RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PMCHP20382 165 aa6.21□□□□□ -1.42
VPS53-203ENST00000401468 Q8N8P6 123 aa6.21□□□□□ -1.42
VPS53-203ENST00000401468 C18orf32Q8TCD1 76 aa6.21□□□□□ -1.42
VPS53-203ENST00000401468 KIR2DL4Q99706 377 aa6.21□□□□□ -1.42
VPS53-203ENST00000401468 Q9H8V8 135 aa6.21□□□□□ -1.42
VPS53-203ENST00000401468 NXT2Q9NPJ8 142 aaKnown RBP6.21□□□□□ -1.42
VPS53-203ENST00000401468 DNAH11Q96DT5 4516 aa6.21□□□□□ -1.42
VPS53-203ENST00000401468 A0A1B0GUV1 79 aa6.2□□□□□ -1.42
VPS53-203ENST00000401468 C16orf90A8MZG2 172 aa6.2□□□□□ -1.42
VPS53-203ENST00000401468 TRGC2P03986 189 aa6.2□□□□□ -1.42
VPS53-203ENST00000401468 BTF3P20290 206 aaKnown RBP6.2□□□□□ -1.42
VPS53-203ENST00000401468 AMTP48728 403 aa6.2□□□□□ -1.42
VPS53-203ENST00000401468 PKIAP61925 76 aa6.2□□□□□ -1.42
VPS53-203ENST00000401468 MRPL52Q86TS9 123 aaKnown RBP6.2□□□□□ -1.42
VPS53-203ENST00000401468 C6orf223Q8N319 242 aa6.2□□□□□ -1.42
VPS53-203ENST00000401468 TMEM243Q9BU79 118 aa6.2□□□□□ -1.42
VPS53-203ENST00000401468 IFI27P40305 119 aaPredicted RBP6.19□□□□□ -1.42
VPS53-203ENST00000401468 C20orf203Q8NBC4 194 aa6.19□□□□□ -1.42
VPS53-203ENST00000401468 URB1-AS1Q96HZ7 61 aa6.19□□□□□ -1.42
VPS53-203ENST00000401468 CSDC2Q9Y534 153 aaKnown RBP6.19□□□□□ -1.42
VPS53-203ENST00000401468 ZNF25P17030 456 aaPredicted RBP6.18□□□□□ -1.42
VPS53-203ENST00000401468 Q0VG73 95 aa6.18□□□□□ -1.42
VPS53-203ENST00000401468 LAGE3Q14657 143 aa6.18□□□□□ -1.42
VPS53-203ENST00000401468 MPV17L2Q567V2 206 aa6.18□□□□□ -1.42
VPS53-203ENST00000401468 SPATA12Q7Z6I5 190 aa6.18□□□□□ -1.42
VPS53-203ENST00000401468 TIMM21Q9BVV7 248 aa6.18□□□□□ -1.42
VPS53-203ENST00000401468 LOC389332A0A1B0GUA5 103 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 IBA57-AS1B1ANH7 110 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 FCER1GP30273 86 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 ORMDL2Q53FV1 153 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 TTC32Q5I0X7 151 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 C10orf126Q8N4M7 172 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 FAM104AQ969W3 186 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 CHCHD5Q9BSY4 110 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 CDIP1Q9H305 208 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 PRR34Q9NV39 138 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 HSPG2P98160 4391 aa6.17□□□□□ -1.42
VPS53-203ENST00000401468 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.16□□□□□ -1.42
VPS53-203ENST00000401468 IGKV2-29A2NJV5 120 aaPredicted RBP6.16□□□□□ -1.42
VPS53-203ENST00000401468 NPSP0C0P6 89 aa6.16□□□□□ -1.42
VPS53-203ENST00000401468 RBX1P62877 108 aa6.16□□□□□ -1.42
VPS53-203ENST00000401468 Q8N1X5 172 aa6.16□□□□□ -1.42
VPS53-203ENST00000401468 DEFB104AQ8WTQ1 72 aa6.16□□□□□ -1.42
VPS53-203ENST00000401468 UBE2D4Q9Y2X8 147 aa6.16□□□□□ -1.42
VPS53-203ENST00000401468 PYGO1Q9Y3Y4 419 aa6.16□□□□□ -1.42
VPS53-203ENST00000401468 DMBT1Q9UGM3 2413 aaPredicted RBP6.16□□□□□ -1.42
VPS53-203ENST00000401468 IGLV4-60A0A075B6I1 120 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 TRAV9-2A0A087WT02 112 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 A0A087WX48 190 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 A0A096LNJ9 63 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 LINC01549A6NIU2 74 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 UBE2L6O14933 153 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 LINC00614P0C842 121 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 FGF6P10767 208 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 G0S2P27469 103 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 RAB5BP61020 215 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 MRPS36P82909 103 aaKnown RBP6.15□□□□□ -1.42
VPS53-203ENST00000401468 GAGE6Q13070 117 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 PRSS3P2Q8NHM4 247 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 TMEM18Q96B42 140 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 TOMM6Q96B49 74 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 CHCHD1Q96BP2 118 aaKnown RBP6.15□□□□□ -1.42
VPS53-203ENST00000401468 SPANXA1Q9NS26 97 aa6.15□□□□□ -1.42
VPS53-203ENST00000401468 IGIPA6NJ69 53 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST1H2BKO60814 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 IGHV3-30P01768 117 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 IGHV3-33P01772 117 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 SLPIP03973 132 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST1H2BJP06899 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 IGHV3-30-3P0DP02 117 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 IGHV3-30-5P0DP03 117 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST1H2BOP23527 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST1H2BBP33778 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST1H2BDP58876 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST1H2BCP62807 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 RPL39P62891 51 aaKnown RBP6.14□□□□□ -1.43
VPS53-203ENST00000401468 HAMPP81172 84 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 SMAGPQ0VAQ4 97 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST2H2BEQ16778 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 COA6Q5JTJ3 125 aaKnown RBP6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.14□□□□□ -1.43
VPS53-203ENST00000401468 FA2HQ7L5A8 372 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 MAPKAPK5-AS1Q8N8E1 139 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 Q8N976 141 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST1H2BHQ93079 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST1H2BNQ99877 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 HIST1H2BMQ99879 126 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 CDC42SE2Q9NRR3 84 aa6.14□□□□□ -1.43
VPS53-203ENST00000401468 TMEM262E9PQX1 116 aa6.13□□□□□ -1.43
VPS53-203ENST00000401468 ENHOQ6UWT2 76 aa6.13□□□□□ -1.43
VPS53-203ENST00000401468 C2orf66Q6UXQ4 117 aa6.13□□□□□ -1.43
VPS53-203ENST00000401468 Q6ZRN7 208 aaPredicted RBP6.13□□□□□ -1.43
VPS53-203ENST00000401468 TIMM17AQ99595 171 aa6.13□□□□□ -1.43
VPS53-203ENST00000401468 CYSLTR1Q9Y271 337 aa6.13□□□□□ -1.43
VPS53-203ENST00000401468 PDZD11Q5EBL8 140 aa6.12□□□□□ -1.43
VPS53-203ENST00000401468 KRTAP26-1Q6PEX3 210 aa6.12□□□□□ -1.43
VPS53-203ENST00000401468 ZNF664Q8N3J9 261 aa6.12□□□□□ -1.43
VPS53-203ENST00000401468 KLK12Q9UKR0 248 aa6.12□□□□□ -1.43
VPS53-203ENST00000401468 IGLV4-3A0A075B6K6 122 aa6.11□□□□□ -1.43
VPS53-203ENST00000401468 TRAV8-3A0A0A6YYJ7 113 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms