RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 IGHV4-31P0DP07 118 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 HERVK_113P63121 156 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 DEFB114Q30KQ6 69 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 C15orf53Q8NAA6 179 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 COPS9Q8WXC6 57 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 CSDC2Q9Y534 153 aaKnown RBP7.06□□□□□ -1.28
CD44-206ENST00000415148 KMT2BQ9UMN6 2715 aaPredicted RBP7.06□□□□□ -1.28
CD44-206ENST00000415148 USP9YO00507 2555 aaPredicted RBP7.06□□□□□ -1.28
CD44-206ENST00000415148 POLQO75417 2590 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 GAGE2BQ13066 116 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 GAGE2EQ4V326 116 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 SVIPQ8NHG7 77 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 DYNLRB2Q8TF09 96 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 GAGE2DQ9UEU5 116 aa7.06□□□□□ -1.28
CD44-206ENST00000415148 TRAV8-4A0A0B4J246 113 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 SNCGO76070 127 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 DEFB136Q30KP8 78 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 DGAT2L7PQ6IED9 249 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 C2orf82Q6UX34 121 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 C18orf65Q6ZTR6 163 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 UBE2WQ96B02 151 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 TMEM101Q96IK0 257 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 CDKN2A-AS1Q9UH64 79 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 TRAV25A0A0B4J276 109 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 IGLV5-39A0A0G2JS06 123 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 LST1O00453 97 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 GAGE5Q13069 117 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 GAGE6Q13070 117 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 Q6Q795 121 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 CENPEQ02224 2701 aa7.05□□□□□ -1.28
CD44-206ENST00000415148 A0A0U1RRA0 63 aa7.04□□□□□ -1.28
CD44-206ENST00000415148 MRPL23Q16540 153 aaKnown RBP7.04□□□□□ -1.28
CD44-206ENST00000415148 DEFB121Q5J5C9 76 aa7.04□□□□□ -1.28
CD44-206ENST00000415148 PPDPFQ9H3Y8 114 aa7.04□□□□□ -1.28
CD44-206ENST00000415148 FBN2P35556 2912 aa7.04□□□□□ -1.28
CD44-206ENST00000415148 TRBV10-1A0A0K0K1A3 114 aa7.04□□□□□ -1.28
CD44-206ENST00000415148 COX6A2Q02221 97 aa7.04□□□□□ -1.28
CD44-206ENST00000415148 IL17DQ8TAD2 202 aa7.04□□□□□ -1.28
CD44-206ENST00000415148 USP9XQ93008 2570 aaPredicted RBP7.03□□□□□ -1.28
CD44-206ENST00000415148 NDUFA7O95182 113 aa7.03□□□□□ -1.28
CD44-206ENST00000415148 MAPK1IP1LQ8NDC0 245 aa7.03□□□□□ -1.28
CD44-206ENST00000415148 ZNF625Q96I27 306 aaPredicted RBP7.03□□□□□ -1.28
CD44-206ENST00000415148 CITED2Q99967 270 aaPredicted RBP7.03□□□□□ -1.28
CD44-206ENST00000415148 NIPBLQ6KC79 2804 aaeCLIP7.03□□□□□ -1.28
CD44-206ENST00000415148 IGHV3OR16-12A0A075B7B8 117 aa7.03□□□□□ -1.28
CD44-206ENST00000415148 DAZ2Q13117 558 aaKnown RBP7.03□□□□□ -1.28
CD44-206ENST00000415148 LINC00242Q5T6M2 205 aa7.03□□□□□ -1.28
CD44-206ENST00000415148 DAZ4Q86SG3 579 aaKnown RBP7.03□□□□□ -1.28
CD44-206ENST00000415148 BBC3Q96PG8 261 aaPredicted RBP7.03□□□□□ -1.28
CD44-206ENST00000415148 DAZ3Q9NR90 486 aaKnown RBP7.03□□□□□ -1.28
CD44-206ENST00000415148 FAM240AA0A1B0GVK7 77 aa7.02□□□□□ -1.29
CD44-206ENST00000415148 RPL36AP83881 106 aaKnown RBP7.02□□□□□ -1.29
CD44-206ENST00000415148 LRRC75A-AS1Q8N1F1 130 aa7.02□□□□□ -1.29
CD44-206ENST00000415148 TMEM86BQ8N661 226 aa7.02□□□□□ -1.29
CD44-206ENST00000415148 C3orf56Q8N813 242 aa7.02□□□□□ -1.29
CD44-206ENST00000415148 RPL36ALQ969Q0 106 aaKnown RBP7.02□□□□□ -1.29
CD44-206ENST00000415148 ZNF469Q96JG9 3925 aaPredicted RBP7.02□□□□□ -1.29
CD44-206ENST00000415148 C2CD3Q4AC94 2353 aa7.02□□□□□ -1.29
CD44-206ENST00000415148 LINC00308Q8TCZ7 52 aa7.02□□□□□ -1.29
CD44-206ENST00000415148 HERV-K104P63124 156 aa7.01□□□□□ -1.29
CD44-206ENST00000415148 STHQ8IWL8 128 aa7.01□□□□□ -1.29
CD44-206ENST00000415148 C1orf158Q8N1D5 194 aa7.01□□□□□ -1.29
CD44-206ENST00000415148 CHD6Q8TD26 2715 aa7.01□□□□□ -1.29
CD44-206ENST00000415148 SOSTDC1Q6X4U4 206 aa7.01□□□□□ -1.29
CD44-206ENST00000415148 Q9H8V8 135 aa7.01□□□□□ -1.29
CD44-206ENST00000415148 K7EQD1 137 aa7□□□□□ -1.29
CD44-206ENST00000415148 CMC4P56277 68 aaPredicted RBP7□□□□□ -1.29
CD44-206ENST00000415148 ODF3L2Q3SX64 289 aa7□□□□□ -1.29
CD44-206ENST00000415148 CHCHD5Q9BSY4 110 aa7□□□□□ -1.29
CD44-206ENST00000415148 XCL2Q9UBD3 114 aa7□□□□□ -1.29
CD44-206ENST00000415148 GAGE12JA6NER3 117 aa7□□□□□ -1.29
CD44-206ENST00000415148 SMIM1B2RUZ4 78 aa7□□□□□ -1.29
CD44-206ENST00000415148 GAGE7O76087 117 aa7□□□□□ -1.29
CD44-206ENST00000415148 GAGE12FP0CL80 117 aa7□□□□□ -1.29
CD44-206ENST00000415148 GAGE12GP0CL81 117 aa7□□□□□ -1.29
CD44-206ENST00000415148 GAGE12IP0CL82 117 aa7□□□□□ -1.29
CD44-206ENST00000415148 LINC00694P0DN24 101 aa7□□□□□ -1.29
CD44-206ENST00000415148 GAGE4Q13068 117 aa7□□□□□ -1.29
CD44-206ENST00000415148 CDC42SE2Q9NRR3 84 aa7□□□□□ -1.29
CD44-206ENST00000415148 NOTCH3Q9UM47 2321 aa6.99□□□□□ -1.29
CD44-206ENST00000415148 FAM208BQ5VWN6 2430 aa6.99□□□□□ -1.29
CD44-206ENST00000415148 TRGV1A0A0A0MS02 117 aa6.99□□□□□ -1.29
CD44-206ENST00000415148 COX7A2LO14548 114 aa6.99□□□□□ -1.29
CD44-206ENST00000415148 KHDC1LQ5JSQ8 128 aa6.99□□□□□ -1.29
CD44-206ENST00000415148 SHISA2Q6UWI4 295 aa6.99□□□□□ -1.29
CD44-206ENST00000415148 MYO9AB2RTY4 2548 aa6.99□□□□□ -1.29
CD44-206ENST00000415148 TEX15Q9BXT5 2789 aa6.99□□□□□ -1.29
CD44-206ENST00000415148 ACYP1P07311 99 aa6.98□□□□□ -1.29
CD44-206ENST00000415148 DEFB113Q30KQ7 82 aa6.98□□□□□ -1.29
CD44-206ENST00000415148 NTM-AS1Q6ZSK4 140 aa6.98□□□□□ -1.29
CD44-206ENST00000415148 SMCR5Q8TEV8 140 aa6.98□□□□□ -1.29
CD44-206ENST00000415148 ZNF462Q96JM2 2506 aa6.98□□□□□ -1.29
CD44-206ENST00000415148 PRB1P04280 392 aa6.98□□□□□ -1.29
CD44-206ENST00000415148 WNK1Q9H4A3 2382 aa6.97□□□□□ -1.29
CD44-206ENST00000415148 F5H768 121 aa6.97□□□□□ -1.29
CD44-206ENST00000415148 C22orf24Q9Y442 160 aa6.97□□□□□ -1.29
CD44-206ENST00000415148 ANKRD17O75179 2603 aaKnown RBP6.97□□□□□ -1.29
CD44-206ENST00000415148 NF1P21359 2839 aa6.97□□□□□ -1.29
CD44-206ENST00000415148 PF4P02776 101 aa6.97□□□□□ -1.29
CD44-206ENST00000415148 PRIMA1Q86XR5 153 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms