RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PSMB8P28062 276 aa8.96□□□□□ -0.98
HMGB1-206ENST00000405805 CFHR3Q02985 330 aa8.96□□□□□ -0.98
HMGB1-206ENST00000405805 KIR2DL5BQ8NHK3 375 aa8.96□□□□□ -0.98
HMGB1-206ENST00000405805 TRBV7-3A0A075B6L6 115 aa8.95□□□□□ -0.98
HMGB1-206ENST00000405805 A8MZ25 164 aa8.95□□□□□ -0.98
HMGB1-206ENST00000405805 IGHV3-33P01772 117 aa8.95□□□□□ -0.98
HMGB1-206ENST00000405805 NEXN-AS1Q8NBZ9 246 aa8.95□□□□□ -0.98
HMGB1-206ENST00000405805 TRGV1A0A0A0MS02 117 aa8.94□□□□□ -0.98
HMGB1-206ENST00000405805 MSMBP08118 114 aa8.94□□□□□ -0.98
HMGB1-206ENST00000405805 DAZ2Q13117 558 aaKnown RBP8.94□□□□□ -0.98
HMGB1-206ENST00000405805 DAZ4Q86SG3 579 aaKnown RBP8.94□□□□□ -0.98
HMGB1-206ENST00000405805 DAZ3Q9NR90 486 aaKnown RBP8.94□□□□□ -0.98
HMGB1-206ENST00000405805 ANKRD17O75179 2603 aaKnown RBP8.94□□□□□ -0.98
HMGB1-206ENST00000405805 A0A0J9YY99 117 aa8.94□□□□□ -0.98
HMGB1-206ENST00000405805 C11orf71Q6IPW1 123 aa8.94□□□□□ -0.98
HMGB1-206ENST00000405805 A0A087WVE0 104 aa8.94□□□□□ -0.98
HMGB1-206ENST00000405805 PROK1P58294 105 aa8.94□□□□□ -0.98
HMGB1-206ENST00000405805 SNURFQ9Y675 71 aa8.94□□□□□ -0.98
HMGB1-206ENST00000405805 NXPH4O95158 308 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 DEFB112Q30KQ8 113 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 Q6Q795 121 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 SOSTDC1Q6X4U4 206 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 APRG1Q8IVJ8 170 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 Q8N6K4 173 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 LINC00526Q96FQ7 95 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 FLNCQ14315 2725 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 I3L3M4 83 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 ATP5G1P05496 136 aa8.93□□□□□ -0.98
HMGB1-206ENST00000405805 RNASE3P12724 160 aaKnown RBP8.93□□□□□ -0.98
HMGB1-206ENST00000405805 USP17L23D6RBM5 183 aa8.92□□□□□ -0.98
HMGB1-206ENST00000405805 TIMM17BO60830 172 aa8.92□□□□□ -0.98
HMGB1-206ENST00000405805 BRI3O95415 125 aa8.92□□□□□ -0.98
HMGB1-206ENST00000405805 PIFOQ8TCI5 191 aa8.92□□□□□ -0.98
HMGB1-206ENST00000405805 TRGV2A0A075B6R0 118 aa8.92□□□□□ -0.98
HMGB1-206ENST00000405805 SERP2Q8N6R1 65 aa8.92□□□□□ -0.98
HMGB1-206ENST00000405805 MRPL53Q96EL3 112 aaKnown RBP8.92□□□□□ -0.98
HMGB1-206ENST00000405805 TMEM141Q96I45 108 aa8.92□□□□□ -0.98
HMGB1-206ENST00000405805 RNF223E7ERA6 249 aa8.91□□□□□ -0.98
HMGB1-206ENST00000405805 B4DSR2 109 aa8.91□□□□□ -0.98
HMGB1-206ENST00000405805 NHLRC4P0CG21 123 aaPredicted RBP8.91□□□□□ -0.98
HMGB1-206ENST00000405805 RPL36AP83881 106 aaKnown RBP8.91□□□□□ -0.98
HMGB1-206ENST00000405805 RPL36ALQ969Q0 106 aaKnown RBP8.91□□□□□ -0.98
HMGB1-206ENST00000405805 LENEPQ9Y5L5 61 aa8.91□□□□□ -0.98
HMGB1-206ENST00000405805 FASNP49327 2511 aaKnown RBP8.91□□□□□ -0.98
HMGB1-206ENST00000405805 ZNF580Q9UK33 172 aa8.91□□□□□ -0.98
HMGB1-206ENST00000405805 ZNRF2Q8NHG8 242 aa8.91□□□□□ -0.98
HMGB1-206ENST00000405805 CNFNQ9BYD5 112 aa8.91□□□□□ -0.98
HMGB1-206ENST00000405805 EBI3Q14213 229 aa8.9□□□□□ -0.98
HMGB1-206ENST00000405805 PRO0461Q9UI25 63 aa8.9□□□□□ -0.98
HMGB1-206ENST00000405805 IGLV2-18A0A075B6J9 118 aa8.9□□□□□ -0.98
HMGB1-206ENST00000405805 SLURP1P55000 103 aa8.9□□□□□ -0.98
HMGB1-206ENST00000405805 WFDC9Q8NEX5 89 aa8.9□□□□□ -0.98
HMGB1-206ENST00000405805 FHL3Q13643 280 aa8.9□□□□□ -0.99
HMGB1-206ENST00000405805 Q9H8V8 135 aa8.9□□□□□ -0.99
HMGB1-206ENST00000405805 RPL18AQ02543 176 aaKnown RBP8.89□□□□□ -0.99
HMGB1-206ENST00000405805 STHQ8IWL8 128 aa8.88□□□□□ -0.99
HMGB1-206ENST00000405805 LRCOL1A6NCL2 159 aa8.88□□□□□ -0.99
HMGB1-206ENST00000405805 ZMAT4Q9H898 229 aa8.88□□□□□ -0.99
HMGB1-206ENST00000405805 SVEP1Q4LDE5 3571 aa8.88□□□□□ -0.99
HMGB1-206ENST00000405805 H7C423 109 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 TSPEAR-AS2P59090 65 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 PRO0628Q9UI54 55 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 FAM240AA0A1B0GVK7 77 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 IGHV4OR15-8A0A075B7B6 117 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 A0A087WW49 117 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 Q6ZSV7 163 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 ODF3Q96PU9 254 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 LECT2O14960 151 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 TMEM86BQ8N661 226 aa8.87□□□□□ -0.99
HMGB1-206ENST00000405805 NDUFC2-KCTD14E9PQ53 114 aa8.86□□□□□ -0.99
HMGB1-206ENST00000405805 MALP21145 153 aa8.86□□□□□ -0.99
HMGB1-206ENST00000405805 ENHOQ6UWT2 76 aa8.86□□□□□ -0.99
HMGB1-206ENST00000405805 IGHV3-30-3P0DP02 117 aa8.86□□□□□ -0.99
HMGB1-206ENST00000405805 IGHV3-30P01768 117 aa8.85□□□□□ -0.99
HMGB1-206ENST00000405805 IGHV3-30-5P0DP03 117 aa8.85□□□□□ -0.99
HMGB1-206ENST00000405805 IMUPQ9GZP8 106 aa8.85□□□□□ -0.99
HMGB1-206ENST00000405805 PRORYQ9H606 182 aa8.85□□□□□ -0.99
HMGB1-206ENST00000405805 UBE2D3P61077 147 aa8.85□□□□□ -0.99
HMGB1-206ENST00000405805 UBE2D2P62837 147 aa8.85□□□□□ -0.99
HMGB1-206ENST00000405805 C20orf203Q8NBC4 194 aa8.85□□□□□ -0.99
HMGB1-206ENST00000405805 PYGO1Q9Y3Y4 419 aa8.85□□□□□ -0.99
HMGB1-206ENST00000405805 UBE2D1P51668 147 aa8.84□□□□□ -0.99
HMGB1-206ENST00000405805 OVOL2Q9BRP0 275 aa8.84□□□□□ -0.99
HMGB1-206ENST00000405805 A0A0J9YX75 114 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 AVPP01185 164 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 GPHB5Q86YW7 130 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 TIMM17AQ99595 171 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 A0A0J9YXY3 114 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 TMEM61Q8N0U2 210 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 TRGV4A0A0C4DH28 118 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 C6orf226Q5I0X4 101 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 SLPIP03973 132 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 TIRAPP58753 221 aa8.83□□□□□ -1
HMGB1-206ENST00000405805 M0QY20 66 aa8.82□□□□□ -1
HMGB1-206ENST00000405805 DEFB130BP0DP73 79 aa8.82□□□□□ -1
HMGB1-206ENST00000405805 DEFB130AP0DP74 79 aa8.82□□□□□ -1
HMGB1-206ENST00000405805 POLR2KP53803 58 aaKnown RBP8.82□□□□□ -1
HMGB1-206ENST00000405805 SCXQ7RTU7 201 aa8.82□□□□□ -1
HMGB1-206ENST00000405805 CUBNO60494 3623 aa8.82□□□□□ -1
HMGB1-206ENST00000405805 A0A096LPF7 62 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms