RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 TMEM97Q5BJF2 176 aa9.77□□□□□ -0.84
GPNMB-203ENST00000409458 MRPL52Q86TS9 123 aaKnown RBP9.77□□□□□ -0.84
GPNMB-203ENST00000409458 C11orf45Q8TAV5 145 aa9.77□□□□□ -0.84
GPNMB-203ENST00000409458 VCX2Q9H322 139 aa9.77□□□□□ -0.84
GPNMB-203ENST00000409458 UBE2L6O14933 153 aa9.77□□□□□ -0.85
GPNMB-203ENST00000409458 IGLC3P0DOY3 106 aa9.77□□□□□ -0.85
GPNMB-203ENST00000409458 DDTP30046 118 aa9.77□□□□□ -0.85
GPNMB-203ENST00000409458 PAPPA-AS1Q5QFB9 102 aa9.77□□□□□ -0.85
GPNMB-203ENST00000409458 C14orf144Q96I85 54 aa9.77□□□□□ -0.85
GPNMB-203ENST00000409458 C11orf86A6NJI1 115 aa9.76□□□□□ -0.85
GPNMB-203ENST00000409458 MRPS36P82909 103 aaKnown RBP9.76□□□□□ -0.85
GPNMB-203ENST00000409458 GAGE6Q13070 117 aa9.76□□□□□ -0.85
GPNMB-203ENST00000409458 TP73-AS1Q9UF72 201 aa9.76□□□□□ -0.85
GPNMB-203ENST00000409458 LINC00587B1AMM8 73 aa9.75□□□□□ -0.85
GPNMB-203ENST00000409458 H7C423 109 aa9.75□□□□□ -0.85
GPNMB-203ENST00000409458 DGAT2L7PQ6IED9 249 aa9.75□□□□□ -0.85
GPNMB-203ENST00000409458 CSDC2Q9Y534 153 aaKnown RBP9.75□□□□□ -0.85
GPNMB-203ENST00000409458 ICOSQ9Y6W8 199 aa9.75□□□□□ -0.85
GPNMB-203ENST00000409458 MRPL23Q16540 153 aaKnown RBP9.74□□□□□ -0.85
GPNMB-203ENST00000409458 MIEN1Q9BRT3 115 aa9.74□□□□□ -0.85
GPNMB-203ENST00000409458 CHCHD5Q9BSY4 110 aa9.74□□□□□ -0.85
GPNMB-203ENST00000409458 AMMECR1LQ6DCA0 310 aa9.74□□□□□ -0.85
GPNMB-203ENST00000409458 OR5A1Q8NGJ0 315 aa9.74□□□□□ -0.85
GPNMB-203ENST00000409458 B9D2Q9BPU9 175 aa9.74□□□□□ -0.85
GPNMB-203ENST00000409458 CHAC1Q9BUX1 264 aa9.74□□□□□ -0.85
GPNMB-203ENST00000409458 UQCR10Q9UDW1 63 aa9.74□□□□□ -0.85
GPNMB-203ENST00000409458 IGKV2D-26A0A0A0MRZ7 120 aa9.73□□□□□ -0.85
GPNMB-203ENST00000409458 A0A0J9YXV3 536 aa9.73□□□□□ -0.85
GPNMB-203ENST00000409458 SMAGPQ0VAQ4 97 aa9.73□□□□□ -0.85
GPNMB-203ENST00000409458 NFE4Q86UQ8 179 aa9.73□□□□□ -0.85
GPNMB-203ENST00000409458 C2orf88Q9BSF0 95 aa9.73□□□□□ -0.85
GPNMB-203ENST00000409458 DEFB131BA0A096LNP1 70 aa9.72□□□□□ -0.85
GPNMB-203ENST00000409458 H3BNG1 76 aa9.72□□□□□ -0.85
GPNMB-203ENST00000409458 NMUP48645 174 aa9.72□□□□□ -0.85
GPNMB-203ENST00000409458 CDC42SE2Q9NRR3 84 aa9.72□□□□□ -0.85
GPNMB-203ENST00000409458 COX8AP10176 69 aa9.71□□□□□ -0.85
GPNMB-203ENST00000409458 ZNF25P17030 456 aaPredicted RBP9.71□□□□□ -0.85
GPNMB-203ENST00000409458 UBE2D1P51668 147 aa9.71□□□□□ -0.85
GPNMB-203ENST00000409458 SH2D6Q7Z4S9 175 aa9.71□□□□□ -0.85
GPNMB-203ENST00000409458 TMEM101Q96IK0 257 aa9.71□□□□□ -0.85
GPNMB-203ENST00000409458 IGLV4-60A0A075B6I1 120 aa9.71□□□□□ -0.86
GPNMB-203ENST00000409458 ZNF22P17026 224 aaPredicted RBP9.7□□□□□ -0.86
GPNMB-203ENST00000409458 TMEM170BQ5T4T1 132 aa9.7□□□□□ -0.86
GPNMB-203ENST00000409458 PCP2Q8IVA1 136 aa9.7□□□□□ -0.86
GPNMB-203ENST00000409458 MPV17L2Q567V2 206 aa9.69□□□□□ -0.86
GPNMB-203ENST00000409458 SLC25A34Q6PIV7 304 aa9.69□□□□□ -0.86
GPNMB-203ENST00000409458 TTTY13Q9BZ97 58 aa9.69□□□□□ -0.86
GPNMB-203ENST00000409458 PRKDCP78527 4128 aaKnown RBP9.69□□□□□ -0.86
GPNMB-203ENST00000409458 TRAV10A0A0B4J240 114 aa9.68□□□□□ -0.86
GPNMB-203ENST00000409458 TINCRA0A1B0GVN0 87 aa9.68□□□□□ -0.86
GPNMB-203ENST00000409458 HNRNPA3P51991 378 aaKnown RBP9.68□□□□□ -0.86
GPNMB-203ENST00000409458 LELP1Q5T871 98 aa9.68□□□□□ -0.86
GPNMB-203ENST00000409458 E9PLD3 99 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 TMEM262E9PQX1 116 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 RBX1P62877 108 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 LYPD5Q6UWN5 251 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 BOD1L2Q8IYS8 172 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 TRAV13-1A0A0B4J241 112 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 TMEM223A0PJW6 202 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 HERVK_113P61574 105 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 Q8N3U1 123 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 COL7A1Q02388 2944 aa9.67□□□□□ -0.86
GPNMB-203ENST00000409458 A0A1B0GUV1 79 aa9.66□□□□□ -0.86
GPNMB-203ENST00000409458 LINC00242Q5T6M2 205 aa9.66□□□□□ -0.86
GPNMB-203ENST00000409458 FAM19A3Q7Z5A8 133 aa9.66□□□□□ -0.86
GPNMB-203ENST00000409458 TRAV8-6A0A0B4J262 113 aa9.65□□□□□ -0.86
GPNMB-203ENST00000409458 TIRAPP58753 221 aa9.65□□□□□ -0.86
GPNMB-203ENST00000409458 DEFA6Q01524 100 aa9.65□□□□□ -0.86
GPNMB-203ENST00000409458 COX6A2Q02221 97 aa9.65□□□□□ -0.86
GPNMB-203ENST00000409458 C2orf91Q6ZV80 131 aa9.65□□□□□ -0.86
GPNMB-203ENST00000409458 IGLV5-45A0A087WSX0 123 aa9.64□□□□□ -0.87
GPNMB-203ENST00000409458 IGKV3OR2-268A0A0C4DH90 116 aa9.64□□□□□ -0.87
GPNMB-203ENST00000409458 DLEU1O43261 78 aa9.64□□□□□ -0.87
GPNMB-203ENST00000409458 TSPEAR-AS2P59090 65 aa9.64□□□□□ -0.87
GPNMB-203ENST00000409458 CTAG1AP78358 180 aa9.64□□□□□ -0.87
GPNMB-203ENST00000409458 LINC00469Q8N7U9 141 aa9.64□□□□□ -0.87
GPNMB-203ENST00000409458 MAPKAPK5-AS1Q8N8E1 139 aa9.64□□□□□ -0.87
GPNMB-203ENST00000409458 GEMIN7Q9H840 131 aaKnown RBP9.64□□□□□ -0.87
GPNMB-203ENST00000409458 IGHV3-64A0A075B6Q5 118 aa9.64□□□□□ -0.87
GPNMB-203ENST00000409458 HERVK_113P63121 156 aa9.63□□□□□ -0.87
GPNMB-203ENST00000409458 CDKN2A-AS1Q9UH64 79 aa9.63□□□□□ -0.87
GPNMB-203ENST00000409458 DYNC2H1Q8NCM8 4307 aaKnown RBP9.63□□□□□ -0.87
GPNMB-203ENST00000409458 SEC11AP67812 179 aa9.62□□□□□ -0.87
GPNMB-203ENST00000409458 CLPSL2Q6UWE3 100 aa9.62□□□□□ -0.87
GPNMB-203ENST00000409458 MRPS16Q9Y3D3 137 aaKnown RBP9.62□□□□□ -0.87
GPNMB-203ENST00000409458 TRAV8-3A0A0A6YYJ7 113 aa9.61□□□□□ -0.87
GPNMB-203ENST00000409458 SPINK8P0C7L1 97 aa9.61□□□□□ -0.87
GPNMB-203ENST00000409458 NHLRC4P0CG21 123 aaPredicted RBP9.61□□□□□ -0.87
GPNMB-203ENST00000409458 ESRGQ1W209 222 aa9.61□□□□□ -0.87
GPNMB-203ENST00000409458 MYMXA0A1B0GTQ4 84 aa9.61□□□□□ -0.87
GPNMB-203ENST00000409458 LEPROTO15243 131 aa9.61□□□□□ -0.87
GPNMB-203ENST00000409458 WFDC10BQ8IUB3 73 aa9.61□□□□□ -0.87
GPNMB-203ENST00000409458 C15orf53Q8NAA6 179 aa9.61□□□□□ -0.87
GPNMB-203ENST00000409458 MEGF8Q7Z7M0 2845 aa9.6□□□□□ -0.87
GPNMB-203ENST00000409458 LINC00959A0A1B0GUT2 108 aa9.6□□□□□ -0.87
GPNMB-203ENST00000409458 J3QQQ9 107 aa9.6□□□□□ -0.87
GPNMB-203ENST00000409458 EREGO14944 169 aa9.6□□□□□ -0.87
GPNMB-203ENST00000409458 ANGP03950 147 aaKnown RBP9.6□□□□□ -0.87
GPNMB-203ENST00000409458 LINC00269Q8N2A0 174 aa9.6□□□□□ -0.87
GPNMB-203ENST00000409458 IGHV1-58A0A0C4DH39 117 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms