST00000447578 K7EP34 96 aa2.55□□□□□ -2
VPS29-202ENST00000447578 K7ERJ3 54 aa2.55□□□□□ -2
VPS29-202ENST00000447578 FRYLO94915 3013 aa2.55□□□□□ -2
VPS29-202ENST00000447578 CRYGDP07320 174 aa2.55□□□□□ -2
VPS29-202ENST00000447578 SMIM13P0DJ93 91 aa2.55□□□□□ -2
VPS29-202ENST00000447578 SCGB1C2P0DMR2 95 aa2.55□□□□□ -2
VPS29-202ENST00000447578 HTN1P15515 57 aa2.55□□□□□ -2
VPS29-202ENST00000447578 FXYD2P54710 66 aa2.55□□□□□ -2
VPS29-202ENST00000447578 FOXI2Q6ZQN5 318 aa2.55□□□□□ -2
VPS29-202ENST00000447578 GTF2H5Q6ZYL4 71 aa2.55□□□□□ -2
VPS29-202ENST00000447578 OR11H1Q8NG94 326 aa2.55□□□□□ -2
VPS29-202ENST00000447578 OR11H2Q8NH07 326 aa2.55□□□□□ -2
VPS29-202ENST00000447578 DYNLRB2Q8TF09 96 aa2.55□□□□□ -2
VPS29-202ENST00000447578 LINC01587Q99440 93 aa2.55□□□□□ -2
VPS29-202ENST00000447578 PRADC1Q9BSG0 188 aa2.55□□□□□ -2
VPS29-202ENST00000447578 RBM12B-AS1Q9P1G2 102 aa2.55□□□□□ -2
VPS29-202ENST00000447578 KLK12Q9UKR0 248 aa2.55□□□□□ -2
VPS29-202ENST00000447578 TP53TG1Q9Y2A0 90 aa2.55□□□□□ -2
VPS29-202ENST00000447578 ZNF706Q9Y5V0 76 aaPredicted RBP2.55□□□□□ -2
VPS29-202ENST00000447578 WDFY4Q6ZS81 3184 aa2.55□□□□□ -2
VPS29-202ENST00000447578 ZFHX2Q9C0A1 2572 aaPredicted RBP2.55□□□□□ -2
VPS29-202ENST00000447578 PTPRQQ9UMZ3 2332 aa2.54□□□□□ -2
VPS29-202ENST00000447578 MUC3AQ02505 3323 aa2.54□□□□□ -2
VPS29-202ENST00000447578 WDR87Q6ZQQ6 2873 aa2.54□□□□□ -2
VPS29-202ENST00000447578 IGHV3-73A0A0B4J1V6 119 aa2.54□□□□□ -2
VPS29-202ENST00000447578 TRBV6-5A0A0K0K1A5 114 aa2.54□□□□□ -2
VPS29-202ENST00000447578 A0A1W2PPM0 123 aa2.54□□□□□ -2
VPS29-202ENST00000447578 SDHAF1A6NFY7 115 aa2.54□□□□□ -2
VPS29-202ENST00000447578 LINC01549A6NIU2 74 aa2.54□□□□□ -2
VPS29-202ENST00000447578 IGIPA6NJ69 53 aa2.54□□□□□ -2
VPS29-202ENST00000447578 M0QY20 66 aa2.54□□□□□ -2
VPS29-202ENST00000447578 FABP2P12104 132 aa2.54□□□□□ -2
VPS29-202ENST00000447578 POLR2KP53803 58 aaKnown RBP2.54□□□□□ -2
VPS29-202ENST00000447578 EMP1P54849 157 aa2.54□□□□□ -2
VPS29-202ENST00000447578 RPL39P62891 51 aaKnown RBP2.54□□□□□ -2
VPS29-202ENST00000447578 RHOHQ15669 191 aa2.54□□□□□ -2
VPS29-202ENST00000447578 AMTNQ6UX39 209 aa2.54□□□□□ -2
VPS29-202ENST00000447578 PP632Q6XCG6 107 aa2.54□□□□□ -2
VPS29-202ENST00000447578 Q8N2B8 174 aa2.54□□□□□ -2
VPS29-202ENST00000447578 C4orf3Q8WVX3 66 aa2.54□□□□□ -2
VPS29-202ENST00000447578 TMEM141Q96I45 108 aa2.54□□□□□ -2
VPS29-202ENST00000447578 CST9LQ9H4G1 147 aa2.54□□□□□ -2
VPS29-202ENST00000447578 NHP2Q9NX24 153 aaKnown RBP2.54□□□□□ -2
VPS29-202ENST00000447578 SPCS1Q9Y6A9 102 aa2.54□□□□□ -2
VPS29-202ENST00000447578 CUL9Q8IWT3 2517 aa2.54□□□□□ -2
VPS29-202ENST00000447578 POLEQ07864 2286 aa2.54□□□□□ -2
VPS29-202ENST00000447578 BDP1A6H8Y1 2624 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms