RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 UFSP1Q6NVU6 142 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 BOD1L2Q8IYS8 172 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 C20orf197Q8N268 126 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 NCOR1P1Q9H4R4 102 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 ZNF705EA8MWA4 302 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 CHKB-CPT1BH3BT56 60 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 GYPCP04921 128 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 IGKV4-1P06312 121 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 PCOTHQ58A44 107 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 CAMK2N1Q7Z7J9 78 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 C8orf31Q8N9H6 132 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 IGKV2-40A0A087WW87 121 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 IGKV2D-40P01614 121 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 WNT4P56705 351 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 SUMO1P63165 101 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 Q5W150 140 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 PHF5AQ7RTV0 110 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 C14orf178Q8N769 122 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 TRAPPC1Q9Y5R8 145 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 RNASE3P12724 160 aaKnown RBP1.78□□□□□ -2.13
CCDC88A-205ENST00000426576 CRYBB3P26998 211 aa1.78□□□□□ -2.13
CCDC88A-205ENST00000426576 C10orf25Q5T742 122 aa1.78□□□□□ -2.13
CCDC88A-205ENST00000426576 GPR146Q96CH1 333 aa1.78□□□□□ -2.13
CCDC88A-205ENST00000426576 MRPL13Q9BYD1 178 aaKnown RBP1.78□□□□□ -2.13
CCDC88A-205ENST00000426576 A0A0A6YYD4 124 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 ZNF861PO60384 105 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 CXCL2P19875 107 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 CKS2P33552 79 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 C2orf76Q3KRA6 126 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 BAGE2Q86Y30 109 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 ZCCHC13Q8WW36 166 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 PARD6GQ9BYG4 376 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 C3orf85A0A1B0GTC6 90 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 HSBP1L1C9JCN9 74 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 PRM2P04554 102 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 ACYP2P14621 99 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 ZNF833PQ6ZTB9 187 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 LHFPL1Q86WI0 220 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 LINC01561Q8N1V8 128 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 KRTAP4-7Q9BYR0 210 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 EPDR1Q9UM22 224 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 ARID2Q68CP9 1835 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 TRBV6-8A0A0A6YYG3 113 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 MUC21A0A0G2JKD1 596 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 MUC21A0A140T8X8 626 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 HRES1P13985 223 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 CNBPP62633 177 aaKnown RBP1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 UBE2V2Q15819 145 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 Q6ZR54 194 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 TOMM5Q8N4H5 51 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 SCRT1Q9BWW7 348 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 SMIM3Q9BZL3 60 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 LINC00574Q9H8X3 128 aa1.77□□□□□ -2.13
CCDC88A-205ENST00000426576 SMIM30A4D0T7 59 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 F8W036 122 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 C17orf58Q2M2W7 97 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 SLC25A29Q8N8R3 303 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 ZNF625Q96I27 306 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 NDUFB11Q9NX14 153 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 ZNF580Q9UK33 172 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 FAM24AA6NFZ4 105 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 ARMS2P0C7Q2 107 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 ANAPC16Q96DE5 110 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 CARHSP1Q9Y2V2 147 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 IGKV1D-43A0A0B4J1Z2 117 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 ATP6V1FQ16864 119 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 LINC00242Q5T6M2 205 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 DNAJC30Q96LL9 226 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 MED9Q9NWA0 146 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 PRO2289Q9P1D8 64 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 DNAH9Q9NYC9 4486 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 PPP1R2P9O14990 202 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 PRR3P79522 188 aaKnown RBP1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 LINC01600Q96MT4 127 aa1.76□□□□□ -2.13
CCDC88A-205ENST00000426576 COL4A2P08572 1712 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 KIAA1549Q9HCM3 1950 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 C9JQL5 133 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 S100A11P31949 105 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 MITD1Q8WV92 249 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 OR10C1Q96KK4 312 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 PLXNA2O75051 1894 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 MYO16Q9Y6X6 1858 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 A6NN06 94 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 MRPL55Q7Z7F7 128 aaKnown RBP1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 Q8NBF4 154 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 TMEM174Q8WUU8 243 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 IGKV2-29A2NJV5 120 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 HMSDA8MTL9 139 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 ZNF705FA8MVS1 300 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 SOCS3O14543 225 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 ITGB1BP1O14713 200 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 AKAIN1P0CW23 69 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 ZNF25P17030 456 aaPredicted RBP1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 DEFB1P60022 68 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 PRLHP81277 87 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 SSBP3-AS1Q7Z2R9 100 aa1.75□□□□□ -2.13
CCDC88A-205ENST00000426576 CXCL3P19876 107 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 CCL1P22362 96 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 GNG4P50150 75 aa1.74□□□□□ -2.13
CCDC88A-205ENST00000426576 ORMDL3Q8N138 153 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms