RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 LINC00959A0A1B0GUT2 108 aa12.21□□□□□ -0.45
SF3A1-202ENST00000411423 VCYO14598 125 aa12.21□□□□□ -0.45
SF3A1-202ENST00000411423 HIGD2BQ4VC39 106 aa12.21□□□□□ -0.45
SF3A1-202ENST00000411423 CDC42SE2Q9NRR3 84 aa12.21□□□□□ -0.45
SF3A1-202ENST00000411423 C7orf77A4D0Y5 90 aa12.2□□□□□ -0.46
SF3A1-202ENST00000411423 HBBP68871 147 aa12.19□□□□□ -0.46
SF3A1-202ENST00000411423 CLLU1Q5K131 121 aa12.19□□□□□ -0.46
SF3A1-202ENST00000411423 TMEM101Q96IK0 257 aa12.19□□□□□ -0.46
SF3A1-202ENST00000411423 BTF3L4Q96K17 158 aa12.19□□□□□ -0.46
SF3A1-202ENST00000411423 TRBV24-1A0A075B6N3 115 aa12.18□□□□□ -0.46
SF3A1-202ENST00000411423 A0A1B0GW15 77 aa12.18□□□□□ -0.46
SF3A1-202ENST00000411423 CCL25O15444 150 aa12.18□□□□□ -0.46
SF3A1-202ENST00000411423 PLA2G1BP04054 148 aaKnown RBP12.18□□□□□ -0.46
SF3A1-202ENST00000411423 XCL1P47992 114 aa12.18□□□□□ -0.46
SF3A1-202ENST00000411423 IFITM2Q01629 132 aa12.18□□□□□ -0.46
SF3A1-202ENST00000411423 UBE2D4Q9Y2X8 147 aa12.18□□□□□ -0.46
SF3A1-202ENST00000411423 LRP1Q07954 4544 aaKnown RBP12.18□□□□□ -0.46
SF3A1-202ENST00000411423 FAT3Q8TDW7 4589 aa12.18□□□□□ -0.46
SF3A1-202ENST00000411423 LINC00862A6NCI5 91 aa12.17□□□□□ -0.46
SF3A1-202ENST00000411423 D6R8Y8 96 aa12.17□□□□□ -0.46
SF3A1-202ENST00000411423 TNFRSF6BO95407 300 aa12.17□□□□□ -0.46
SF3A1-202ENST00000411423 NPYP01303 97 aa12.17□□□□□ -0.46
SF3A1-202ENST00000411423 CHTF8P0CG12 524 aa12.17□□□□□ -0.46
SF3A1-202ENST00000411423 FCER1GP30273 86 aa12.17□□□□□ -0.46
SF3A1-202ENST00000411423 CKS2P33552 79 aa12.17□□□□□ -0.46
SF3A1-202ENST00000411423 RNASE13Q5GAN3 156 aaKnown RBP12.17□□□□□ -0.46
SF3A1-202ENST00000411423 ZNF664Q8N3J9 261 aa12.17□□□□□ -0.46
SF3A1-202ENST00000411423 PPP1R17O96001 155 aa12.16□□□□□ -0.46
SF3A1-202ENST00000411423 RAB14P61106 215 aa12.16□□□□□ -0.46
SF3A1-202ENST00000411423 CIRBPQ14011 172 aaKnown RBP12.16□□□□□ -0.46
SF3A1-202ENST00000411423 FAM104AQ969W3 186 aa12.16□□□□□ -0.46
SF3A1-202ENST00000411423 AP5S1Q9NUS5 200 aa12.16□□□□□ -0.46
SF3A1-202ENST00000411423 GVQW2A0A096LPI5 108 aaPredicted RBP12.15□□□□□ -0.46
SF3A1-202ENST00000411423 PPP1R2P9O14990 202 aa12.15□□□□□ -0.46
SF3A1-202ENST00000411423 KIR2DL4Q99706 377 aa12.15□□□□□ -0.46
SF3A1-202ENST00000411423 C20orf78Q9BR46 151 aa12.15□□□□□ -0.46
SF3A1-202ENST00000411423 IGHV3-64A0A075B6Q5 118 aa12.14□□□□□ -0.47
SF3A1-202ENST00000411423 RPL32P62910 135 aaKnown RBP12.14□□□□□ -0.47
SF3A1-202ENST00000411423 CFAP161Q6P656 301 aa12.14□□□□□ -0.47
SF3A1-202ENST00000411423 Q6ZUT4 128 aa12.14□□□□□ -0.47
SF3A1-202ENST00000411423 LINC00526Q96FQ7 95 aa12.14□□□□□ -0.47
SF3A1-202ENST00000411423 RPL39P62891 51 aaKnown RBP12.13□□□□□ -0.47
SF3A1-202ENST00000411423 SMIM2Q9BVW6 85 aa12.13□□□□□ -0.47
SF3A1-202ENST00000411423 CSDC2Q9Y534 153 aaKnown RBP12.13□□□□□ -0.47
SF3A1-202ENST00000411423 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.12□□□□□ -0.47
SF3A1-202ENST00000411423 F8W036 122 aa12.12□□□□□ -0.47
SF3A1-202ENST00000411423 ADCYAP1P18509 176 aa12.12□□□□□ -0.47
SF3A1-202ENST00000411423 PNRC1Q12796 327 aaPredicted RBP12.12□□□□□ -0.47
SF3A1-202ENST00000411423 ATP5L2Q7Z4Y8 100 aa12.12□□□□□ -0.47
SF3A1-202ENST00000411423 TCAPO15273 167 aa12.11□□□□□ -0.47
SF3A1-202ENST00000411423 S100A8P05109 93 aa12.11□□□□□ -0.47
SF3A1-202ENST00000411423 HNRNPA3P51991 378 aaKnown RBP12.11□□□□□ -0.47
SF3A1-202ENST00000411423 SS18Q15532 418 aa12.11□□□□□ -0.47
SF3A1-202ENST00000411423 CD164L2Q6UWJ8 174 aa12.11□□□□□ -0.47
SF3A1-202ENST00000411423 PRSS3P2Q8NHM4 247 aa12.11□□□□□ -0.47
SF3A1-202ENST00000411423 SPACA4Q8TDM5 124 aa12.11□□□□□ -0.47
SF3A1-202ENST00000411423 COX6A2Q02221 97 aa12.1□□□□□ -0.47
SF3A1-202ENST00000411423 OPRPNQ99935 248 aaPredicted RBP12.1□□□□□ -0.47
SF3A1-202ENST00000411423 A0A087WYN8 130 aa12.09□□□□□ -0.47
SF3A1-202ENST00000411423 TIMM21Q9BVV7 248 aa12.09□□□□□ -0.47
SF3A1-202ENST00000411423 TRAV13-1A0A0B4J241 112 aa12.08□□□□□ -0.48
SF3A1-202ENST00000411423 IGHV1-58A0A0C4DH39 117 aa12.08□□□□□ -0.48
SF3A1-202ENST00000411423 PHOX2AO14813 284 aa12.08□□□□□ -0.48
SF3A1-202ENST00000411423 RPL37AP61513 92 aaKnown RBP12.08□□□□□ -0.48
SF3A1-202ENST00000411423 TMEM136Q6ZRR5 245 aa12.08□□□□□ -0.48
SF3A1-202ENST00000411423 ORMDL3Q8N138 153 aa12.08□□□□□ -0.48
SF3A1-202ENST00000411423 ANAPC16Q96DE5 110 aa12.08□□□□□ -0.48
SF3A1-202ENST00000411423 DMBT1Q9UGM3 2413 aaPredicted RBP12.07□□□□□ -0.48
SF3A1-202ENST00000411423 PPBPP02775 128 aa12.07□□□□□ -0.48
SF3A1-202ENST00000411423 MT-ND4LP03901 98 aa12.07□□□□□ -0.48
SF3A1-202ENST00000411423 PRELID3AQ96N28 172 aa12.07□□□□□ -0.48
SF3A1-202ENST00000411423 UQCC3Q6UW78 93 aa12.06□□□□□ -0.48
SF3A1-202ENST00000411423 C1orf196B1AJZ1 125 aa12.05□□□□□ -0.48
SF3A1-202ENST00000411423 TMEM18Q96B42 140 aa12.05□□□□□ -0.48
SF3A1-202ENST00000411423 A0A096LNI7 61 aa12.04□□□□□ -0.48
SF3A1-202ENST00000411423 IGKV2-24A0A0C4DH68 120 aa12.04□□□□□ -0.48
SF3A1-202ENST00000411423 PRSS47A8MTI9 375 aa12.04□□□□□ -0.48
SF3A1-202ENST00000411423 KRTAP29-1A8MX34 341 aaPredicted RBP12.04□□□□□ -0.48
SF3A1-202ENST00000411423 PLAC8Q9NZF1 115 aa12.04□□□□□ -0.48
SF3A1-202ENST00000411423 TMEM218A2RU14 115 aa12.03□□□□□ -0.48
SF3A1-202ENST00000411423 SMAGPQ0VAQ4 97 aa12.03□□□□□ -0.48
SF3A1-202ENST00000411423 C5orf38Q86SI9 138 aa12.03□□□□□ -0.48
SF3A1-202ENST00000411423 IGLV4-69A0A075B6H9 119 aa12.02□□□□□ -0.49
SF3A1-202ENST00000411423 LOC389332A0A1B0GUA5 103 aa12.02□□□□□ -0.49
SF3A1-202ENST00000411423 COX7A2LO14548 114 aa12.02□□□□□ -0.49
SF3A1-202ENST00000411423 MAJINQ3KP22 176 aa12.02□□□□□ -0.49
SF3A1-202ENST00000411423 DPH3Q96FX2 82 aa12.02□□□□□ -0.49
SF3A1-202ENST00000411423 CARD19Q96LW7 228 aa12.02□□□□□ -0.49
SF3A1-202ENST00000411423 SPANXA1Q9NS26 97 aa12.02□□□□□ -0.49
SF3A1-202ENST00000411423 MRPS36P82909 103 aaKnown RBP12.01□□□□□ -0.49
SF3A1-202ENST00000411423 Q6ZRU5 148 aa12.01□□□□□ -0.49
SF3A1-202ENST00000411423 J3QL48 77 aa12□□□□□ -0.49
SF3A1-202ENST00000411423 SYCNQ0VAF6 134 aa12□□□□□ -0.49
SF3A1-202ENST00000411423 ZNF561-AS1K7EIQ3 104 aa11.99□□□□□ -0.49
SF3A1-202ENST00000411423 MALP21145 153 aa11.99□□□□□ -0.49
SF3A1-202ENST00000411423 IGLV4-3A0A075B6K6 122 aa11.98□□□□□ -0.49
SF3A1-202ENST00000411423 IGHV3OR16-9A0A0B4J2B5 98 aa11.98□□□□□ -0.49
SF3A1-202ENST00000411423 STPG4Q8N801 248 aa11.98□□□□□ -0.49
SF3A1-202ENST00000411423 MAP1LC3AQ9H492 121 aa11.98□□□□□ -0.49
SF3A1-202ENST00000411423 LAMTOR2Q9Y2Q5 125 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms