RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 TRAV8-3A0A0A6YYJ7 113 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 LRCOL1A6NCL2 159 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 LINC01546A6NGU7 62 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 COLCA2A8K830 154 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 ANGP03950 147 aaKnown RBP8.26□□□□□ -1.09
USP40-205ENST00000430158 FABP9Q0Z7S8 132 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 LINC00269Q8N2A0 174 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 UBE2WQ96B02 151 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 MAP1LC3AQ9H492 121 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 Q9HAA7 133 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 TRAPPC1Q9Y5R8 145 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 BIRC6Q9NR09 4857 aa8.26□□□□□ -1.09
USP40-205ENST00000430158 DNAH5Q8TE73 4624 aa8.25□□□□□ -1.09
USP40-205ENST00000430158 LOC389332A0A1B0GUA5 103 aa8.25□□□□□ -1.09
USP40-205ENST00000430158 FCER1GP30273 86 aa8.25□□□□□ -1.09
USP40-205ENST00000430158 TIMM21Q9BVV7 248 aa8.25□□□□□ -1.09
USP40-205ENST00000430158 UBE2D4Q9Y2X8 147 aa8.25□□□□□ -1.09
USP40-205ENST00000430158 CSDC2Q9Y534 153 aaKnown RBP8.25□□□□□ -1.09
USP40-205ENST00000430158 UBE2L6O14933 153 aa8.24□□□□□ -1.09
USP40-205ENST00000430158 SCO1O75880 301 aa8.24□□□□□ -1.09
USP40-205ENST00000430158 ZNF25P17030 456 aaPredicted RBP8.24□□□□□ -1.09
USP40-205ENST00000430158 IFI27P40305 119 aaPredicted RBP8.24□□□□□ -1.09
USP40-205ENST00000430158 RPL39P62891 51 aaKnown RBP8.24□□□□□ -1.09
USP40-205ENST00000430158 Q0VG73 95 aa8.24□□□□□ -1.09
USP40-205ENST00000430158 NXT2Q9NPJ8 142 aaKnown RBP8.24□□□□□ -1.09
USP40-205ENST00000430158 CDC42SE2Q9NRR3 84 aa8.24□□□□□ -1.09
USP40-205ENST00000430158 REG3AQ06141 175 aa8.23□□□□□ -1.09
USP40-205ENST00000430158 WFDC2Q14508 124 aa8.23□□□□□ -1.09
USP40-205ENST00000430158 MIAQ16674 131 aa8.23□□□□□ -1.09
USP40-205ENST00000430158 URB1-AS1Q96HZ7 61 aa8.23□□□□□ -1.09
USP40-205ENST00000430158 A0A087WTM6 91 aa8.22□□□□□ -1.09
USP40-205ENST00000430158 K7EMI3 77 aa8.22□□□□□ -1.09
USP40-205ENST00000430158 AMMECR1LQ6DCA0 310 aa8.22□□□□□ -1.09
USP40-205ENST00000430158 RNASEKQ6P5S7 137 aaKnown RBP8.22□□□□□ -1.09
USP40-205ENST00000430158 CLPSL2Q6UWE3 100 aa8.22□□□□□ -1.09
USP40-205ENST00000430158 C18orf32Q8TCD1 76 aa8.22□□□□□ -1.09
USP40-205ENST00000430158 TM2D2Q9BX73 214 aa8.22□□□□□ -1.09
USP40-205ENST00000430158 KRTAP4-2Q9BYR5 136 aa8.22□□□□□ -1.09
USP40-205ENST00000430158 RAB5AP20339 215 aa8.21□□□□□ -1.1
USP40-205ENST00000430158 IGKV2D-24A0A075B6R9 120 aa8.2□□□□□ -1.1
USP40-205ENST00000430158 ZNF664Q8N3J9 261 aa8.2□□□□□ -1.1
USP40-205ENST00000430158 OR5A1Q8NGJ0 315 aa8.2□□□□□ -1.1
USP40-205ENST00000430158 RMI2Q96E14 147 aa8.2□□□□□ -1.1
USP40-205ENST00000430158 PYGO1Q9Y3Y4 419 aa8.2□□□□□ -1.1
USP40-205ENST00000430158 COX11Q9Y6N1 276 aa8.2□□□□□ -1.1
USP40-205ENST00000430158 LRP1BQ9NZR2 4599 aa8.2□□□□□ -1.1
USP40-205ENST00000430158 TRAV8-4A0A0B4J246 113 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 IGIPA6NJ69 53 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 ATP6V1G1O75348 118 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 CRPP02741 224 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 KRTAP10-2P60368 255 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 MRPS36P82909 103 aaKnown RBP8.19□□□□□ -1.1
USP40-205ENST00000430158 ORMDL2Q53FV1 153 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 C2orf66Q6UXQ4 117 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 Q6ZUT4 128 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 TMEM18Q96B42 140 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 TMEM101Q96IK0 257 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 OPRPNQ99935 248 aaPredicted RBP8.19□□□□□ -1.1
USP40-205ENST00000430158 SPANXA1Q9NS26 97 aa8.19□□□□□ -1.1
USP40-205ENST00000430158 LINC00959A0A1B0GUT2 108 aa8.18□□□□□ -1.1
USP40-205ENST00000430158 TRGC2P03986 189 aa8.18□□□□□ -1.1
USP40-205ENST00000430158 PRSS3P2Q8NHM4 247 aa8.18□□□□□ -1.1
USP40-205ENST00000430158 BAALCQ8WXS3 180 aa8.18□□□□□ -1.1
USP40-205ENST00000430158 C1orf43Q9BWL3 253 aa8.18□□□□□ -1.1
USP40-205ENST00000430158 IGLV10-54A0A075B6I4 117 aa8.17□□□□□ -1.1
USP40-205ENST00000430158 IGLV4-3A0A075B6K6 122 aa8.17□□□□□ -1.1
USP40-205ENST00000430158 A0A096LNJ9 63 aa8.17□□□□□ -1.1
USP40-205ENST00000430158 PSCAO43653 123 aa8.17□□□□□ -1.1
USP40-205ENST00000430158 S100A1P23297 94 aa8.17□□□□□ -1.1
USP40-205ENST00000430158 RNASE13Q5GAN3 156 aaKnown RBP8.17□□□□□ -1.1
USP40-205ENST00000430158 TOMM6Q96B49 74 aa8.17□□□□□ -1.1
USP40-205ENST00000430158 SMAGPQ0VAQ4 97 aa8.16□□□□□ -1.1
USP40-205ENST00000430158 DGAT2L7PQ6IED9 249 aa8.16□□□□□ -1.1
USP40-205ENST00000430158 CHCHD10Q8WYQ3 142 aaPredicted RBP8.16□□□□□ -1.1
USP40-205ENST00000430158 CYSLTR1Q9Y271 337 aa8.16□□□□□ -1.1
USP40-205ENST00000430158 IGKV3OR2-268A0A0C4DH90 116 aa8.15□□□□□ -1.1
USP40-205ENST00000430158 NPSP0C0P6 89 aa8.15□□□□□ -1.1
USP40-205ENST00000430158 LINC00614P0C842 121 aa8.15□□□□□ -1.1
USP40-205ENST00000430158 FOXI1Q12951 378 aa8.15□□□□□ -1.1
USP40-205ENST00000430158 LINC00173Q6ZV60 143 aa8.15□□□□□ -1.1
USP40-205ENST00000430158 SPATA12Q7Z6I5 190 aa8.15□□□□□ -1.1
USP40-205ENST00000430158 GAGE12HA6NDE8 117 aa8.14□□□□□ -1.11
USP40-205ENST00000430158 LECT2O14960 151 aa8.14□□□□□ -1.11
USP40-205ENST00000430158 FUSP35637 526 aaKnown RBP eCLIP8.14□□□□□ -1.11
USP40-205ENST00000430158 LINC00310P59036 64 aa8.14□□□□□ -1.11
USP40-205ENST00000430158 FA2HQ7L5A8 372 aa8.14□□□□□ -1.11
USP40-205ENST00000430158 Q8N814 137 aa8.14□□□□□ -1.11
USP40-205ENST00000430158 AMELXQ99217 191 aa8.14□□□□□ -1.11
USP40-205ENST00000430158 DNAH8Q96JB1 4490 aa8.13□□□□□ -1.11
USP40-205ENST00000430158 USP17L23D6RBM5 183 aa8.13□□□□□ -1.11
USP40-205ENST00000430158 CCL25O15444 150 aa8.13□□□□□ -1.11
USP40-205ENST00000430158 ZC2HC1BQ5TFG8 222 aa8.13□□□□□ -1.11
USP40-205ENST00000430158 NTN5Q8WTR8 489 aaPredicted RBP8.13□□□□□ -1.11
USP40-205ENST00000430158 TMEM141Q96I45 108 aa8.13□□□□□ -1.11
USP40-205ENST00000430158 TIMM17AQ99595 171 aa8.13□□□□□ -1.11
USP40-205ENST00000430158 AP5S1Q9NUS5 200 aa8.13□□□□□ -1.11
USP40-205ENST00000430158 C1orf196B1AJZ1 125 aa8.12□□□□□ -1.11
USP40-205ENST00000430158 G0S2P27469 103 aa8.12□□□□□ -1.11
USP40-205ENST00000430158 CD164L2Q6UWJ8 174 aa8.12□□□□□ -1.11
USP40-205ENST00000430158 ERASQ7Z444 233 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms