RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 TOMM6Q96B49 74 aa11.26□□□□□ -0.61
TTC28-202ENST00000431039 MRPS16Q9Y3D3 137 aaKnown RBP11.26□□□□□ -0.61
TTC28-202ENST00000431039 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.25□□□□□ -0.61
TTC28-202ENST00000431039 IGKV2-29A2NJV5 120 aaPredicted RBP11.25□□□□□ -0.61
TTC28-202ENST00000431039 PKIAP61925 76 aa11.25□□□□□ -0.61
TTC28-202ENST00000431039 SNRPEP62304 92 aaKnown RBP11.25□□□□□ -0.61
TTC28-202ENST00000431039 PMCHL1Q16048 86 aa11.25□□□□□ -0.61
TTC28-202ENST00000431039 PDZD11Q5EBL8 140 aa11.25□□□□□ -0.61
TTC28-202ENST00000431039 FAM19A2Q8N3H0 131 aa11.25□□□□□ -0.61
TTC28-202ENST00000431039 CHCHD5Q9BSY4 110 aa11.25□□□□□ -0.61
TTC28-202ENST00000431039 UBE2L6O14933 153 aa11.24□□□□□ -0.61
TTC28-202ENST00000431039 RPL39P62891 51 aaKnown RBP11.24□□□□□ -0.61
TTC28-202ENST00000431039 SMAGPQ0VAQ4 97 aa11.24□□□□□ -0.61
TTC28-202ENST00000431039 MRPL52Q86TS9 123 aaKnown RBP11.24□□□□□ -0.61
TTC28-202ENST00000431039 HIST3H2BBQ8N257 126 aa11.24□□□□□ -0.61
TTC28-202ENST00000431039 PACRGQ96M98 296 aaPredicted RBP11.24□□□□□ -0.61
TTC28-202ENST00000431039 TIMM21Q9BVV7 248 aa11.24□□□□□ -0.61
TTC28-202ENST00000431039 GAGE6Q13070 117 aa11.23□□□□□ -0.61
TTC28-202ENST00000431039 SPATA12Q7Z6I5 190 aa11.23□□□□□ -0.61
TTC28-202ENST00000431039 UPK3BQ9BT76 320 aa11.23□□□□□ -0.61
TTC28-202ENST00000431039 SPANXA1Q9NS26 97 aa11.23□□□□□ -0.61
TTC28-202ENST00000431039 PYGO1Q9Y3Y4 419 aa11.23□□□□□ -0.61
TTC28-202ENST00000431039 IGIPA6NJ69 53 aa11.22□□□□□ -0.61
TTC28-202ENST00000431039 FGF6P10767 208 aa11.22□□□□□ -0.61
TTC28-202ENST00000431039 SCGB3A1Q96QR1 104 aa11.22□□□□□ -0.61
TTC28-202ENST00000431039 UBE2D4Q9Y2X8 147 aa11.22□□□□□ -0.61
TTC28-202ENST00000431039 CSDC2Q9Y534 153 aaKnown RBP11.22□□□□□ -0.61
TTC28-202ENST00000431039 A0A1B0GUV1 79 aa11.21□□□□□ -0.61
TTC28-202ENST00000431039 TMEM262E9PQX1 116 aa11.21□□□□□ -0.61
TTC28-202ENST00000431039 NPSP0C0P6 89 aa11.21□□□□□ -0.61
TTC28-202ENST00000431039 ZNF25P17030 456 aaPredicted RBP11.21□□□□□ -0.61
TTC28-202ENST00000431039 ERASQ7Z444 233 aa11.21□□□□□ -0.61
TTC28-202ENST00000431039 TIMM17AQ99595 171 aa11.21□□□□□ -0.61
TTC28-202ENST00000431039 ATP5LO75964 103 aa11.2□□□□□ -0.62
TTC28-202ENST00000431039 LEPROTL1O95214 131 aa11.2□□□□□ -0.62
TTC28-202ENST00000431039 S100A2P29034 98 aa11.2□□□□□ -0.62
TTC28-202ENST00000431039 AMMECR1LQ6DCA0 310 aa11.2□□□□□ -0.62
TTC28-202ENST00000431039 WFDC10BQ8IUB3 73 aa11.2□□□□□ -0.62
TTC28-202ENST00000431039 TMEM141Q96I45 108 aa11.2□□□□□ -0.62
TTC28-202ENST00000431039 KRTAP1-5Q9BYS1 174 aa11.2□□□□□ -0.62
TTC28-202ENST00000431039 Q9H8V8 135 aa11.2□□□□□ -0.62
TTC28-202ENST00000431039 HSPB8Q9UJY1 196 aa11.2□□□□□ -0.62
TTC28-202ENST00000431039 RBX1P62877 108 aa11.19□□□□□ -0.62
TTC28-202ENST00000431039 MRPS36P82909 103 aaKnown RBP11.19□□□□□ -0.62
TTC28-202ENST00000431039 OR5A1Q8NGJ0 315 aa11.19□□□□□ -0.62
TTC28-202ENST00000431039 TMEM101Q96IK0 257 aa11.19□□□□□ -0.62
TTC28-202ENST00000431039 A0A087WX48 190 aa11.18□□□□□ -0.62
TTC28-202ENST00000431039 FABP4P15090 132 aa11.18□□□□□ -0.62
TTC28-202ENST00000431039 LINC01556Q5JQF7 62 aa11.18□□□□□ -0.62
TTC28-202ENST00000431039 DGAT2L7PQ6IED9 249 aa11.18□□□□□ -0.62
TTC28-202ENST00000431039 Q8N1X5 172 aa11.18□□□□□ -0.62
TTC28-202ENST00000431039 HIST1H2BLQ99880 126 aa11.18□□□□□ -0.62
TTC28-202ENST00000431039 IFITM10A6NMD0 228 aa11.17□□□□□ -0.62
TTC28-202ENST00000431039 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.17□□□□□ -0.62
TTC28-202ENST00000431039 DNAH10OSP0CZ25 163 aa11.17□□□□□ -0.62
TTC28-202ENST00000431039 MPV17L2Q567V2 206 aa11.17□□□□□ -0.62
TTC28-202ENST00000431039 TTC32Q5I0X7 151 aa11.17□□□□□ -0.62
TTC28-202ENST00000431039 PAPPA-AS1Q5QFB9 102 aa11.17□□□□□ -0.62
TTC28-202ENST00000431039 FAM104AQ969W3 186 aa11.17□□□□□ -0.62
TTC28-202ENST00000431039 IFI27L1Q96BM0 104 aa11.17□□□□□ -0.62
TTC28-202ENST00000431039 CDC42SE2Q9NRR3 84 aa11.17□□□□□ -0.62
TTC28-202ENST00000431039 IGLV4-60A0A075B6I1 120 aa11.16□□□□□ -0.62
TTC28-202ENST00000431039 IGLV4-3A0A075B6K6 122 aa11.16□□□□□ -0.62
TTC28-202ENST00000431039 SIVA1O15304 175 aa11.16□□□□□ -0.62
TTC28-202ENST00000431039 KRTAP10-2P60368 255 aa11.16□□□□□ -0.62
TTC28-202ENST00000431039 LINC00173Q6ZV60 143 aa11.16□□□□□ -0.62
TTC28-202ENST00000431039 ZNF664Q8N3J9 261 aa11.16□□□□□ -0.62
TTC28-202ENST00000431039 HERC1Q15751 4861 aa11.15□□□□□ -0.62
TTC28-202ENST00000431039 Q8N976 141 aa11.15□□□□□ -0.62
TTC28-202ENST00000431039 OPRPNQ99935 248 aaPredicted RBP11.15□□□□□ -0.62
TTC28-202ENST00000431039 Q6ZN92 141 aa11.14□□□□□ -0.63
TTC28-202ENST00000431039 Q6ZUT4 128 aa11.14□□□□□ -0.63
TTC28-202ENST00000431039 Q8N3U1 123 aa11.14□□□□□ -0.63
TTC28-202ENST00000431039 VCX2Q9H322 139 aa11.14□□□□□ -0.63
TTC28-202ENST00000431039 IGHV3-30P01768 117 aa11.13□□□□□ -0.63
TTC28-202ENST00000431039 IGHV3-33P01772 117 aa11.13□□□□□ -0.63
TTC28-202ENST00000431039 IGHV3-30-3P0DP02 117 aa11.13□□□□□ -0.63
TTC28-202ENST00000431039 IGHV3-30-5P0DP03 117 aa11.13□□□□□ -0.63
TTC28-202ENST00000431039 BAALCQ8WXS3 180 aa11.13□□□□□ -0.63
TTC28-202ENST00000431039 AMELXQ99217 191 aa11.13□□□□□ -0.63
TTC28-202ENST00000431039 K7EP13 123 aa11.12□□□□□ -0.63
TTC28-202ENST00000431039 MAP1LC3CQ9BXW4 147 aa11.12□□□□□ -0.63
TTC28-202ENST00000431039 ANGP03950 147 aaKnown RBP11.11□□□□□ -0.63
TTC28-202ENST00000431039 PRSS1P07477 247 aa11.11□□□□□ -0.63
TTC28-202ENST00000431039 PMVKQ15126 192 aa11.11□□□□□ -0.63
TTC28-202ENST00000431039 TEX43Q6ZNM6 134 aa11.11□□□□□ -0.63
TTC28-202ENST00000431039 TRAV9-2A0A087WT02 112 aa11.1□□□□□ -0.63
TTC28-202ENST00000431039 TRAV12-1A0A0B4J245 112 aa11.1□□□□□ -0.63
TTC28-202ENST00000431039 CST9LQ9H4G1 147 aa11.1□□□□□ -0.63
TTC28-202ENST00000431039 PRR34Q9NV39 138 aa11.1□□□□□ -0.63
TTC28-202ENST00000431039 KLK12Q9UKR0 248 aa11.1□□□□□ -0.63
TTC28-202ENST00000431039 FAT1Q14517 4588 aa11.1□□□□□ -0.63
TTC28-202ENST00000431039 SYS1-DBNDD2H3BUS1 97 aa11.09□□□□□ -0.63
TTC28-202ENST00000431039 C3orf79P0CE67 100 aa11.09□□□□□ -0.63
TTC28-202ENST00000431039 RNASE13Q5GAN3 156 aaKnown RBP11.09□□□□□ -0.63
TTC28-202ENST00000431039 ZC2HC1BQ5TFG8 222 aa11.09□□□□□ -0.63
TTC28-202ENST00000431039 LINC00269Q8N2A0 174 aa11.09□□□□□ -0.63
TTC28-202ENST00000431039 C10orf126Q8N4M7 172 aa11.09□□□□□ -0.63
TTC28-202ENST00000431039 C2orf88Q9BSF0 95 aa11.09□□□□□ -0.63
TTC28-202ENST00000431039 FUSP35637 526 aaKnown RBP eCLIP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms